Works matching IS 1471-2164 AND VI 16 AND DT 2015

Results: 1481

Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals nichespecific evolution of Fructobacillus spp.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2339-x

By:

Akihito Endo;
Yasuhiro Tanizawa;
Naoto Tanaka;
Shintaro Maeno;
Kumar, Himanshu;
Yuh Shiwa;
Sanae Okada;
Hirofumi Yoshikawa;
Dicks, Leon;
Junichi Nakagawa;
Masanori Arita

Publication type:

Article

Transcriptomes of newly-isolated Trypanosoma brucei rhodesiense reveal hundreds of mRNAs that are co-regulated with stumpy-form markers.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2338-y

By:

Mulindwa, Julius;
Mercé, Clémentine;
Matovu, Enock;
Enyaru, John;
Clayton, Christine

Publication type:

Article

Whole mitochondrial genomes unveil the impact of domestication on goat matrilineal variability.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2342-2

By:

Colli, Licia;
Lancioni, Hovirag;
Cardinali, Irene;
Olivieri, Anna;
Capodiferro, Marco Rosario;
Pellecchia, Marco;
Rzepus, Marcin;
Zamani, Wahid;
Naderi, Saeid;
Gandini, Francesca;
Seyed Mohammad Farhad Vahidi;
Agha, Saif;
Randi, Ettore;
Battaglia, Vincenza;
Sardina, Maria Teresa;
Portolano, Baldassare;
Rezaei, Hamid Reza;
Lymberakis, Petros;
Boyer, Frédéric;
Coissac, Eric

Publication type:

Article

Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis).

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2340-4

By:

Nathani, Neelam M.;
Patel, Amrutlal K.;
Mootapally, Chandra Shekar;
Reddy, Bhaskar;
Shah, Shailesh V.;
Lunagaria, Pravin M.;
Kothari, Ramesh K.;
Joshi, Chaitanya G.

Publication type:

Article

Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2351-1

By:

Wallqvist, Anders;
Memišević, Vesna;
Zavaljevski, Nela;
Pieper, Rembert;
Rajagopala, Seesandra V.;
Keehwan Kwon;
Chenggang Yu;
Hoover, Timothy A.;
Reifman, Jaques

Publication type:

Article

Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2335-1

By:

Moumeni, Ali;
Kouji Satoh;
Venuprasad, Ramiah;
Serraj, Rachid;
Kumar, Arvind;
Hei Leung;
Shoshi Kikuchi

Publication type:

Article

Transcriptome profiling of a Rhizobium leguminosarum bv. trifolii rosR mutant reveals the role of the transcriptional regulator RosR in motility, synthesis of cell-surface components, and other cellular processes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2332-4

By:

Rachwał, Kamila;
Matczyńska, Ewa;
Janczarek, Monika

Publication type:

Article

Structure, evolution and functional inference on the Mildew Locus O (MLO) gene family in three cultivated Cucurbitaceae spp.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2325-3

By:

Iovieno, Paolo;
Andolfo, Giuseppe;
Schiavulli, Adalgisa;
Catalano, Domenico;
Ricciardi, Luigi;
Frusciante, Luigi;
Ercolano, Maria Raffaella;
Pavan, Stefano

Publication type:

Article

A high-density genetic map for anchoring genome sequences and identifying QTLs associated with dwarf vine in pumpkin (Cucurbita maxima Duch.).

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2312-8

By:

Guoyu Zhang;
Yi Ren;
Honghe Sun;
Shaogui Guo;
Fan Zhang;
Jie Zhang;
Haiying Zhang;
Zhangcai Jia;
Zhangjun Fei;
Yong Xu;
Haizhen Li

Publication type:

Article

MycoBASE: expanding the functional annotation coverage of mycobacterial genomes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2311-9

By:

Garcia, Benjamin J.;
Datta, Gargi;
Davidson, Rebecca M.;
Strong, Michael

Publication type:

Article

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2289-3

By:

Chunxu Song;
Schmidt, Ruth;
de Jager, Victor;
Krzyzanowska, Dorota;
Jongedijk, Esmer;
Cankar, Katarina;
Beekwilder, Jules;
van Veen, Anouk;
de Boer, Wietse;
van Veen, Johannes A.;
Garbeva, Paolina

Publication type:

Article

Genome-wide analysis of WRKY transcription factors in white pear (Pyrus bretschneideri) reveals evolution and patterns under drought stress.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2233-6

By:

Xiaosan Huang;
Kongqing Li;
Xiaoyong Xu;
Zhenghong Yao;
Cong Jin;
Shaoling Zhang

Publication type:

Article

Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2322-6

By:

de Castro Rodrigues Pappas, Marília;
Pappas Jr, Georgios Joannis;
Grattapaglia, Dario

Publication type:

Article

What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2313-7

By:

Whitacre, Lynsey K.;
Tizioto, Polyana C.;
JaeWoo Kim;
Sonstegard, Tad S.;
Schroeder, Steven G.;
Alexander, Leeson J.;
Medrano, Juan F.;
Schnabel, Robert D.;
Taylor, Jeremy F.;
Decker, Jared E.

Publication type:

Article

Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2276-8

By:

Bianconi, Irene;
Jeukens, Julie;
Freschi, Luca;
Alcalá-Franco, Beatriz;
Facchini, Marcella;
Boyle, Brian;
Molinaro, Antonio;
Kukavica-Ibrulj, Irena;
Tümmler, Burkhard;
Levesque, Roger C.;
Bragonzi, Alessandra

Publication type:

Article

Selection processes in simple sequence repeats suggest a correlation with their genomic location: insights from a fungal model system.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2274-x

By:

Gonthier, Paolo;
Sillo, Fabiano;
Lagostina, Elisa;
Roccotelli, Angela;
Cacciola, Olga Santa;
Stenlid, Jan;
Garbelotto, Matteo

Publication type:

Article

Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2237-2

By:

Dillon, Laura A. L.;
Suresh, Rahul;
Orah, Kwame;
Bravo, Hector Corrada;
Mosser, David M.;
El-Sayed, Najib M.

Publication type:

Article

A new strategy for enhancing imputation quality of rare variants from next-generation sequencing data via combining SNP and exome chip data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2192-y

By:

Young Jin Kim;
Juyoung Lee;
Bong-Jo Kim;
Taesung Park

Publication type:

Article

Chronic binge alcohol administration dysregulates global regulatory gene networks associated with skeletal muscle wasting in simian immunodeficiency virus-infected macaques.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2329-z

By:

Simon, Liz;
Hollenbach, Andrew D.;
Zabaleta, Jovanny;
Molina, Patricia E.

Publication type:

Article

Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2319-1

By:

Youko Horiuchi;
Yoshiaki Harushima;
Hironori Fujisawa;
Takako Mochizuki;
Masahiro Fujita;
Hajime Ohyanagi;
Nori Kurata

Publication type:

Article

Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2310-x

By:

Gordon, Jonathan L.;
Lefeuvre, Pierre;
Escalon, Aline;
Barbe, Valeérie;
Cruveiller, Stéphane;
Gagnevin, Lionel;
Pruvost, Olivier

Publication type:

Article

Genomic analysis of Luteimonas abyssi XH031<sup>T</sup>: insights into its adaption to the subseafloor environment of South Pacific Gyre and ecological role in biogeochemical cycle.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2326-2

By:

Li Zhang;
Xiaolei Wang;
Min Yu;
Yanlu Qiao;
Xiao-Hua Zhang

Publication type:

Article

Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2321-7

By:

Biselli, Chiara;
Bagnaresi, Paolo;
Cavalluzzo, Daniela;
Urso, Simona;
Desiderio, Francesca;
Orasen, Gabriele;
Gianinetti, Alberto;
Righettini, Federico;
Gennaro, Massimo;
Perrini, Rosaria;
Hassen, Manel Ben;
Sacchi, Gian Attilio;
Cattivelli, Luigi;
Valè, Giampiero

Publication type:

Article

Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2320-8

By:

Adjalley, Sophie H.;
Scanfeld, Daniel;
Kozlowski, Elyse;
Llinás, Manuel;
Fidock, David A.

Publication type:

Article

Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2215-8

By:

Tallafuss, Alexandra;
Kelly, Meghan;
Gay, Leslie;
Gibson, Dan;
Batzel, Peter;
Karfilis, Kate V.;
Eisen, Judith;
Stankunas, Kryn;
Postlethwait, John H.;
Washbourne, Philip

Publication type:

Article

Genetic differences among ethnic groups.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2328-0

By:

Tao Huang;
Yang Shu;
Yu-Dong Cai

Publication type:

Article

Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F).

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2327-1

By:

Bonilla, Martha L.;
Todd, Christopher;
Erlandson, Martin;
Andres, Jose

Publication type:

Article

Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2324-4

By:

Figueiredo, Henrique C. P.;
Soares, Siomar C.;
Pereira, Felipe L.;
Dorella, Fernanda A.;
Carvalho, Alex F.;
Teixeira, Júnia P.;
Azevedo, Vasco A. C.;
Leal, Carlos A. G.

Publication type:

Article

Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2318-2

By:

Lanubile, Alessandra;
Muppirala, Usha K.;
Severin, Andrew J.;
Marocco, Adriano;
Munkvold, Gary P.

Publication type:

Article

Phylogenetic analysis of human Chlamydia pneumoniae strains reveals a distinct Australian indigenous clade that predates European exploration of the continent.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2281-y

By:

Roulis, Eileen;
Bachmann, Nathan;
Humphrys, Michael;
Myers, Garry;
Huston, Wilhelmina;
Polkinghorne, Adam;
Timms, Peter

Publication type:

Article

cChIP-seq: a robust small-scale method for investigation of histone modifications.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2285-7

By:

Valensisi, Cristina;
Jo Ling Liao;
Andrus, Colin;
Battle, Stephanie L.;
David Hawkins, R.

Publication type:

Article

Genome-wide analysis, molecular cloning and expression profiling reveal tissuespecifically expressed, feedback-regulated, stress-responsive and alternatively spliced novel genes involved in gibberellin metabolism in Salvia miltiorrhiza.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2315-5

By:

Qing Du;
Caili Li;
Dongqiao Li;
Shanfa Lu

Publication type:

Article

De novo transcriptome sequencing and analysis of Coccinella septempunctata L. in non-diapause, diapause and diapauseterminated states to identify diapauseassociated genes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2309-3

By:

Xiaoyang Qi;
Lisheng Zhang;
Yanhua Han;
Xiaoyun Ren;
Jian Huang;
Hongyin Chen

Publication type:

Article

Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2288-4

By:

Rusinov, Ivan;
Ershova, Anna;
Karyagina, Anna;
Spirin, Sergey;
Alexeevski, Andrei

Publication type:

Article

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2287-5

By:

Humphreys, Christopher M.;
McLean, Samantha;
Schatschneider, Sarah;
Millat, Thomas;
Henstra, Anne M.;
Annan, Florence J.;
Breitkopf, Ronja;
Pander, Bart;
Piatek, Pawel;
Rowe, Peter;
Wichlacz, Alexander T.;
Woods, Craig;
Norman, Rupert;
Blom, Jochen;
Goesman, Alexander;
Hodgman, Charlie;
Barrett, David;
Thomas, Neil R.;
Winzer, Klaus;
Minton, Nigel P.

Publication type:

Article

SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2317-3

By:

Zautner, Andreas E.;
Goldschmidt, Anne-Marie;
Thürmer, Andrea;
Schuldes, Jörg;
Bader, Oliver;
Lugert, Raimond;
Groß, Uwe;
Stingl, Kerstin;
Salinas, Gabriela;
Lingner, Thomas

Publication type:

Article

The transcriptional profile of coronary arteritis in Kawasaki disease.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2323-5

By:

Rowley, Anne H.;
Wylie, Kristine M.;
Kim, Kwang-Youn A.;
Pink, Adam J.;
Yang, Amy;
Reindel, Rebecca;
Baker, Susan C.;
Shulman, Stanford T.;
Orenstein, Jan M.;
Lingen, Mark W.;
Weinstock, George M.;
Wylie, Todd N.

Publication type:

Article

Bacterial small RNAs in the Genus Rickettsia.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2293-7

By:

Schroeder, Casey L. C.;
Narra, Hema P.;
Rojas, Mark;
Sahni, Abha;
Patel, Jignesh;
Khanipov, Kamil;
Wood, Thomas G.;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article

Genome editing through large insertion leads to the skipping of targeted exon.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2284-8

By:

Uddin, Borhan;
Nan-Peng Chen;
Panic, Marko;
Schiebel, Elmar

Publication type:

Article

Alignment behaviors of short peptides provide a roadmap for functional profiling of metagenomic data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2272-z

By:

Sinha, Rohita;
Clarke, Jennifer;
Benson, Andrew K.

Publication type:

Article

An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2242-5

By:

Hongjun Liu;
Yongchao Niu;
Gonzalez-Portilla, Pedro J.;
Huangkai Zhou;
Liya Wang;
Tao Zuo;
Cheng Qin;
Shuaishuai Tai;
Constantin Jansen;
Yaou Shen;
Haijian Lin;
Michael Lee;
Ware, Doreen;
Zhiming Zhang;
Lübberstedt, Thomas;
Guangtang Pan

Publication type:

Article

Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2260-3

By:

Jayavelu, Naresh Doni;
Bar, Nadav

Publication type:

Article

Dintor: functional annotation of genomic and proteomic data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2279-5

By:

Weichenberger, Christian X.;
Blankenburg, Hagen;
Palermo, Antonia;
D'Elia, Yuri;
König, Eva;
Bernstein, Erik;
Domingues, Francisco S.

Publication type:

Article

Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2292-8

By:

Alexandre, Pamela A.;
Kogelman, Lisette J. A.;
Santana, Miguel H. A.;
Passarelli, Danielle;
Pulz, Lidia H.;
Fantinato-Neto, Paulo;
Silva, Paulo L.;
Leme, Paulo R.;
Strefezzi, Ricardo F.;
Coutinho, Luiz L.;
Ferraz, José B. S.;
Eler, Joanie P.;
Kadarmideen, Haja N.;
Fukumasu, Heidge

Publication type:

Article

Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntington's disease are not reflected in mutant Huntingtin inclusion prevalence.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2251-4

By:

Bayram-Weston, Zubeyde;
Stone, Timothy C.;
Giles, Peter;
Elliston, Linda;
Janghra, Nari;
Higgs, Gemma V.;
Holmans, Peter A.;
Dunnett, Stephen B.;
Brooks, Simon P.;
Jones, Lesley

Publication type:

Article

Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2283-9

By:

Redekar, Neelam R.;
Biyashev, Ruslan M.;
Jensen, Roderick V.;
Helm, Richard F.;
Grabau, Elizabeth A.;
Saghai Maroof, M. A.

Publication type:

Article

Transcriptomic analysis reveals specific osmoregulatory adaptive responses in gill mitochondria-rich cells and pavement cells of the Japanese eel.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2271-0

By:

Keng Po Lai;
Jing-Woei Li;
Je Gu;
Ting-Fung Chan;
Ka Fai Tse, William;
Kong Chu Wong, Chris

Publication type:

Article

A comparison of the transcriptome of Drosophila melanogaster in response to entomopathogenic fungus, ionizing radiation, starvation and cold shock.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S13-S8

By:

Moskalev, Alexey;
Zhikrivetskaya, Svetlana;
Krasnov, George;
Shaposhnikov, Mikhail;
Proshkina, Ekaterina;
Borisoglebsky, Dmitry;
Danilov, Anton;
Peregudova, Darya;
Sharapova, Irina;
Dobrovolskaya, Eugenia;
Solovev, Ilya;
Zemskaya, Nadezhda;
Shilova, Lyubov;
Snezhkina, Anastasia;
Kudryavtseva, Anna

Publication type:

Article

Analysis of functional importance of binding sites in the Drosophila gap gene network model.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S13-S7

By:

Kozlov, Konstantin;
Gursky, Vitaly V.;
Kulakovskiy, Ivan V.;
Dymova, Arina;
Samsonova, Maria

Publication type:

Article

Comparison of American mink embryonic stem and induced pluripotent stem cell transcriptomes.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S13-S6

By:

Menzorov, Aleksei G.;
Matveeva, Natalia M.;
Markakis, Marios N.;
Fishman, Venyamin S.;
Christensen, Knud;
Khabarova, Anna A.;
Pristyazhnyuk, Inna E.;
Kizilova, Elena A.;
Cirera, Susanna;
Anistoroaei, Razvan;
Serov, Oleg L.

Publication type:

Article