Works about RNA sequencing
Results: 5000
RBIS as a prognostic biomarker for progression-free survival in prostate cancer: insights from bioinformatics and immune infiltration analysis.
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- Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02083-4
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- Article
Unveiling novel susceptibility genes and drug targets for basal cell carcinoma by a cross-tissue transcriptome-wide association study.
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- Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02019-y
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- Article
Corrigendum: The role of epigenetic regulation in pancreatic ductal adenocarcinoma progression and drug response: an integrative genomic and pharmacological prognostic prediction model.
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- 2025
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- Correction Notice
Molecular subtyping of stage I lung adenocarcinoma via molecular alterations in pre-invasive lesion progression.
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- Journal of Translational Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12967-025-06316-6
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- Article
cfDiffusion: diffusion-based efficient generation of high quality scRNA-seq data with classifier-free guidance.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf071
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- Article
Inferring the genetic relationships between unsupervised deep learning–derived imaging phenotypes and glioblastoma through multi-omics approaches.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf037
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- Article
B-Lightning: using bait genes for marker gene hunting in single-cell data with complex heterogeneity.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf033
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Cell-type deconvolution for bulk RNA-seq data using single-cell reference: a comparative analysis and recommendation guideline.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf031
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- Article
Post-transcriptional regulation supports the homeostatic expression of mature RNA.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf027
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- Article
scGO: interpretable deep neural network for cell status annotation and disease diagnosis.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf018
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- Article
TRIAGE: an R package for regulatory gene analysis.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbaf004
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- Article
Deep learning in integrating spatial transcriptomics with other modalities.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae719
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- Article
CellMsg: graph convolutional networks for ligand–receptor-mediated cell-cell communication analysis.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae716
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- Article
The network structural entropy for single-cell RNA sequencing data during skin aging.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae698
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- Article
Complex hierarchical structures analysis in single-cell data with Poincaré deep manifold transformation.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae687
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- Article
RNA-ModX: a multilabel prediction and interpretation framework for RNA modifications.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae688
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- Article
CPARI: a novel approach combining cell partitioning with absolute and relative imputation to address dropout in single-cell RNA-seq data.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae668
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- Article
Bayesian unsupervised clustering identifies clinically relevant osteosarcoma subtypes.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae665
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- Article
scRGCL: a cell type annotation method for single-cell RNA-seq data using residual graph convolutional neural network with contrastive learning.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae662
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- Article
A novel computational model ITHCS for enhanced prognostic risk stratification in ESCC by correcting for intratumor heterogeneity.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae631
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- Article
VGAE-CCI: variational graph autoencoder-based construction of 3D spatial cell–cell communication network.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae619
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- Article
Effect of benralizumab on histopathology and inflammatory signatures in a clinical cohort of eosinophilic esophagitis.
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- Diseases of the Esophagus, 2025, v. 38, n. 1, p. 1, doi. 10.1093/dote/doae031
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- Article
Correction: Computational reassessment of RNA-seq data reveals key genes in active tuberculosis.
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- 2025
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- Correction Notice
Harmonizing and integrating the NCI Genomic Data Commons through accessible, interactive, and cloud-enabled workflows.
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- PLoS ONE, 2025, v. 20, n. 3, p. 1, doi. 10.1371/journal.pone.0318676
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- Article
Deciphering ovarian cancer heterogeneity through spatial transcriptomics, single-cell profiling, and copy number variations.
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- PLoS ONE, 2025, v. 20, n. 3, p. 1, doi. 10.1371/journal.pone.0317115
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- Article
Single-cell transcriptomics of clinical grade adipose-derived regenerative cells reveals consistency between donors independent of gender and BMI.
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- Stem Cell Research & Therapy, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s13287-025-04234-4
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- Article
The role of epigenetic regulation in pancreatic ductal adenocarcinoma progression and drug response: an integrative genomic and pharmacological prognostic prediction model.
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- Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2024.1498031
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- Article
WCSGNet: a graph neural network approach using weighted cell-specific networks for cell-type annotation in scRNA-seq.
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- Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1553352
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- Article
Understanding the early molecular changes associated with radiation therapy—A preliminary bulk RNA sequencing study.
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- PLoS ONE, 2025, v. 20, n. 3, p. 1, doi. 10.1371/journal.pone.0316443
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- Article
Leveraging prior knowledge to infer gene regulatory networks from single-cell RNA-sequencing data.
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- Molecular Systems Biology, 2025, v. 21, n. 3, p. 214, doi. 10.1038/s44320-025-00088-3
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- Article
Single cell transcriptomic analysis reveals tumor immune infiltration by macrophage cells gene signature in lung adenocarcinoma.
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- Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-01834-7
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- Article
Bulked Segregant RNA Sequencing (BSR-Seq) Combined with SNP Genotyping Towards Mapping and Characterization of a Purple Blotch Resistance Gene in Onion (Allium cepa L.).
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- Plant Molecular Biology Reporter, 2025, v. 43, n. 1, p. 139, doi. 10.1007/s11105-024-01466-1
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- Article
Reawakening inflammation in the chronically injured spinal cord using lipopolysaccharide induces diverse microglial states.
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- Journal of Neuroinflammation, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12974-025-03379-6
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- Article
Association between cancer-associated fibroblasts and prognosis of neoadjuvant chemoradiotherapy in esophageal squamous cell carcinoma: a bioinformatics analysis based on single-cell RNA sequencing.
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- Cancer Cell International, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12935-025-03709-x
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- Article
Bioinformatics analysis of shared biomarkers and immune pathways of preeclampsia and periodontitis.
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- BMC Pregnancy & Childbirth, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12884-025-07277-w
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- Article
Cytotoxic KLRG1+ IL-7R- effector CD8+ T cells distinguish kidney transplant recipients controlling cytomegalovirus reactivation.
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- Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1542531
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LETSmix: a spatially informed and learning-based domain adaptation method for cell-type deconvolution in spatial transcriptomics.
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- Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01442-8
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- Article
Single-Cell RNA Sequencing to Guide Autologous Preterm Cord Mesenchymal Stromal Cell Therapy.
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- American Journal of Respiratory & Critical Care Medicine, 2025, v. 211, n. 3, p. 391, doi. 10.1164/rccm.202403-0569OC
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- Article
Lsm2 is critical to club cell proliferation and its inhibition aggravates COPD progression.
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- Respiratory Research, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12931-025-03126-8
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- Article
The Endothelial Cell-Related Genes EIF1 and HSPA1B Contribute to the Pathogenesis of Alzheimer's Disease by Modulating Peripheral Immunoinflammatory Responses.
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- Brain Sciences (2076-3425), 2025, v. 15, n. 2, p. 205, doi. 10.3390/brainsci15020205
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- Article
RNA-Binding Protein Signature in Proliferative Cardiomyocytes: A Cross-Species Meta-Analysis from Mouse, Pig, and Human Transcriptomic Profiling Data.
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- Biomolecules (2218-273X), 2025, v. 15, n. 2, p. 310, doi. 10.3390/biom15020310
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- Article
Universal First-Trimester Screening Biomarkers for Diagnosis of Preeclampsia and Placenta Accreta Spectrum.
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- Biomolecules (2218-273X), 2025, v. 15, n. 2, p. 228, doi. 10.3390/biom15020228
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- Article
Single-Cell RNA-Sequencing Analysis Provides Insights into IgA Nephropathy.
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- Biomolecules (2218-273X), 2025, v. 15, n. 2, p. 191, doi. 10.3390/biom15020191
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- Article
Intracerebral Hemorrhage-Associated Iron Release Leads to Pericyte-Dependent Cerebral Capillary Function Disruption.
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- Biomolecules (2218-273X), 2025, v. 15, n. 2, p. 164, doi. 10.3390/biom15020164
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Integrated Transcriptome and Targeted Metabolome for Resolving Flavonoid Biosynthesis in Figs (Ficus carica Linn.).
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- Biology (2079-7737), 2025, v. 14, n. 2, p. 184, doi. 10.3390/biology14020184
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Prevention and Treatment of Peritoneal Dialysis-Associated Fibrosis with Intraperitoneal Anti-Fibrotic Therapy in Experimental Peritoneal Fibrosis.
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- Pharmaceuticals (14248247), 2025, v. 18, n. 2, p. 188, doi. 10.3390/ph18020188
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- Article
Developmental Expression Patterns of miRNA in Mythimna separata Walker (Lepidotera: Noctuidae).
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- Genes, 2025, v. 16, n. 2, p. 234, doi. 10.3390/genes16020234
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- Article
Differentially Expressed Genes in Cardiomyocytes of the First Camelized Mouse Model, Nrap c.255ins78 Mouse.
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- Genes, 2025, v. 16, n. 2, p. 142, doi. 10.3390/genes16020142
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- Article
Transcriptomic Response of Balamuthia mandrillaris to Lippia graveolens Extract Fractions.
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- Microbiology Research, 2025, v. 16, n. 2, p. 40, doi. 10.3390/microbiolres16020040
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RNA Sequencing Dataset of Drosophila Nociceptor Translatomic Response to Injury.
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- Data (2306-5729), 2025, v. 10, n. 2, p. 11, doi. 10.3390/data10020011
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- Article