Works about RNA sequencing

Results: 5000

Mineralocorticoid receptor knockout alters hippocampal CA2 neurons to become like those in CA1.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08378-0

By:

Harris, Erin P.;
Kandemir, Başak;
Jones, Stephanie M.;
Alexander, Georgia M.;
Ward, James M.;
Wang, TianYuan;
Proaño, Stephanie;
Xu, Xin;
Dudek, Serena M.

Publication type:

Article

Molecular landscape of respiratory infection: A large-scale, multi-centre blood transcriptome dataset.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05488-6

By:

Chew, Tracy;
Pelaia, Tiana M.;
Phu, Amy L.;
Teoh, Sally;
Wang, Ya;
Deshpande, Nandan;
Kim, Karan;
Herwanto, Velma;
Gunawan;
Karvunidis, Thomas;
Zerbib, Yoann;
Short, Kirsty R.;
Macdonald, Stephen;
Thevarajan, Irani;
Rinchai, Darawan;
Kuan, Win Sen;
Knippenberg, Ben;
Iredell, Jonathan;
Britton, Philip N.;
Hutchings, Owen

Publication type:

Article

Amplification of select autonomous HERV loci and surrounding host gene transcription in monocytes from patients with post-acute sequelae of COVID-19.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1621657

By:

Koo, Hyunmin;
Morrow, Casey D.

Publication type:

Article

Integrated analysis of single-cell RNA-seq and spatial transcriptomics to identify the lactylation-related protein TUBB2A as a potential biomarker for glioblastoma in cancer cells by machine learning.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1601533

By:

Xu, Yifan;
Zhang, Chonghui;
Wu, Jinpeng;
Guo, Pin;
Jiang, Nan;
Wang, Chao;
Feng, Yugong

Publication type:

Article

Enhancing fibroblast–epithelial cell communications: Serpine2 as a key molecule in Fusobacterium nucleatum –promoted colon cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1563922

By:

Li, Xueke;
Luo, Simin;
Jiang, Yifang;
Ma, Qiong;
You, Fengming;
Kuang, Qixuan;
Fu, Xi;
Zheng, Chuan

Publication type:

Article

NUF2 and NEK2 promote malignant progression of gallbladder cancer by remodeling the extracellular matrix Open Access.

Published in:

Carcinogenesis, 2025, v. 46, n. 2, p. 1, doi. 10.1093/carcin/bgaf019

By:

Gao, Ming;
Ye, Peng;
Zhang, Yutong;
Guo, Yarong;
Xu, Jun

Publication type:

Article

P.158 Molecular characterization of RTOG-0539 risk groups in meningioma: insights into radiotherapy response and tumor biology.

Published in:

2025

By:

Yefet, L;
Landry, A;
Wang, J;
Liu, J;
Patil, V;
Gui, C;
Ellenbogen, Y;
Ajisebutu, A;
Nassiri, F;
Zadeh, G

Publication type:

Abstract

F.2 Single cell CRISPR/Cas-9 lineage tracing reveals fitness axis in glioblastoma.

Published in:

2025

By:

Ajisebutu, A;
Fan, F;
Gui, C;
Ellenbogen, Y;
Landry, A;
Wei, Q;
Patil, V;
Liu, J;
Nassiri, F;
Zadeh, G

Publication type:

Abstract

C.5 The generation of alternative transcripts as a method of regulating phosphorylation in Sonic Hedgehog (Shh) Subtype Medulloblastoma (MB).

Published in:

2025

By:

Ogawa, K;
Chahin, A;
Purzner, J;
Purzner, T

Publication type:

Abstract

Viral-Track integrated single-cell RNA-sequencing reveals HBV lymphotropism and immunosuppressive microenvironment in HBV-associated hepatocellular carcinoma.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08443-8

By:

Liu, Zhepeng;
Naz, Wajeeha;
Yousaf, Tanzeel;
Sun, Junwei;
Wu, Qijia;
Guo, Mingxiong;
Tian, Geng;
Sun, Guihong

Publication type:

Article

Leveraging machine learning models to evaluate immune infiltration in the ovarian cancer microenvironment: a single-cell analysis approach.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03018-9

By:

Liu, Jie;
Xia, Baoguo;
Li, Bingxin;
Liang, Hui

Publication type:

Article

Cooling Blood and Detoxicating Formula Treats Psoriasis Through RHCG‐Related Mechanisms.

Published in:

International Journal of Genomics, 2025, v. 2025, p. 1, doi. 10.1155/ijog/5132158

By:

Zhang, Qian;
Huang, Juan;
Feng, Cheng-cheng;
Liu, Yuan-jie;
Yang, Ning;
Zou, Xi;
Ji, Chen;
Guo, Shun;
Shen, Hui;
Mohammadi, Saeed

Publication type:

Article

A GSH-consuming polymeric nanoparticles drives ferroptosis amplification and combines chemotherapy to amplify breast cancer treatment.

Published in:

Journal of Nanobiotechnology, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12951-025-03569-7

By:

Pei, Mingliang;
Guan, Xin;
Hou, Xiaodong;
Niu, Zhiyuan;
Lyu, Qi;
Wang, Kai;
Wang, Shanshan;
Zhang, Jingkai;
Ke, Yun;
Zhuang, Shuting;
Chen, Jie;
Xu, Huixiong;
Yang, Fan

Publication type:

Article

Two-way transcriptome approach for the identification of common gene targets across four insect orders and its validation in Oxycarenus laetus.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08880-9

By:

Mathari, Julie Rebecca Joseph;
Mohideen, Habeeb Shaik

Publication type:

Article

Single-cell RNA sequencing dataset of hearts from wild type and Cyp26b1 knockout mouse embryos.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05497-5

By:

Zhang, Zhao;
Chen, Xueting;
Su, Shuxin;
Chen, Silian;
Pang, Li;
Shen, Juan;
Fang, Xiaodong;
Zhang, Zhe

Publication type:

Article

Investigating the role of tumor cell heterogeneity and angiogenesis genes in the prognosis of multiple myeloma.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1610833

By:

Qiao, Xue;
Song, Zhengrong;
Geng, Li;
Xing, Lina;
Wang, Ying

Publication type:

Article

RNA-sequencing studies suggest that microRNAs and alternative splicing of pre-mRNAs modulate immune and inflammatory responses in Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1597736

By:

Badia-Bringué, Gerard;
Alonso-Hearn, Marta

Publication type:

Article

Generation of a new Paneth cell–specific Cre -recombinase transgenic mouse line.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1576995

By:

Garcia-Gonzalez, Natalia;
Wallaeys, Charlotte;
Toussaint, Wendy;
Hochepied, Tino;
Dewaele, Sylviane;
De Beul, Somara;
Van Loke, Robin;
Vandewalle, Jolien;
Timmermans, Steven;
Libert, Claude

Publication type:

Article

SIRT7 deletion inhibits Glaesserella parasuis -mediated inflammatory responses in porcine alveolar macrophages.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1589199

By:

Zheng, Hao;
Wang, Baoxin;
Dong, Xia;
Wu, Junjing;
Shi, Liangyu;
Zhang, Jing;
Chen, Hongbo;
Zhou, Ao

Publication type:

Article

UHPLC-QTOF-MS-based metabolomics joint high-throughput RNA sequencing transcriptomics approach for the analysis of fecal and liver biological samples and application in a case study for the mechanism of Qing-Kai-Ling oral liquid in treating MASLD.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 17, p. 3777, doi. 10.1007/s00216-025-05892-2

By:

Cai, Kaiwei;
Chen, Zihao;
Wu, Jingyun;
Yu, Jingtao;
Chen, Jingheng;
Zhou, Xiaoqin;
Pan, Biyan;
Xie, Zhiyong;
Wang, Qiuyun;
Li, Pei;
Liao, Qiongfeng

Publication type:

Article

Sex-biased expression of sex-linked transcripts in spiny frogs with homomorphic sex chromosomes.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11846-w

By:

Xiao, Yu;
Xia, Yun;
Zeng, Xiaomao

Publication type:

Article

Alternative splicing factor RAB3IP as a novel risk signature to predict the prognosis of colorectal cancer.

Published in:

Journal of Cancer, 2025, v. 16, n. 9, p. 2959, doi. 10.7150/jca.110271

By:

Zhengwei Zhou;
Fei Gao;
Han Lei;
Haixuan Wen;
Jiaxi Tang;
Yulong Peng;
Lili Fan;
Lu Xu;
Guang Shu

Publication type:

Article

Multi-Omics Analysis Reveals the transforming growth factor-β Signaling-Driven Multicellular Interactions with Prognostic Relevance in Cervical Cancer Progression.

Published in:

Journal of Cancer, 2025, v. 16, n. 9, p. 2857, doi. 10.7150/jca.114505

By:

Yuhan Wang;
Guangxu Cao;
Huimin Zeng;
Yong Zhi;
Mengting Xu;
Ying Wang;
Min Liu;
Yetian Ruan;
Ka Yu Tse;
Qingfeng Zhang;
Jinli Gao;
Zhiqiang Han;
Fang Li

Publication type:

Article

Integrating Bulk RNA Sequencing and CRISPR-Cas9 Screening to Identify Proliferation-Related Genes for Prognostic Stratification in Breast Cancer.

Published in:

Journal of Cancer, 2025, v. 16, n. 9, p. 2800, doi. 10.7150/jca.113348

By:

Guixin Wang;
Junming Cao;
Yuxin Zhu;
Shuo Wang;
Yingxi Li;
Yue Yu;
Yao Tian;
Xuchen Cao;
Xin Wang

Publication type:

Article

Screening Study on the Anti-Angiogenic Effects of Traditional Chinese Medicine -- Part II: Wild Chrysanthemum.

Published in:

Journal of Cancer, 2021, v. 12, n. 1, p. 124, doi. 10.7150/jca.52971

By:

Xiang Tu;
He Bin Wang;
Qun Huang;
Yi Cai;
Yuan Ping Deng;
Zhe Yong;
Quan Hu;
Jian Feng;
Jordan, James B.;
Sen Zhong

Publication type:

Article

Specific MiRNAs in naïve T cells associated with Hepatitis C Virus-induced Hepatocellular Carcinoma.

Published in:

Journal of Cancer, 2021, v. 12, n. 1, p. 1, doi. 10.7150/jca.49594

By:

Peng Yan;
Pengfei Pang;
Xiaojun Hu;
Ani Wang;
Huitao Zhang;
Yingdong Ma;
Ke Zhang;
Yaochao Ye;
Bin Zhou;
Junjie Mao

Publication type:

Article

Dishevelled-1 regulates global transcriptomic changes and associates with ETS1 transcription factor.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61551-1

By:

Martinez-Marin, Dalia;
Sharma, Monica;
van Wunnik, Jenna C.;
Sardela de Miranda, Flávia;
Boligala, Geetha Priya;
Jull, Ella C.;
Stroman, Grace C.;
Babcock, Rachel L.;
Pruitt, Kevin

Publication type:

Article

Correction: Transcriptomic changes behind Sparus aurata hepatic response to different aquaculture challenges: An RNA-seq study and multiomics integration.

Published in:

2025

By:

Raposo de Magalhães, Cláudia;
Sandoval, Kenneth;
Kagan, Ferenc;
McCormack, Grace;
Schrama, Denise;
Carrilho, Raquel;
Farinha, Ana Paula;
Cerqueira, Marco;
Rodrigues, Pedro M.

Publication type:

Correction Notice

Differential Expression of Hormone‐Related Genes in the Heads of Adult and Nymphal Woodroaches (Cryptocercus).

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2025, v. 344, n. 4, p. 182, doi. 10.1002/jez.b.23290

By:

Hanada, Takumi;
Yaguchi, Hajime;
Fujiwara, Kokuto;
Hayashi, Yoshinobu;
Nalepa, Christine A.;
Maekawa, Kiyoto

Publication type:

Article

Extending the IMQ Model: Deep Characterization of the Human TLR7 Response for Early Drug Development.

Published in:

Inflammation, 2025, v. 48, n. 3, p. 1366, doi. 10.1007/s10753-024-02127-x

By:

van den Noort, Juliette A.;
Assil, Salma;
Ronner, Micha N.;
Osse, Michelle;
Pot, Iris;
Yavuz, Yalçin;
Damman, Jeffrey;
Lubberts, Erik;
Rissmann, Robert;
der Kolk, Tessa Niemeyer-van;
Tomljanovic, Ingrid;
Jansen, Manon A. A.;
Moerland, Matthijs

Publication type:

Article

NDRG2 Deficiency Exacerbates UVB-Induced Skin Inflammation and Oxidative Stress Damage.

Published in:

Inflammation, 2025, v. 48, n. 3, p. 1313, doi. 10.1007/s10753-024-02121-3

By:

Zhang, Lixia;
Gu, Weijie;
Liu, Tian;
Pei, Haina;
Ma, Yulong;
Zhao, Yi;
Huang, Sha;
Chen, Minliang

Publication type:

Article

Single-cell transcriptomic analysis identifies systemic immunosuppressive myeloid cells and local monocytes/macrophages as key regulators in polytrauma-induced immune dysregulation.

Published in:

Bone Research, 2025, v. 13, n. 1, p. 1, doi. 10.1038/s41413-025-00444-x

By:

Maniar, Drishti;
Keenum, M. Cole;
Vantucci, Casey E.;
Guyer, Tyler;
Chatterjee, Paramita;
Leguineche, Kelly;
Cheung, Kaitlyn;
Guldberg, Robert E.;
Roy, Krishnendu

Publication type:

Article

Reduced somatosensory innervation alters the skeletal transcriptome at a single cell level in a mouse model of type 2 diabetes.

Published in:

Bone Research, 2025, v. 13, n. 1, p. 1, doi. 10.1038/s41413-025-00436-x

By:

Cherief, Masnsen;
Gomez-Salazar, Mario;
Kang, Minjung;
Lee, Seungyong;
Ramesh, Sowmya;
Qin, Qizhi;
Xu, Mingxin;
Kim, Soohyun;
Archer, Mary;
Zhu, Manyu;
Hoke, Ahmet;
James, Aaron W.

Publication type:

Article

Cathepsin H increases the risk of diabetic retinopathy: evidence from Mendelian randomization and bioinformatic analysis.

Published in:

Diabetology & Metabolic Syndrome, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13098-025-01829-y

By:

Song, Xiudao;
Ma, Jin;
Zou, Ting;
Lu, Rong Xin;
Ji, Wei;
Huang, Fei;
Yin, Meiqi

Publication type:

Article

Investigating the Relationship between Ulcerative Colitis and Circadian Rhythm Genes Using Bioinformatics Analysis and Machine Learning.

Published in:

International Journal of General Medicine, 2025, v. 18, p. 3239, doi. 10.2147/IJGM.S521565

By:

Wang, Jianghao;
You, Meiyi;
Li, Jichang;
Wang, Xin;
Liu, Yucun;
Chen, Shanwen;
Wang, Pengyuan

Publication type:

Article

Unraveling the oxidative stress landscape in diabetic foot ulcers: insights from bulk RNA and single-cell RNA sequencing data.

Published in:

Biology Direct, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13062-025-00672-5

By:

Lin, Jialiang;
Huang, Linjuan;
Li, Weiming;
Xiao, Haijun;
Pan, Mingmang

Publication type:

Article

CAF-derived exosomal miR-196b-5p after androgen deprivation therapy promotes epithelial-mesenchymal transition in prostate cancer cells through HOXC8/NF-κB signaling pathway.

Published in:

Biology Direct, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13062-025-00667-2

By:

Song, Xiaodong;
Li, Tiewen;
Zhou, Wenhao;
Feng, Chengling;
Zhou, Zeng;
Chen, Yuanming;
Li, Deng;
Chen, Lei;
Zhao, Jing;
Zhang, Yu;
Han, Bangmin

Publication type:

Article

Development of a Starvation Response–Based Model and Its Application in Prognostic Assessment of Liver Hepatocellular Carcinoma.

Published in:

Mediators of Inflammation, 2025, v. 2025, p. 1, doi. 10.1155/mi/8828435

By:

Hu, Xinjun;
Liu, Yafeng;
Zhang, Shujun;
Liu, Kaijie;
Gu, Xinyu;
Jinhui, Liu

Publication type:

Article

Taurine-mediated metabolic immune crosstalk indicates and promotes immunosuppression with anti-PD-1 resistance in bladder cancer.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1618439

By:

Liang, Zhengfang;
Nong, Fengwei;
Li, Zhenjie;
Chen, Runmin;
Zhao, Haoxu;
Huang, Yongping

Publication type:

Article

Dual single-cell and bulk RNA sequencing reveal transcriptional profiles underlying heterogenous host-parasite interactions in human peripheral blood mononuclear cells.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1582645

By:

Chandrasegaran, Praveena;
Faydaci, Bekir;
Shih, Barbara;
Hassan, Musa A.

Publication type:

Article

Molecular insights into glioblastoma progression: role of CHCHD2P9 in tumor heterogeneity and prognosis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1581850

By:

Ding, Yanyu;
Xiao, Lizhi;
Zhou, Xiaoling;
Zhao, Jiaxin;
Ke, Jianli;
Cai, Huabao;
Zhao, Mengyu;
Wang, Cunzhi;
Yu, Tianhang;
Zhao, Zhijie;
Wang, Yucai;
Ke, Jiyuan

Publication type:

Article

Alterations in the humoral immunophenotype in sickle cell disease.

Published in:

British Journal of Haematology, 2025, v. 206, n. 6, p. 1774, doi. 10.1111/bjh.20089

By:

Vistica Sampino, E.;
Bonal, D. M.;
Chorzalska, A.;
Morgan, J.;
Nguyen, L.;
Yu, C.;
Rodriguez, A.;
De Vito, R.;
Pels, S.;
Sprinz, P. G.;
McGann, P.;
Lulla, R. R.;
Dubielecka, P. M.

Publication type:

Article

Fibroblast transcriptomics uncovers pathogenic genomic variants in individuals with exome‐negative childhood onset epilepsy.

Published in:

Epilepsia (Series 4), 2025, v. 66, n. 5, p. 1613, doi. 10.1111/epi.18279

By:

Smal, Noor;
Millevert, Charissa;
De Wachter, Matthias;
De Vriendt, Els;
Eddafir, Zakaria;
Schoonjans, An‐Sofie;
Bayat, Allan;
Møller, Rikke Steensbjerre;
Mei, Davide;
Balestrini, Simona;
Guerrini, Renzo;
Meeuwissen, Marije E. C.;
Jansen, Anna C.;
Weckhuysen, Sarah

Publication type:

Article

Quercetin nanoformulation-embedded hydrogel inhibits osteopontin mediated ferroptosis for intervertebral disc degeneration alleviation.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03574-w

By:

Li, Jitian;
Ren, Lemeng;
Wan, Lei;
Liu, Man;
Zhao, Mingyu;
Lin, Yazhou;
Zheng, Jiancheng;
Tang, Yun;
Luo, Yage;
Ma, Yan;
Wang, Lei;
Cao, Peng;
Chen, Zhe;
Ren, Wenjie;
Wang, Fei

Publication type:

Article

Molecular mechanism and biological pathway of high-expressed RAD51 in regulating cell adhesion and potentially affecting oral squamous cell carcinoma.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-03085-y

By:

Tang, Yu-Xing;
Pang, Yu-Yan;
Cui, Yan;
Wu, Guo-Jiao;
Huang, Lin-Qing;
Zhou, Chang-Zhan;
Li, Bin;
Li, Qi;
Chi, Bang-Teng;
He, Rong-Quan;
Qin, Di-Yuan;
Li, Jian-Di;
Chen, Gang;
Li, Dong-Ming;
Dang, Yi-Wu

Publication type:

Article

Integrating single-cell and spatial transcriptomics reveals the cellular heterogeneity of vestibular schwannoma.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01028-y

By:

Dong, Wenqi;
Jin, Yuchen;
Dong, Lingkang;
Jiang, Yumeng;
Li, Zhuangzhuang;
Xu, Maoxiang;
Wang, Jingjing;
Liu, Feng;
Yu, Dongzhen

Publication type:

Article

Transcriptional profiling clarifies a program of enzalutamide extreme non-response in lethal prostate cancer.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01002-8

By:

Kumaraswamy, Anbarasu;
Hu, Ya-Mei;
Yates, Joel A.;
Zhang, Chao;
Rodansky, Eva;
Khokhani, Dhruv;
Flores, Diana;
Duan, Zhi;
Zhang, Yi;
Tabatabaei, Shaadi;
Slottke, Rachel;
Ye, Shangyuan;
Lara, Primo;
Foye, Adam;
Ryan, Charles J.;
Quigley, David A.;
Huang, Jiaoti;
Aggarwal, Rahul;
Reiter, Robert E.;
Wicha, Max S.

Publication type:

Article

The reprogramming impact of SMAC-mimetic on glioblastoma stem cells and the immune tumor microenvironment evolution.

Published in:

Journal of Experimental & Clinical Cancer Research (17569966), 2025, v. 44, n. 1, p. 1, doi. 10.1186/s13046-025-03452-1

By:

Wu, Qiong;
Chen, Jianan;
Berglund, Anders E.;
Du, Dongliang;
Macaulay, Robert J.;
Etame, Arnold B.

Publication type:

Article

Applications of spatial transcriptomics in studying spermatogenesis.

Published in:

Andrology, 2025, v. 13, n. 5, p. 1181, doi. 10.1111/andr.70043

By:

Xu, Qianlan;
Chen, Haiqi

Publication type:

Article

Loss of lncRNAs 1700101O22Rik and 1700027A15Rik causes sperm malformation and subfertility.

Published in:

Andrology, 2025, v. 13, n. 5, p. 1223, doi. 10.1111/andr.70011

By:

Dong, Shijue;
Cai, Ziyi;
Yu, Jingyan;
Liang, Min;
Zhou, Yang;
Ding, Mengqian;
Zeng, Xuhui;
Zhang, Xiaoning

Publication type:

Article