Works about PROTEIN conformation

Results: 2005

Heat Shock Protein and Disaggregase Influencing the Casein Structuralisation.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6360, doi. 10.3390/ijms26136360

By:

Roterman, Irena;
Stapor, Katarzyna;
Dułak, Dawid;
Konieczny, Leszek

Publication type:

Article

Deciphering the 3D Structural Characterization of Gonadotropin-Releasing Hormone in Tenualosa ilisha Using Homology Modeling, Molecular Dynamics, and Docking Approaches.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6098, doi. 10.3390/ijms26136098

By:

Panda, Soumya Prasad;
Das, Basanta Kumar;
Gadnayak, Ayushman;
Nandy, Saurav Kumar;
Kumar, Vikash;
Pradhan, Smruti Priyambada;
Raut, Subhashree Subhasmita;
Chakrabarty, Ratul;
Kunui, Arghya;
Sahoo, Amiya Kumar

Publication type:

Article

Improvement of Myofibrillar Protein Gel Properties After Freezing–Thawing by Magnesium Ions and Sorbitol: Synergistic Effects of Ionic Bridges and Hydrogen Bonds.

Published in:

Food & Bioprocess Technology, 2025, v. 18, n. 7, p. 6621, doi. 10.1007/s11947-025-03833-6

By:

Xiang, Jun;
Luo, Na;
Guo, Chaofan;
Zhang, Yuxiang;
Chen, Xin;
Wang, Xingwei;
Yin, Xiaoyu;
Wang, Xuejiao;
Cao, Jianxin

Publication type:

Article

Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60759-5

By:

Lee, Myeongsang;
Schafer, Joseph W.;
Prabakaran, Jeshuwin;
Chakravarty, Devlina;
Clore, Madeleine F.;
Porter, Lauren L.

Publication type:

Article

Molecular Detection of tox A Gene in Multidrug Resistance Pseudomonas aeruginosa Isolated from Burn Infections.

Published in:

Medical Journal of Babylon, 2025, v. 22, n. 2, p. 327, doi. 10.4103/MJBL.MJBL_172_23

By:

Merza, Zahraa Hamza;
Omran, Rabab

Publication type:

Article

Prion Folding Sends a Death Signal in Fungus.

Published in:

PLoS Biology, 2015, v. 13, n. 2, p. 1, doi. 10.1371/journal.pbio.1002058

By:

Robinson, Richard

Publication type:

Article

Sonic Hedgehog Dependent Phosphorylation by CK1α and GRK2 Is Required for Ciliary Accumulation and Activation of Smoothened.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001083

By:

Yongbin Chen;
Noriaki Sasai;
Guoqiang Ma;
Tao Yue;
Jianhang Jia;
James Briscoe;
Jin Jiang

Publication type:

Article

BiP Binding to the ER-Stress Sensor Ire1 Tunes the Homeostatic Behavior of the Unfolded Protein Response.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000415

By:

Pincus, David;
Chevalier, Michael W.;
Aragón, Tomás;
van Anken, Eelco;
Vidal, Simon E.;
El-Samad, Hana;
Walter, Peter

Publication type:

Article

Two Distinct Mechanisms for Actin Capping Protein Regulation--Steric and Allosteric Inhibition.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000416

By:

Takeda, Shuichi;
Minakata, Shiho;
Koike, Ryotaro;
Kawahata, Ichiro;
Narita, Akihiro;
Kitazawa, Masashi;
Ota, Motonori;
Yamakuni, Tohru;
Maéda, Yuichiro;
Nitanai, Yasushi

Publication type:

Article

Charting an Unknown Protein Universe.

Published in:

PLoS Biology, 2009, v. 7, n. 9, p. 1, doi. 10.1371/journal.pbio.1000206

By:

Heller, Kira

Publication type:

Article

Exploration of Uncharted Regions of the Protein Universe.

Published in:

PLoS Biology, 2009, v. 7, n. 9, p. 1, doi. 10.1371/journal.pbio.1000205

By:

Jaroszewski, Lukasz;
Zhanwen Li;
Krishna, S. Sri;
Bakolitsa, Constantina;
Wooley, John;
Deacon, Ashley M.;
Wilson, Ian A.;
Godzik, Adam

Publication type:

Article

The Unfolding of Amyloid's True Colors.

Published in:: PLoS Biology, 2006, v. 4, n. 1, p. e8, doi. 10.1371/journal.pbio.0040008
Publication type:: Article

Polypeptide composition of major oilseed proteins and functional properties of extracted protein products: A concise review.

Published in:

Journal of the American Oil Chemists' Society (JAOCS), 2024, v. 101, n. 1, p. 23, doi. 10.1002/aocs.12740

By:

Aluko, Rotimi E.

Publication type:

Article

Protein Binding on the Surface of Magnetic Nanoparticles.

Published in:

Particle & Particle Systems Characterization, 2019, v. 36, n. 8, p. N.PAG, doi. 10.1002/ppsc.201900072

By:

Sun, Jiaojiao;
Shi, Haimei;
Mo, Tianlu;
Zhang, Yinglu;
Wang, Xudong;
Ding, Chuanfan;
Yu, Shaoning

Publication type:

Article

Tools for analyzing protonation states and for tracing proton transfer pathways with examples from the Rb. sphaeroides photosynthetic reaction centers.

Published in:

Photosynthesis Research, 2023, v. 156, n. 1, p. 101, doi. 10.1007/s11120-022-00973-0

By:

Wei, Rongmei Judy;
Khaniya, Umesh;
Mao, Junjun;
Liu, Jinchan;
Batista, Victor S.;
Gunner, M. R.

Publication type:

Article

Automatically obtaining a cellular automaton scheme for modeling protein folding using the FCC model.

Published in:

Natural Computing, 2019, v. 18, n. 2, p. 275, doi. 10.1007/s11047-018-9705-y

By:

Varela, Daniel;
Santos, José

Publication type:

Article

Preliminary studies on the renaturation of denatured catfish (<i>Clarias gariepinus</i>) glutathione transferase.

Published in:

Fish Physiology & Biochemistry, 2013, v. 39, n. 6, p. 1657, doi. 10.1007/s10695-013-9817-3

By:

Ojopagogo, Yetunde Adedolapo;
Adewale, Isaac Olusanjo;
Afolayan, Adeyinka

Publication type:

Article

Determination of Intracellular Protein Concentration Using a Bright-Field Microscope.

Published in:

Microscopy & Microanalysis, 2024, v. 30, p. 1, doi. 10.1093/mam/ozae044.394

By:

Model, Michael

Publication type:

Article

Visualizing Heterogeneous Protein Conformations with Multi-Tilt Nanoparticle-Aided Cryo-Electron Microscopy Sampling.

Published in:

Microscopy & Microanalysis, 2024, v. 30, p. 1, doi. 10.1093/mam/ozae044.390

By:

Kim, Yeeun;
Kim, Changin;
Lee, Sang Jin;
Yun, So Ri;
Choi, Jungkweon;
Kim, Seong Ok;
Yang, Yongsoo;
Ihee, Hyotcherl

Publication type:

Article

Two Different Forms of Thick Filament in the Flight Muscle of Drosophila melanogaster.

Published in:

Microscopy & Microanalysis, 2024, v. 30, p. 1, doi. 10.1093/mam/ozae044.377

By:

Rastegarpouyani, Hosna;
Hojjatian, Alimohammad;
Li, Jiawei;
Yeganeh, Fatemeh Abbasi;
Taylor, Kenneth A

Publication type:

Article

High-value compounds obtained from grape canes (Vitis vinifera L.) by steam pressure alkali extraction.

Published in:

Food & Bioproducts Processing: Transactions of the Institution of Chemical Engineers Part C, 2022, v. 133, p. 153, doi. 10.1016/j.fbp.2022.04.003

By:

Santos, Jorge;
Escobar-Avello, Danilo;
Magalhães, Pedro;
Magalhães, F. D.;
Martins, Jorge Manuel;
González-Álvarezg, Julia;
Carvalho, Luisa Horade

Publication type:

Article

Eukaryotic aggresomes: from a model of conformational diseases to an emerging type of immobilized biocatalyzers.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 2, p. 559, doi. 10.1007/s00253-015-7107-y

By:

Corchero, José

Publication type:

Article

Construction of a linker library with widely controllable flexibility for fusion protein design.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 1, p. 215, doi. 10.1007/s00253-015-6985-3

By:

Li, Gang;
Huang, Ziliang;
Zhang, Chong;
Dong, Bo-Jun;
Guo, Ruo-Hai;
Yue, Hong-Wei;
Yan, Li-Tang;
Xing, Xin-Hui

Publication type:

Article

Heat shock response improves heterologous protein secretion in Saccharomyces cerevisiae.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 8, p. 3559, doi. 10.1007/s00253-012-4596-9

By:

Hou, Jin;
Österlund, Tobias;
Liu, Zihe;
Petranovic, Dina;
Nielsen, Jens

Publication type:

Article

Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.

Published in:

Glycobiology, 2016, v. 26, n. 1, p. 19, doi. 10.1093/glycob/cwv083

By:

Sunhwan Jo;
Yifei Qi;
Wonpil Im

Publication type:

Article

Glycosylation-related gene expression profiling in the brain and spleen of scrapie-affected mouse.

Published in:

Glycobiology, 2009, v. 19, n. 8, p. 879, doi. 10.1093/glycob/cwp062

By:

Florence Guillerme-Bosselut;
Lionel Forestier;
Chantal Jayat-Vignoles;
Jean-Luc Vilotte;
Iuliana Popa;
Jacques Portoukalian;
Annick Le Dur;
Hubert Laude;
Raymond Julien;
Paul-François Gallet

Publication type:

Article

Unlocking Insights into Folding, Structure, and Function of Proteins through Circular Dichroism Spectroscopy—A Short Review.

Published in:

Applied Biosciences, 2023, v. 2, n. 4, p. 639, doi. 10.3390/applbiosci2040040

By:

Linhares, Leonardo A.;
Ramos, Carlos H. I.

Publication type:

Article

Choice of ATP Analogues for Biophysical Studies—A Systematic NMR-Based Investigation for the AAA Enzyme p97.

Published in:

Biophysica, 2025, v. 5, n. 1, p. 9, doi. 10.3390/biophysica5010009

By:

Droemer, Maxim A.;
Shein, Mikhail;
Schütz, Anne K.

Publication type:

Article

Differential Scanning Calorimetry of Proteins and the Two-State Model: Comparison of Two Formulas.

Published in:

Biophysica, 2024, v. 4, n. 2, p. 227, doi. 10.3390/biophysica4020016

By:

Yeritsyan, Knarik;
Badasyan, Artem

Publication type:

Article

The Amyloidogenic Peptide Amyloid Beta(16–22) Displays Facet Dependent Conformation on Metal Surfaces.

Published in:

Biophysica, 2022, v. 2, n. 2, p. 135, doi. 10.3390/biophysica2020015

By:

Somers, Kieran P.;
Cheung, David L.

Publication type:

Article

A Computational Perspective into Binding Mechanism of a potent FAK Inhibitor as Anticancer Drug Candidate: Insights from Molecular Dynamics Simulations.

Published in:

Journal of Computational Biophysics & Chemistry, 2025, v. 24, n. 2, p. 239, doi. 10.1142/S2737416524500601

By:

Shogi, F.;
Gholamin, D.;
Razzaghi-Asl, N.

Publication type:

Article

Assessments of Variational Autoencoder in Protein Conformation Exploration.

Published in:

Journal of Computational Biophysics & Chemistry, 2023, v. 22, n. 4, p. 489, doi. 10.1142/S2737416523500217

By:

Xiao, Sian;
Song, Zilin;
Tian, Hao;
Tao, Peng

Publication type:

Article

Elucidation of Conformational Dynamics of MDM2 and Alterations Induced Upon Inhibitor Binding Using Elastic Network Simulations and Molecular Docking.

Published in:

Journal of Computational Biophysics & Chemistry, 2021, v. 20, n. 7, p. 751, doi. 10.1142/S2737416521500460

By:

Kantarci-Carsibasi, Nigar

Publication type:

Article

Computing Protein pKas Using the TABI Poisson–Boltzmann Solver.

Published in:

Journal of Computational Biophysics & Chemistry, 2021, v. 20, n. 2, p. 175, doi. 10.1142/S2737416520420065

By:

Chen, Jiahui;
Hu, Jingzhen;
Xu, Yongjia;
Krasny, Robert;
Geng, Weihua

Publication type:

Article

The Heat-Induced Gel–Sol Transition in Coated Tofu: A Study on Protein Conformation and Microstructural Changes.

Published in:

Gels (2310-2861), 2025, v. 11, n. 4, p. 237, doi. 10.3390/gels11040237

By:

Xie, Xin;
Li, Meng;
Diao, Xinrui;
Sun, Saihua;
Wen, Ming;
Zhou, Xiaohu;
Zhao, Liangzhong;
Li, Yang;
Lv, Ping;
Li, Bin;
Shen, Xiaolong;
Huang, Zhanrui;
Chen, Hao;
Zhang, Kuilin

Publication type:

Article

High-Quality Application of Crayfish Muscle in Surimi Gels: Fortification of Blended Gels by Transglutaminase.

Published in:

Gels (2310-2861), 2025, v. 11, n. 3, p. 204, doi. 10.3390/gels11030204

By:

Wang, Hongyi;
Li, Qiang;
Yang, Mengru;
Wang, Hong;
Wang, Mengtao;
Lin, Lin;
Lu, Jianfeng

Publication type:

Article

Stoichiometry-controlled secondary structure transition of amyloid-derived supramolecular dipeptide co-assemblies.

Published in:

Communications Chemistry, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42004-019-0170-z

By:

Ji, Wei;
Yuan, Chengqian;
Chakraborty, Priyadarshi;
Gilead, Sharon;
Yan, Xuehai;
Gazit, Ehud

Publication type:

Article

大大豆中一种富含半胱氨酸蛋白性质的分子动力学模拟.

Published in:

Journal of Jilin University (Science Edition) / Jilin Daxue Xuebao (Lixue Ban), 2022, v. 60, n. 5, p. 1202, doi. 10.13413/j.cnki.jdxblxb.2021454

By:

李洋;
王科飞;
胡海燕;
王志超;
李延春

Publication type:

Article

Monitoring Conformational Changes of Lysozyme–Polyelectrolyte Complexes Using Trapped Ion Mobility-Mass Spectrometry (IM-MS).

Published in:

Analytical Letters, 2023, v. 56, n. 8, p. 1377, doi. 10.1080/00032719.2023.2173768

By:

Atakay, Mehmet

Publication type:

Article

Potential Lubricating Mechanism of Hyaluronic Acid for a Reduction of Albumin-Mediated Friction in the Artificial Joint System.

Published in:

Lubricants (2075-4442), 2023, v. 11, n. 5, p. 210, doi. 10.3390/lubricants11050210

By:

Su, Chen-Ying;
Lu, Yi-Fang;
Lu, Yung-Chang;
Huang, Chang-Hung;
Fang, Hsu-Wei

Publication type:

Article

The Role of Conformational Entropy in the Determination of Structural-Kinetic Relationships for Helix-Coil Transitions.

Published in:

Computation, 2018, v. 6, n. 1, p. 21, doi. 10.3390/computation6010021

By:

Rudzinski, Joseph F.;
Bereau, Tristan

Publication type:

Article

Protein Oxidative Modifications in Neurodegenerative Diseases: From Advances in Detection and Modelling to Their Use as Disease Biomarkers.

Published in:

Antioxidants, 2024, v. 13, n. 6, p. 681, doi. 10.3390/antiox13060681

By:

Anjo, Sandra I.;
He, Zhicheng;
Hussain, Zohaib;
Farooq, Aruba;
McIntyre, Alan;
Laughton, Charles A.;
Carvalho, Andreia Neves;
Finelli, Mattéa J.

Publication type:

Article

MOLECULAR BASIS AND INTEGRATIVE ANALYSIS OF Rv1463 AS PROBABLE CONSERVED ATP-BINDING PROTEIN BY COMPUTATIONAL APPROACH.

Published in:

Journal of Faculty of Pharmacy of Ankara University / Ankara Üniversitesi Eczacilik Fakültesi Dergisi, 2021, v. 45, n. 2, p. 212, doi. 10.33483/jfpau.866876

By:

BEG, Md Amjad;
SEVİNDİK, Mustafa;
HAIDER, Shahid Tanweer;
SONI, Preeti;
BHATIA, Priya;
HASAN, Shahzul;
YADAV, Richa;
ATHAR, Fareeda

Publication type:

Article

Impact of protein and small molecule interactions on kinase conformations.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.94755

By:

Kugler, Valentina;
Schwaighofer, Selina;
Feichtner, Andreas;
Enzler, Florian;
Fleischmann, Jakob;
Strich, Sophie;
Schwarz, Sarah;
Wilson, Rebecca;
Tschaikner, Philipp;
Troppmair, Jakob;
Sexl, Veronika;
Meier, Pascal;
Kaserer, Teresa;
Stefan, Eduard

Publication type:

Article

Structural analysis of the dynamic ribosome-translocon complex.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.95814

By:

Lewis, Aaron J. O.;
Zhong, Frank;
Keenan, Robert J.;
Hegde, Ramanujan S.

Publication type:

Article

Structural and functional properties of the transporter SLC26A6 reveal mechanism of coupled anion exchange.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87178

By:

Tippett, David N.;
Breen, Colum;
Butler, Stephen J.;
Sawicka, Marta;
Dutzler, Raimund

Publication type:

Article

Potent Prearranged Positive Allosteric Modulators of the Glucagon-like Peptide-1 Receptor.

Published in:

ChemistryOpen, 2017, v. 6, n. 4, p. 501, doi. 10.1002/open.201700062

By:

Jones, BEN J.;
Scopelliti, Rosario;
Tomas, Alejandra;
Bloom, StephEN R.;
Hodson, David J.;
BroichhagEN, Johannes

Publication type:

Article

Mapping sites of aspirin-induced acetylations in live cells by quantitative acid-cleavable activity-based protein profiling (QA-ABPP).

Published in:

Scientific Reports, 2015, p. 7896, doi. 10.1038/srep07896

By:

Wang, Jigang;
Zhang, Chong-Jing;
Zhang, Jianbin;
He, Yingke;
Lee, Yew Mun;
Chen, Songbi;
Lim, Teck Kwang;
Ng, Shukie;
Shen, Han-Ming;
Lin, Qingsong

Publication type:

Article

Live visualizations of single isolated tubulin protein self-assembly via tunneling current: effect of electromagnetic pumping during spontaneous growth of microtubule.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep07303

By:

Sahu, Satyajit;
Ghosh, Subrata;
Daisuke Fujita;
Bandyopadhyay, Anirban

Publication type:

Article

Optically Induced Thermal Gradients for Protein Characterization in Nanolitre-scale Samples in Microfluidic Devices.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02130

By:

Sagar, D. M.;
Aoudjane, Samir;
Gaudet, Matthieu;
Aeppli, Gabriel;
Dalby, Paul A.

Publication type:

Article