Works about PHYLOGENY

Results: 5000

Phylogenomic Analyses Reveal Species Relationships and Phylogenetic Incongruence with New Member Detected in Allium Subgenus Cyathophora.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2083, doi. 10.3390/plants14132083

By:

Chen, Kun;
Tang, Zi-Jun;
Wang, Yuan;
Tan, Jin-Bo;
Zhou, Song-Dong;
He, Xing-Jin;
Xie, Deng-Feng

Publication type:

Article

Comparative Genomic Analysis of COMT Family Genes in Three Vitis Species Reveals Evolutionary Relationships and Functional Divergence.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2079, doi. 10.3390/plants14132079

By:

Liu, Yashi;
Bian, Zhiyuan;
Jiang, Shan;
Wang, Xiao;
Jiao, Lin;
Shao, Yun;
Ma, Chengmei;
Chu, Mingyu

Publication type:

Article

Dwarf Mistletoes (Arceuthobium , Viscaceae) of North America: Classification Systems, Phylogenetic Relationships, and Taxonomic Characteristics.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2051, doi. 10.3390/plants14132051

By:

Kenaley, Shawn C.;
Mathiasen, Robert L.

Publication type:

Article

Mosaic Evolution of Membrane Transporters in Galdieriales.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2043, doi. 10.3390/plants14132043

By:

Ciniglia, Claudia;
Pollio, Antonino;
Pozzuoli, Elio;
Licata, Marzia;
Nappi, Nunzia;
Davis, Seth J.;
Iovinella, Manuela

Publication type:

Article

Genome-Wide Identification and Salt Stress-Responsive Expression Analysis of the GmPLATZ Gene Family in Soybean (Glycine max L.).

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 2004, doi. 10.3390/plants14132004

By:

Wang, Mingyu;
Guan, Zheyun;
Wu, Songquan;
Zhang, Jingyong;
Lin, Chunjing;
Sun, Yanyan;
Shen, Mingzhe;
Zhang, Chunbao

Publication type:

Article

Analysis of Genetic Diversity and Core Germplasm Construction of Castanea crenata Siebold and Zucc. Using Simple Sequence Repeat Markers and Morphological Traits.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1998, doi. 10.3390/plants14131998

By:

Cui, Yanhong;
Nie, Xinghua;
Liu, Juanjuan;
Chu, Shihui;
Liu, Hanqi;
Xu, Kaiyuan;
Shao, Yi;
Wang, Zhannan;
Zheng, Ruijie;
Xing, Yu

Publication type:

Article

Genome-Wide Characterization of the ANN Gene Family in Corydalis saxicola Bunting and the Role of CsANN1 in Dehydrocavidine Biosynthesis.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1974, doi. 10.3390/plants14131974

By:

Liu, Han;
Wang, Jing;
Wen, Zhaodi;
Qin, Mei;
Lu, Ying;
Huang, Lirong;
Ou, Xialian;
Kang, Liang;
Li, Cui;
Lei, Ming;
Zhang, Zhanjiang

Publication type:

Article

Phylogenetic and Structural Insights into Melatonin Receptors in Plants: Case Study in Capsicum chinense Jacq.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1952, doi. 10.3390/plants14131952

By:

Toledo-Castiñeira, Adrian;
Valdés-Tresanco, Mario E.;
Estrada-Tapia, Georgina;
Monforte-González, Miriam;
Martínez-Estévez, Manuel;
Echevarría-Machado, Ileana

Publication type:

Article

Genome-Wide Analysis of the FNSII Gene Family and the Role of CitFNSII-1 in Flavonoid Synthesis in Citrus.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1936, doi. 10.3390/plants14131936

By:

Liu, Xinya;
Chen, Beibei;
Luo, Ling;
Zhong, Qi;
Teo, Chee How;
Huang, Shengjia

Publication type:

Article

Genome-Wide Identification and Expression Analysis of Aspartic proteases in Populus euphratica Reveals Candidates Involved in Salt Tolerance.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1930, doi. 10.3390/plants14131930

By:

He, Peiyang;
Huang, Lifan;
Cai, Hanyang

Publication type:

Article

Macrostructure of Malus Leaves and Its Taxonomic Significance.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1918, doi. 10.3390/plants14131918

By:

Fan, Yuerong;
Li, Huimin;
Ma, Jingze;
Zhou, Ting;
Fan, Junjun;
Zhang, Wangxiang

Publication type:

Article

Genome-Wide Identification of the DOG1 Gene Family in Pepper (Capsicum annuum) and Its Expression Profiles During Seed Germination.

Published in:

Plants (2223-7747), 2025, v. 14, n. 13, p. 1913, doi. 10.3390/plants14131913

By:

Zhao, Zhichao;
Sun, Jingbo;
Zhang, Feng;
Dong, Chunjuan

Publication type:

Article

Genome-Wide Identification and Analysis of the AHL Gene Family in Pepper (Capsicum annuum L.).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6527, doi. 10.3390/ijms26136527

By:

Sui, Xiao-Yan;
Li, Yan-Long;
Wang, Xi;
Zhong, Yi;
Cui, Qing-Zhi;
Luo, Yin;
Tang, Bing-Qian;
Liu, Feng;
Zou, Xue-Xiao

Publication type:

Article

Taxonomy, Phylogeny, Genomes, and Repeatomes in the Subgenera Salvia , Sclarea , and Glutinaria (Salvia , Lamiaceae).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6436, doi. 10.3390/ijms26136436

By:

Kalnyuk, Julia V.;
Yurkevich, Olga Yu.;
Badaeva, Ekaterina D.;
Semenov, Alexey R.;
Zoshchuk, Svyatoslav A.;
Amosova, Alexandra V.;
Muravenko, Olga V.

Publication type:

Article

Genome-Wide Analysis of the DNA-Binding with One Finger Gene Family Reveals Soybean Expression Pattern and Functional Analysis.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6192, doi. 10.3390/ijms26136192

By:

Gou, Chuanjie;
Zhang, Guyue;
Deng, Ziyuan;
Lin, Chenyang;
Li, Haiyang;
Liu, Huan;
Fang, Xiaomei

Publication type:

Article

Evaluation of the Mutational Preferences Throughout the Whole Genome of the Identified Variants of the SARS-CoV-2 Virus Isolates in Bangladesh.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6118, doi. 10.3390/ijms26136118

By:

Banu, Laila Anjuman;
Azmin, Nahid;
Hossain, Mahmud;
Nila, Nurun Nahar;
Sinha, Sharadindu Kanti;
Hassan, Zahid

Publication type:

Article

Comparative Analysis of Chloroplast Genomes of 19 Saxifraga Species, Mostly from the European Alps.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6015, doi. 10.3390/ijms26136015

By:

Leng, Zhenning;
Pang, Zhe;
He, Zaijun;
Gao, Qingbo

Publication type:

Article

Rare Evolutionary Events Support the Phylogenetic Placement of Orthonectida Within Annelida.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 5983, doi. 10.3390/ijms26135983

By:

Nikolaeva, Olga V.;
Mikhailov, Kirill V.;
Muntyan, Maria S.;
Zverkov, Oleg A.;
Spirin, Sergey A.;
Lyubetsky, Vassily A.;
Slyusarev, Georgy S.;
Aleoshin, Vladimir V.

Publication type:

Article

Identification of a Broad Bean Wilt Virus 2 (BBWV2) Isolate (BBWV2-SP) from Spinacia oleracea L.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 5946, doi. 10.3390/ijms26135946

By:

Zhao, Xu;
Liu, Zhiyuan;
She, Hongbing;
Xu, Zhaosheng;
Zhang, Helong;
Gao, Wujun;
Qian, Wei

Publication type:

Article

Genome-Wide Identification and Characterization of the Class III Peroxidase Gene Family in Radish (Raphanus sativus) with Insights into Their Roles in Anthocyanin Metabolism.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 5917, doi. 10.3390/ijms26135917

By:

Wei, Zihao;
Fu, Weimin;
Liu, Xianxian;
Xu, Wenling;
Chang, Lichun;
Liu, Chen;
Wang, Shufen

Publication type:

Article

Morphology and phylogeny reveal two new species and a new geographical record of Agaricus sect. Rubricosi (Agaricales) from West Bengal, India.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08102-2

By:

Tarafder, Entaj;
Karunarathna, Samantha C.;
Dutta, Arun Kumar;
Elgorban, Abdallah M.;
Tian, Feng-Hua;
Acharya, Krishnendu

Publication type:

Article

Cross-species chromosome painting offers new insights into the phylogenetic relationships among 16 representative species of Ipomoeeae.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1610698

By:

Sun, Jianying;
Chen, Lei;
Sun, Jian;
Li, Zongyun;
Han, Yonghua

Publication type:

Article

Genetic diversity of Bordetella bronchiseptica isolates obtained from primates.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1571660

By:

Nicholson, Tracy L.;
Shore, Sarah M.;
Wang, Yihui;
Zimmerman, Lindsey;
Merkel, Tod J.

Publication type:

Article

F.2 Single cell CRISPR/Cas-9 lineage tracing reveals fitness axis in glioblastoma.

Published in:

2025

By:

Ajisebutu, A;
Fan, F;
Gui, C;
Ellenbogen, Y;
Landry, A;
Wei, Q;
Patil, V;
Liu, J;
Nassiri, F;
Zadeh, G

Publication type:

Abstract

Allometric Constraint Predominates Over the Acoustic Adaptation Hypothesis in a Radiation of Neotropical Treefrogs.

Published in:

Integrative Zoology, 2025, v. 20, n. 4, p. 763, doi. 10.1111/1749-4877.12920

By:

Escalona, Moisés;
Simões, Pedro Ivo;
Gonzalez‐Voyer, Alejandro;
Mendoza‐Henao, Angela M.;
Mello Bezerra, Andressa De;
Pinheiro, Paulo D. P.;
Morales, Belén;
Guayasamin, Juan M.;
Carvalho, Thiago;
Chaparro, Juan C.;
De la Riva, Ignacio;
Rojas‐Runjaic, Fernando J. M.;
Rivera‐Correa, Mauricio;
Kok, Philippe J. R.;
Peloso, Pedro;
Nakamura, Daniel Yudi Miyahara;
Maneyro, Raúl;
Castroviejo‐Fisher, Santiago

Publication type:

Article

Digital removal of dermal denticle layer using geometric AI from 3D CT scans of shark craniofacial structures enhances anatomical precision.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-04442-1

By:

Kim, Sang Wha;
Yuen, Adams Hei Long;
Kim, Hyun Woo;
Lee, Seyoung;
Lee, Sung Bin;
Lee, Young Min;
Jung, Won Joon;
Poon, Cherry Tsz Ching;
Park, Dasol;
Kim, Sangyun;
Kim, Sang Guen;
Kang, Jung Woo;
Kwon, Jun;
Jo, Su Jin;
Giri, Sib Sankar;
Park, Hyunjung;
Seo, Jong-pil;
Kim, Deok-Soo;
Kim, Byung Yeop;
Park, Se Chang

Publication type:

Article

Cartilaginous fish and mammalian connectin evolved independently from an ancestral bony fish-like structure.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10916-z

By:

Hanashima, Akira;
Ujihara, Yoshihiro;
Kimoto, Misaki;
Ohira, Momoko;
Usui, Yuu;
Hashimoto, Ken;
Mohri, Satoshi

Publication type:

Article

First detection of Sindbis virus in wild birds in Nigeria.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10556-3

By:

Matthew, Dickson Anoibi;
Karlsson, Edvin;
Izang, Jonathan Ajik;
Isberg, Linn;
Näslund, Jonas;
Sjödin, Andreas;
Ottosson, Ulf;
Lwande, Olivia Wesula;
Waldenström, Jonas

Publication type:

Article

Global identification and characterization of soybean TPR genes with expression analysis under photoperiod variations.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10368-5

By:

Yu, Song;
Ren, Wenwen;
Song, Chengyang;
Wang, Yuxuan;
Fang, Yisheng;
Huang, Can;
Liu, Xiulin;
Zhang, Yifei;
Luo, Xiao

Publication type:

Article

Quantifying the intra- and inter-species community interactions in microbiomes by dynamic covariance mapping.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61368-y

By:

Gencel, Melis;
Cofino, Gisela Marrero;
Hui, Cang;
Sahaf, Zahra;
Gauthier, Louis;
Matta, Chloé;
Gagné-Leroux, David;
Tsang, Derek K. L.;
Philpott, Dana P.;
Ramathan, Sheela;
Menendez, Alfredo;
Bershtein, Shimon;
Serohijos, Adrian W. R.

Publication type:

Article

A new species of Cryptotis (Eulipotyphla: Soricidae) and introduction to the systematics of the Ecuadorian and Peruvian Cryptotis species.

Published in:

Mammalia: International Journal of the Systematics, Biology & Ecology of Mammals, 2025, v. 89, n. 4, p. 400, doi. 10.1515/mammalia-2024-0154

By:

Cárdenas, Pablo Moreno;
Pacheco, Víctor;
Ruelas, Dennisse;
Ron, Santiago

Publication type:

Article

Chromosome-level genome assembly of Nothapodytes nimmoniana.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05484-w

By:

Wang, Jiahui;
Ma, Xiaojie;
Yang, Xingyu;
Yang, Danni;
Huang, Tianping;
Yang, Yunqiang;
Yang, Yongping

Publication type:

Article

Characterisation and Genomic Diversity of Xanthomonas Species Causing Bacterial Spot Disease of Tomato and Pepper in Thailand.

Published in:

Plant Pathology, 2025, v. 74, n. 5, p. 1315, doi. 10.1111/ppa.14094

By:

Preangtong, Yenrudee;
Patarapuwadol, Sujin;
Phiriyangkul, Pharima;
Kanhayart, Tippawan;
Kositcharoenkul, Nuttima;
Kositratana, Wichai;
Watcharachaiyakup, Jutatape

Publication type:

Article

PubPlant – a continuously updated online resource for sequenced and published plant genomes.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1603547

By:

Schwacke, Rainer;
Bolger, Marie E.;
Usadel, Björn

Publication type:

Article

De novo assembly and comparative analysis of the first complete mitogenome in Distylium (Distylium racemosum).

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1586341

By:

Wang, Yaling;
Zhang, Zhongxiao;
Chen, Xinru;
Li, Honghe;
Ma, Chi;
Guo, Penghui

Publication type:

Article

New insights into the first cervical vertebrae of Otavipithecus and Nacholapithecus.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-09006-x

By:

Beaudet, Amélie;
Kikuchi, Yasuhiro;
Manthi, Fredrick Kyalo;
Ndiema, Emmanuel;
Stratford, Dominic;
Zipfel, Bernhard

Publication type:

Article

Detection and genetic diversity of Neoehrlichia mikurensis in rodents from central and southern Shanxi, China.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-08288-5

By:

Cheng, Hongbing;
Niu, Jingrong;
Liu, Yiping;
Ren, Fei;
Zhao, Chao;
Cui, Jia;
Bai, Yuzan;
Chen, Yunxia;
Yu, Juan;
Rao, Huaxiang

Publication type:

Article

Diving into Diversity: Haslea berepwari (Bacillariophyceae, Naviculaceae), a new species of marine diatom from New Caledonia.

Published in:

PhytoKeys, 2025, n. 255, p. 215, doi. 10.3897/phytokeys.255.144697

By:

Prasetiya, Fiddy Semba;
Jauffrais, Thierry;
Mohamed-Benkada, Mustapha;
Callac, Nolwenn;
Ansquer, Dominique;
Yılmaz, Elif;
Lemieux, Claude;
Turmel, Monique;
Mouget, Jean-Luc;
Prabowo, Danang Ambar;
Purbani, Debora Christin;
Noerdjito, Diah Radini;
Fahmi, Varian;
Arsad, Sulastri;
Gastineau, Romain

Publication type:

Article

Morphological and molecular evidence suggests that Indosasa gigantea and Acidosasa glauca (Poaceae, Bambusoideae, Arundinarieae) are conspecific.

Published in:

PhytoKeys, 2025, n. 255, p. 171, doi. 10.3897/phytokeys.255.143020

By:

Niu, Zhengyang;
Cai, Zhuoyu;
Yin, Jun;
Tong, Yihua;
Xia, Nianhe

Publication type:

Article

Cardamine tangutorum O.E.Schulz (Brassicaceae), a new synonym of Cardamine macrophylla Willd.

Published in:

PhytoKeys, 2025, n. 255, p. 123, doi. 10.3897/phytokeys.255.146179

By:

Li, Jia-lu;
He, Yi;
Liu, Quan-ru

Publication type:

Article

Sinocrassula obliquifolia (Crassulaceae), a new species from China.

Published in:

PhytoKeys, 2025, n. 255, p. 103, doi. 10.3897/phytokeys.255.142079

By:

Li, Rong-Juan;
Zhao, Jing;
Fang, Shao-Li;
Huang, Chuan-Jie;
Luo, Miao;
He, Zhao-Rong;
Zhou, Xin-Mao;
Wang, Jia-Guan

Publication type:

Article

Sinosasa damingshanensis (Poaceae, Bambusoideae), a new combination supported by morphological and molecular evidence.

Published in:

PhytoKeys, 2025, n. 255, p. 41, doi. 10.3897/phytokeys.255.148471

By:

Zhang, Yi-Ting;
Lin, Shu-Yan;
Niu, Zheng-Yang;
Jiang, Wei-Xin;
Xia, Nian-He;
Ding, Yu-Long

Publication type:

Article

Unenlagiid Affinities for Imperobator antarcticus (Paraves: Theropoda): Paleobiogeographical Implications.

Published in:

Ameghiniana, 2025, v. 62, n. 1, p. 69, doi. 10.5710/AMGH.13.11.2024.3604

By:

Motta, Matías J.;
Agnolín, Federico L.;
Egli, Federico Brissón;
Novas, Fernando E.

Publication type:

Article

An Elasmosaurid Plesiosaur with Preserved Skull Material from the Upper Cretaceous Cape Lamb Member of the Snow Hill Island Formation, Vega Island, Antarctic Peninsula.

Published in:

Ameghiniana, 2025, v. 62, n. 1, p. 80, doi. 10.5710/AMGH.17.12.2024.3619

By:

O'Gorman, José P.;
O'Connor, Patrick M.;
Roberts, Eric M.;
Lamanna, Matthew C.

Publication type:

Article

Draft genome sequences of three filamentous cyanobacteria isolated from brackish habitats.

Published in:

Journal of Genomics, 2021, v. 9, p. 20, doi. 10.7150/jgen.53678

By:

Boden, Joanne Sarah;
Grego, Michele;
Bolhuis, Henk;
Sánchez-Baracaldo, Patricia

Publication type:

Article

Distinct adaptation and epidemiological success of different genotypes within Salmonella enterica serovar Dublin.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.102253

By:

Sia, Cheryll M.;
Ambrose, Rebecca L.;
Valcanis, Mary;
Andersson, Patiyan;
Ballard, Susan A.;
Howden, Benjamin P.;
Williamson, Deborah A.;
Pearson, Jaclyn S.;
Ingle, Danielle J.

Publication type:

Article

Chromosome-level genome assembly and annotation of Spinibarbus caldwelli.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05469-9

By:

Fan, Ziyan;
Lei, Wen;
Fang, Yuan;
Sheng, Junqing;
Zeng, Qingxiang;
Jian, Shaoqing;
Fang, Lei;
Hong, Yijiang;
Zhang, Wanchang

Publication type:

Article

多基因联用技术在虫草研究中应用进展.

Published in:

Acta Edulis Fungi, 2025, v. 32, n. 2, p. 104, doi. 10.16488/j.cnki.1005-9873.2025.02.011

By:

朱新燕;
鲍素敏;
李春如;
李增智

Publication type:

Article

Complete chloroplast genome of two Brachycorythis (Orchidaceae) species from China: comparative analysis and phylogenetic implications.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11791-8

By:

Ma, Dong;
Tao, Kaifeng;
Xia, Yanqiong;
Luo, Yan;
Li, Lu

Publication type:

Article

The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02276-x

By:

Papadopoulos, Nikolaos;
Kulkarni, Siddharth S.;
Baranyi, Christian;
Fromm, Bastian;
Setton, Emily V. W.;
Sharma, Prashant P.;
Wanninger, Andreas;
Brenneis, Georg

Publication type:

Article