Works about GENOMES

Results: 5000

Genomic characterization of repetitive DNA and transposable elements in Dyckia (Pitcairnioideae) species.

Published in:

BMC Research Notes, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13104-025-07359-0

By:

Silva Rabelo-Araujo, João Victor da;
Francisconi, Ana Flávia;
da Costa, Zirlane Portugal;
Garcia, Caroline Bertocco;
de Castro Ribeiro, Otavio Batista;
Anastacio, Ana Cristina Silva Amoroso;
Zucchi, Maria Imaculada

Publication type:

Article

Mitotic genome folding.

Published in:

Journal of Cell Biology, 2025, v. 224, n. 7, p. 1, doi. 10.1083/jcb.202504075

By:

Tatsuya Hirano

Publication type:

Article

Comparative analysis of mitochondrial and chloroplast genomes of Dracaena cambodiana from contrasting island habitats.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1620721

By:

Liang, Heng;
Sun, Xiuxiu;
Qi, Huasha;
Chen, Jiali;
Wang, Yidan;
Wang, Chunmei;
Liu, Moyang;
Xia, Tengfei;
Feng, Shiling;
Chen, Cheng;
Zheng, Daojun

Publication type:

Article

Mitochondrial genome of eight Carangidae and phylogenetic analysis in the family.

Published in:

PLoS ONE, 2025, v. 19, n. 7, p. 1, doi. 10.1371/journal.pone.0326619

By:

Zhao, Fangcao;
Xian, Lin;
Zhu, Kecheng;
Zhang, Nan;
Guo, Huayang;
Liu, Baosuo;
Yang, Jingwen;
Liu, Bo;
Zhang, Dianchang

Publication type:

Article

APAV: An advanced pangenome analysis and visualization toolkit.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pcbi.1013288

By:

Dong, Xiaorui;
Jiao, Du;
Xue, Hongzhang;
Fan, Shiyu;
Wei, Chaochun

Publication type:

Article

DRYOPTERIS AFFINIS -- AN UPDATED SYNOPSIS: RANKING, HIERARCHY, TAXONOMY AND REDUCING CONFUSION.

Published in:

Fern Gazette, 2025, v. 22, n. 5, p. 208

By:

FRASER-JENKINS, C. R.

Publication type:

Article

Correction to: Coding genomes with gapped pattern graph convolutional network Open Access.

Published in:: Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf336
Publication type:: Article

Mapler: a pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf334

By:

Maurice, Nicolas;
Lemaitre, Claire;
Vicedomini, Riccardo;
Frioux, Clémence

Publication type:

Article

HAP-SAMPLE2: data-based resampling for association studies with admixture Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf333

By:

Sun, George;
Ting, Bryan W;
Wright, Fred A;
Zhou, Yi-Hui

Publication type:

Article

SVbyEye: a visual tool to characterize structural variation among whole-genome assemblies Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf332

By:

Porubsky, David;
Guitart, Xavi;
Yoo, DongAhn;
Dishuck, Philip C;
Harvey, William T;
Eichler, Evan E

Publication type:

Article

HSDSnake: a user-friendly SnakeMake pipeline for analysis of duplicate genes in eukaryotic genomes Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf325

By:

Zhang, Xi;
Hu, Yining;
Smith, David Roy;
Cheng, Zhenyu;
Archibald, John M

Publication type:

Article

GCfix: a fast and accurate fragment length-specific method for correcting GC bias in cell-free DNA Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf293

By:

Rahman, Chowdhury Rafeed;
Poh, Zhong Wee;
Skanderup, Anders Jacobsen;
Wong, Limsoon

Publication type:

Article

Bayesian estimation of allele-specific expression in the presence of phasing uncertainty Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf283

By:

Zou, Xue;
Gomez, Zachary W;
Reddy, Timothy E;
Allen, Andrew S;
Majoros, William H

Publication type:

Article

Beacon Reconstruction Attack: Reconstruction of genomes in genomic data-sharing beacons using summary statistics Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf273

By:

Saleem, Kousar;
Cicek, A Ercument;
Sav, Sinem

Publication type:

Article

Diving into Diversity: Haslea berepwari (Bacillariophyceae, Naviculaceae), a new species of marine diatom from New Caledonia.

Published in:

PhytoKeys, 2025, n. 255, p. 215, doi. 10.3897/phytokeys.255.144697

By:

Prasetiya, Fiddy Semba;
Jauffrais, Thierry;
Mohamed-Benkada, Mustapha;
Callac, Nolwenn;
Ansquer, Dominique;
Yılmaz, Elif;
Lemieux, Claude;
Turmel, Monique;
Mouget, Jean-Luc;
Prabowo, Danang Ambar;
Purbani, Debora Christin;
Noerdjito, Diah Radini;
Fahmi, Varian;
Arsad, Sulastri;
Gastineau, Romain

Publication type:

Article

Morphological and molecular evidence suggests that Indosasa gigantea and Acidosasa glauca (Poaceae, Bambusoideae, Arundinarieae) are conspecific.

Published in:

PhytoKeys, 2025, n. 255, p. 171, doi. 10.3897/phytokeys.255.143020

By:

Niu, Zhengyang;
Cai, Zhuoyu;
Yin, Jun;
Tong, Yihua;
Xia, Nianhe

Publication type:

Article

Chromosome-level genome assembly of Ceroplastes pseudoceriferus Green, 1935 (Hemiptera: Coccidae).

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05477-9

By:

Qin, Yaoguang;
Wang, Zhennan;
Li, Jiangni

Publication type:

Article

Mapping HIV-1 RNA structure, homodimers, long-range interactions and persistent domains by HiCapR.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.102550

By:

Yan Zhang;
Jingwan Han;
Xie Dejian;
Wenlong Shen;
Ping Li;
Jian You Lau;
Jingyun Li;
Lin Li;
Grzegorz Kudla;
Zhihu Zhao

Publication type:

Article

High-quality chromosome-level genome of three Meretrix species using Nanopore and Hi-C technologies.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05454-2

By:

Chen, Che-Chun;
Hsu, Te-Hua;
Lu, Hsin-Yun;
Tang, Sen-Lin;
Ho, Ying-Ning

Publication type:

Article

Chromosome-level genome assembly and annotation of Spinibarbus caldwelli.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05469-9

By:

Fan, Ziyan;
Lei, Wen;
Fang, Yuan;
Sheng, Junqing;
Zeng, Qingxiang;
Jian, Shaoqing;
Fang, Lei;
Hong, Yijiang;
Zhang, Wanchang

Publication type:

Article

Super-large record-breaking mitochondrial genome of Cathaya argyrophylla in Pinaceae.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1556332

By:

Huang, Kerui;
Xu, Wenbo;
Hu, Haoliang;
Jiang, Xiaolong;
Sun, Lei;
Zhao, Wenyan;
Long, Binbin;
Fan, Shaogang;
Zhou, Zhibo;
Mo, Ping;
Jiang, Xiaocheng;
Tian, Jianhong;
Deng, Aihua;
Xie, Peng;
Wang, Yun

Publication type:

Article

刺芹侧耳苯丙氨酸解氨酶基因表达和酶活性与菌盖颜色相关性.

Published in:

Acta Edulis Fungi, 2025, v. 32, n. 3, p. 28, doi. 10.16488/j.cnki.1005-9873.2025.03.003

By:

聂梦涵;
陈莉莉;
罗莉媛;
张拓;
谢宝贵

Publication type:

Article

Complete chloroplast genome of two Brachycorythis (Orchidaceae) species from China: comparative analysis and phylogenetic implications.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11791-8

By:

Ma, Dong;
Tao, Kaifeng;
Xia, Yanqiong;
Luo, Yan;
Li, Lu

Publication type:

Article

Genetic prediction of lower limb isometric strength changes after 12 weeks of resistance training.

Published in:

Biology of Sport, 2025, v. 42, n. 3, p. 3, doi. 10.5114/biolsport.2025.145918

By:

Mei, Tao;
Li, Yanchun;
Bao, Dapeng;
Yang, Xiangang;
Yang, Xiaolin;
Li, Liang;
He, Zihong

Publication type:

Article

Author Correction: Base-excision repair pathway shapes 5-methylcytosine deamination signatures in pan-cancer genomes.

Published in:

2025

By:

Silveira, André Bortolini;
Houy, Alexandre;
Ganier, Olivier;
Özemek, Begüm;
Vanhuele, Sandra;
Vincent-Salomon, Anne;
Cassoux, Nathalie;
Mariani, Pascale;
Pierron, Gaelle;
Leyvraz, Serge;
Rieke, Damian;
Picca, Alberto;
Bielle, Franck;
Yaspo, Marie-Laure;
Rodrigues, Manuel;
Stern, Marc-Henri

Publication type:

Correction Notice

Tracking international and regional dissemination of the KPC/NDM co-producing Klebsiella pneumoniae.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60765-7

By:

Zhang, Feilong;
Liu, Xinmeng;
Li, Ziyao;
Li, Zhihua;
Lei, Zichen;
Fan, Yanyan;
Yang, Xinrui;
Liu, Qi;
Ma, Yiqun;
Lu, Binghuai

Publication type:

Article

Selfish mutations promote age-associated erosion of mtDNA integrity in mammals.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60477-y

By:

Korotkevich, Ekaterina;
Conrad, Daniel N.;
Gartner, Zev J.;
O'Farrell, Patrick H.

Publication type:

Article

Genetic association of intelligence with longevity in Drosophila melanogaster.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0325154

By:

Khan, Mousumee;
Lkhagva, Enkhchimeg;
Kim, Hae-mi;
Zhai, Chongkai;
Siddiqui, Sharif Hasan;
Hong, Seong-Tshool

Publication type:

Article

Cooperative resistance varies among β-lactamases in E. coli, with some enabling cross-protection and sustained extracellular activity.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08392-2

By:

Wang, Qinqin;
Wei, Shaodong;
Madsen, Jonas Stenløkke

Publication type:

Article

Binding Affinity in Theoretical SARS-CoV-2 S Protein Variants.

Published in:

International Journal of High School Research, 2025, v. 7, n. 6, p. 6, doi. 10.36838/v7i6.6

By:

Puentes, Daniela Muraira

Publication type:

Article

A Method of Well-Spread Pachytene Chromosome Preparations for Plant Species with Large Genomes Suitable for the Immunolocalization of Meiotic Proteins.

Published in:

Methods & Protocols, 2025, v. 8, n. 3, p. 54, doi. 10.3390/mps8030054

By:

Kudryavtseva, Natalya;
Ermolaev, Aleksey;
Khrustaleva, Ludmila

Publication type:

Article

Characterization and phylogenetic analysis of the complete chloroplast genome of Cordia subcordata Lamarck 1899, a protected plant in China.

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 631, doi. 10.1080/23802359.2025.2519220

By:

Liu, Mingzhong;
Zhang, Hui;
Tang, Wen;
Gao, Zhenyang;
Zhao, Muqiu;
Shi, Yunfeng

Publication type:

Article

The complete chloroplast genome sequence of Brachybotrys paridiformis Maxim. ex Oliv. (Boraginaceae), a species from a monotypic genus in Northeast China.

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 641, doi. 10.1080/23802359.2025.2519218

By:

Liu, Yang;
Dong, Hao;
Li, Linghong;
Ding, Siyu;
Zang, Zhi;
Lu, Xi

Publication type:

Article

The complete chloroplast genome sequence of Paris nitida G.W.Hu, Z.Wang & Q.F.Wang 2017 (Melanthiaceae), an endemic herb in China.

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 579, doi. 10.1080/23802359.2025.2519214

By:

Wang, Jinghan;
Cao, Jiwu;
Liang, Junsheng;
Guo, Wei

Publication type:

Article

Novel complete mitochondrial genomes of eight riverine Lamprologus species (Actinopterygii, Cichlidae) suggest in-situ speciation of the blind cichlid L. lethops in the lower Congo River.

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 595, doi. 10.1080/23802359.2025.2519212

By:

Jimenez, Sebastian M.;
Kurata, Naoko P.;
Stiassny, Melanie L. J.;
Alter, S. Elizabeth;
Chakrabarty, Prosanta;
Alda, Fernando

Publication type:

Article

The complete mitochondrial genome sequences of Phlebopus portentosus and Leccinum extremiorientale (Boletales; Boletinellaceae: Phlebopus; Leccinum).

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 606, doi. 10.1080/23802359.2025.2519211

By:

Huang, Yun;
Zhang, Fen;
Gao, Li-Zhi

Publication type:

Article

The complete chloroplast genome sequence of Syringa meyeri (Oleaceae).

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 543, doi. 10.1080/23802359.2025.2512866

By:

Cheng, Shaoying;
Li, Jingrui;
Cui, Hongxia;
Li, Yuanyuan;
Liu, Zhonghua

Publication type:

Article

The first two complete mitochondrial genomes of Butyriboletus roseoflavus (Hai B. Li & Hai L. Wei) D. Arora & J.L. Frank 2014 (Boletales: Boletaceae) and phylogenetic analysis.

Published in:

Mitochondrial DNA: Resources, 2025, v. 10, n. 7, p. 646, doi. 10.1080/23802359.2025.2511153

By:

Zhao, Qiming;
Song, Ling;
Lv, Xiangqian;
Luo, Fucong;
Lu, Juan;
Shao, Xuebin;
Zhang, Liping;
Li, Qiang;
Gui, Mingying;
Liu, Honggao

Publication type:

Article

CRISPRware: a software package for contextual gRNA library design.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11775-8

By:

Malekos, Eric;
Montano, Christy;
Carpenter, Susan

Publication type:

Article

2024 taxonomy update for the family Retroviridae.

Published in:

Archives of Virology, 2025, v. 170, n. 8, p. 1, doi. 10.1007/s00705-025-06353-y

By:

Mayer, Jens;
Blanco-Melo, Daniel;
Coffin, John M.;
Gifford, Robert J.;
Johnson, Welkin E.;
Lindemann, Dirk;
Peeters, Martine;
Sato, Kei;
Stoye, Jonathan;
Tachedjian, Gilda;
Hatziioannou, Theodora

Publication type:

Article

Screening of Premature Ovarian Insufficiency-Associated Genes in Turkish Patients.

Published in:

Namık Kemal Tıp Dergisi, 2025, v. 13, n. 2, p. 1, doi. 10.4274/nkmj.galenos.2025.83435

By:

ATLI, Emine İkbal;
GÜRKAN, Hakan;
YALÇINTEPE, Sinem;
DEMİR, Selma;
GÜLER, Hazal SEZGİNER;
ZHURİ, Drenushe;
ATLI, Engin;
ELTER, Koray;
ATEŞ, Sinan

Publication type:

Article

High Gene Expression Predicts Extremely Low Segregation of Deleterious Mutations in Large Penguin Populations Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf146

By:

Trucchi, Emiliano;
Massa, Piergiorgio;
Giannelli, Francesco;
Latrille, Thibault;
Gargano, Marco;
Fernandes, Flavia A Nitta;
Ancona, Lorena;
Stenseth, Nils Chr;
Obiol, Joan Ferrer;
Paris, Josephine;
Bertorelle, Giorgio;
Bohec, Céline Le

Publication type:

Article

Genetic Formation of Neolithic Hongshan People and Demic Expansion of Hongshan Culture Inferred From Ancient Human Genomes Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf139

By:

Wang, Rui;
Zhu, Lihuan;
Ma, Hao;
Song, Meiling;
Ma, Guanju;
Wang, Baitong;
Fu, Lihong;
Hao, Jiaojiao;
Fu, Guangping;
Wang, Junyan;
Wang, Qian;
Zhu, Kongyang;
Yang, Xiaomin;
Xu, Yu;
Tao, Le;
He, Haifeng;
Li, Shujin;
Jiang, Jianming;
Zhang, Wenrui;
Wang, Chuan-Chao

Publication type:

Article

HGTs are not SPRs: In the Presence of Ghost Lineages, Series of Horizontal Gene Transfers do not Result in Series of Subtree Pruning and Regrafting Open Access.

Published in:

2025

By:

Tannier, Eric;
Tricou, Théo;
Benali, Syrine;
Vienne, Damien M de

Publication type:

Correction Notice

Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf126

By:

Martin, Galen T;
Fiscus, Christopher J;
Gaut, Brandon S

Publication type:

Article

Conditional QTL Analysis and Fine Mapping for Thousand-Kernel Weight in Common Wheat.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1848, doi. 10.3390/plants14121848

By:

Guo, Haoru;
Liu, Wei;
Yan, Geling;
Dong, Yifan;
Guan, Chongshuo;
Zhang, Zhiyan;
Zhao, Changhao;
Xia, Linxuan;
Zhu, Da;
Zhao, Chunhua;
Sun, Han;
Wu, Yongzhen;
Wu, Jianguo;
Qin, Ran;
Cui, Fa

Publication type:

Article

The Molecular Breeding of Different Ecotype Japonica Varieties Resistant to Rice Blast with High Genome Collinearity.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1836, doi. 10.3390/plants14121836

By:

Zeng, Shengyuan;
Du, Cancan;
Yang, Yihao;
Hu, Qingfeng;
Li, Chuang;
Feng, Fang;
Guo, Min;
Jing, Dedao;
Lin, Tianzi;
Gong, Hongbing;
Yan, Changjie

Publication type:

Article

Entomo-Virological Surveillance and Genomic Insights into DENV-2 Genotype III Circulation in Rural Esmeraldas, Ecuador.

Published in:

Pathogens, 2025, v. 14, n. 6, p. 541, doi. 10.3390/pathogens14060541

By:

Carrazco-Montalvo, Andrés;
Gutiérrez-Pallo, Diana;
Arévalo, Valentina;
Ponce, Patricio;
Rodríguez-Polit, Cristina;
Echeverría-Garcés, Gabriela;
Coloma, Josefina;
Nipaz, Victoria;
Cevallos, Varsovia

Publication type:

Article

The Requirement of Turkey Herpesvirus (HVT) Glycoprotein C During Natural Infection in Chickens and Turkeys.

Published in:

Pathogens, 2025, v. 14, n. 6, p. 538, doi. 10.3390/pathogens14060538

By:

Xu, Huai;
Vega-Rodriguez, Widaliz;
Van Etten, Kathrine;
Jarosinski, Keith

Publication type:

Article

Impact of Phylogenetic Method Choice on Indel Analyses in HIV-1 Subtype B Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 6, p. 1, doi. 10.1093/gbe/evaf119

By:

Seppey, Mickaël;
Iglhaut, Clara;
Gil, Manuel;
Anisimova, Maria

Publication type:

Article