Works about GENETIC regulation

Results: 5000

Supergene regulation of ant social organization: a P haplotype in workers shifts colony ontogeny towards multiple queens.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08438-5

By:

De Gasperin, Ornela;
Blacher, Pierre;
Choppin, Marina;
Chapuisat, Michel

Publication type:

Article

Comprehensive resource for transcription readthrough events in healthy human tissues.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05557-w

By:

Mei, Yang;
Cheng, Ziqi;
Lu, Yueqi;
Wu, Shiyi;
Chen, Xi

Publication type:

Article

Revealing the significance of tissue-resident memory T cells in lung adenocarcinoma through bioinformatic analysis and experimental validation.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1600863

By:

Li, Zhuoqi;
Tian, Mei;
Yang, Yuanhui;
Wang, Yuanyuan;
Zhang, Lu;
Huang, Fujing;
Wen, Xiao;
Yin, Xiaoshu;
Lin, Xiaoyan;
Tian, Yuan

Publication type:

Article

LncRNA PVT1 Facilitates Phenotypic Switching of Vascular Smooth Muscle Cells in Intracranial Aneurysms by Recruiting KDM1A to Reduce H3K9me2 Modification.

Published in:

Kaohsiung Journal of Medical Sciences, 2025, v. 41, n. 7, p. 1, doi. 10.1002/kjm2.70025

By:

Cheng, Yu‐Fei;
Sun, Wei;
Wang, Yi‐Xia;
Chen, Jia‐Jie;
Cao, Ya‐Sen

Publication type:

Article

Plasma epigenomic profiling reveals treatment-emergent squamous transformation in prostate cancer.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-01031-3

By:

Semaan, Karl;
Nawfal, Rashad;
Canniff, John;
Savignano, Hunter;
Seo, Ji-Heui;
Siegmund, Stephanie E.;
Wu, Sarah J.;
Rotow, Julia K.;
Lee, Gwo-Shu Mary;
El Hajj Chehade, Razane;
Zhang, Ze;
Gulati, Gunsagar S.;
Phillips, Noa;
Lee, Garyoung Gary;
French, Christopher A.;
Hirsch, Michelle S.;
Jacene, Heather A.;
Choudhury, Atish D.;
Choueiri, Toni K.;
Freedman, Matthew L.

Publication type:

Article

Valproate independently activates Snf1, inhibits TORC1, and induces repression of INO1 transcription by increasing nuclear localization of Opi1.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-07540-2

By:

Case, Kendall C.;
Orkun, Lara;
Greenberg, Miriam L.

Publication type:

Article

Integrative analysis of crotonylation-associated genes reveals prognostic and therapeutic targets in gliomas.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1573997

By:

Yin, Bowen;
Fan, Zhuoyang;
Yu, Panpan;
Li, Jin;
Wang, Yilin;
Shu, Minfeng

Publication type:

Article

Genome-wide identification and expression analysis of the HvGATA gene family under abiotic stresses in barley (Hordeum vulgare L.).

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11834-0

By:

Zhao, Yan;
Yin, Chengxin;
Xing, Ruixi;
Zeng, Jianbin;
Dai, Xuehuan;
Xu, Dengan;
Liu, Wenxing;
Ma, Wujun

Publication type:

Article

Mechanism of Myh3 gene regulation of intramuscular fat content in Beijing black pigs via the MAPK signaling pathway.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11528-7

By:

Luo, Yunyan;
Xu, Gaoxiao;
Zhang, Chunguang;
Wen, Zuochen;
Chu, Han;
Dai, Yuxing;
Hong, Liang;
Zhang, Jianbin;
Vignon, Akpaca Samson;
Sun, Chao;
Zhang, Longchao;
Pu, Lei

Publication type:

Article

Protein sequence editing defines distinct and overlapping functions of SKN-1A/Nrf1 and SKN-1C/Nrf2.

Published in:

PLoS Genetics, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pgen.1011780

By:

Jochim, Briar;
Topalidou, Irini;
Lehrbach, Nicolas

Publication type:

Article

Chronic cerebral hypoperfusion induces venous dysfunction via EPAS1 regulation in mice.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61614-3

By:

Wazny, Vanessa Kristina;
Mahadevan, Aparna;
Nguyen, Nhi;
Wee, Hannah;
Vipin, Ashwati;
Lam, Tammy;
Tay, Kai Yi;
See, Jia-Xiang;
Sandhu, Gurveen;
Leow, Yi Jin;
D'Agostino, Giuseppe;
Graf, Martin;
Sivakumar, Aravind;
Lin, Sichen;
Phuc, Nguyen Cao Thien;
Chen, James Xiao Yuan;
Langley, Sarah R.;
Ang, Lay Teng;
Loh, Kyle M.;
Kandiah, Nagaendran

Publication type:

Article

Dishevelled-1 regulates global transcriptomic changes and associates with ETS1 transcription factor.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61551-1

By:

Martinez-Marin, Dalia;
Sharma, Monica;
van Wunnik, Jenna C.;
Sardela de Miranda, Flávia;
Boligala, Geetha Priya;
Jull, Ella C.;
Stroman, Grace C.;
Babcock, Rachel L.;
Pruitt, Kevin

Publication type:

Article

Role of the clock gene homolog aha-1 in the circadian system of Caenorhabditis elegans.

Published in:

Frontiers in Neuroscience, 2025, p. 1, doi. 10.3389/fnins.2025.1618370

By:

Lamberti, Melisa Luciana;
Silva, Francisco;
Goya, María Eugenia;
Bénard, Claire Y.;
Golombek, Diego A.;
Migliori, María Laura

Publication type:

Article

A dataset of expression profile of certain microRNAs in Caenorhabditis elegans.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05486-8

By:

Gao, Yimeng;
Bai, Yuchuan;
Hu, Shipeng;
Tao, Zhiju;
Jiang, Yiru;
Zhao, Di

Publication type:

Article

Single Cell and Transcriptomic Analysis of Regulatory Mechanisms of Key Genes in Systemic Lupus Erythematosus.

Published in:

International Journal of General Medicine, 2025, v. 18, p. 3193, doi. 10.2147/IJGM.S522871

By:

Zhou, Yali;
Wu, Yongzhuo;
Yang, Binbin;
Zhu, Qinghuan;
Long, Haojun;
Yuan, Limei;
Cao, Wenting;
Deng, Danqi

Publication type:

Article

Chlorogenic Acid Content and Metabolism-related Gene Regulation of Potato Tuber Flesh Induced by Sucrose and Phytohormones.

Published in:

Potato Research, 2025, v. 68, n. 2, p. 1281, doi. 10.1007/s11540-024-09775-4

By:

Yang, Huiqin;
Luo, Wei;
Gao, Dongli

Publication type:

Article

Integrated transcriptomic analysis unveils molecular mechanisms regulating meat quality in newly improved black goat breeds.

Published in:

NPJ Science of Food, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41538-025-00476-x

By:

Long, Yong;
Zhang, Naifeng;
Bi, Yanliang;
Ma, Tao;
Paengkoum, Pramote;
Xiao, Wen;
Zhao, Yanpin;
Yuan, Chao;
Wang, Defeng;
Yang, Yang;
Su, Chaozhi;
Han, Yong

Publication type:

Article

Light‐Driven Transcriptomic Changes in Monilinia fructigena During Early Infection of Nectarines.

Published in:

Plant Pathology, 2025, v. 74, n. 6, p. 1707, doi. 10.1111/ppa.14118

By:

Astacio, Juan Diego;
Villarino, Maria;
Veloso, Javier;
Requena, Elena;
Melgarejo, Paloma;
De Cal, Antonieta;
Espeso, Eduardo Antonio

Publication type:

Article

Hsa_circ_0018909 promotes non-small cell lung cancer by directly regulating hsa-miR-513b-5p.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1542742

By:

Liu, Qi;
Yu, Yong-Kui;
Li, Hao-Miao;
Wang, Wei;
Xu, Jing

Publication type:

Article

Molecular insights into glioblastoma progression: role of CHCHD2P9 in tumor heterogeneity and prognosis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1581850

By:

Ding, Yanyu;
Xiao, Lizhi;
Zhou, Xiaoling;
Zhao, Jiaxin;
Ke, Jianli;
Cai, Huabao;
Zhao, Mengyu;
Wang, Cunzhi;
Yu, Tianhang;
Zhao, Zhijie;
Wang, Yucai;
Ke, Jiyuan

Publication type:

Article

Host cellular transcriptional response to respiratory syncytial virus infection in HEp-2 cells: insights from cDNA microarray and quantitative PCR analyses.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1613386

By:

Pastey, Manoj K.;
Lupfer, Christopher

Publication type:

Article

Regulation of the tagatose catabolic gene cluster and development of a tagatose-inducible expression system in the probiotic Escherichia coli Nissle 1917.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02771-4

By:

Park, Keunha;
Kim, Youngshin;
Kim, Dohyeon;
Oh, Su Min;
Koo, Tae Jeong;
Yoo, Seung Min;
Yoon, Sung Ho

Publication type:

Article

Cardiac-specific overexpression of PRMT5 exacerbates pressure overload-induced hypertrophy and heart failure.

Published in:

Journal of Biomedical Science, 2025, v. 32, n. 1, p. 1, doi. 10.1186/s12929-025-01162-6

By:

Katanasaka, Yasufumi;
Sunagawa, Yoichi;
Sakurai, Ryoga;
Tojima, Mikuto;
Naruta, Ryuya;
Hojo, Yuya;
Kawase, Yuto;
Hamabe-Horiike, Toshihide;
Mori, Kiyoshi;
Hasegawa, Koji;
Morimoto, Tatsuya

Publication type:

Article

Identifying propionate metabolism-related genes as biomarkers of sepsis development and therapeutic targets.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-06463-2

By:

Yang, Lechen;
Shang, Weifeng;
Chen, Dongjie;
Qian, Hang;
Zhang, Sheng;
Pan, Xiaojun;
Huang, Sisi;
Liu, Jiao;
Chen, Dechang

Publication type:

Article

Bioinformatics analysis identifies BST1 as a potential therapeutic target linked to neutrophil extracellular traps in patients with acute liver failure.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-05792-6

By:

Tao, Mengyu;
Fu, Jiwei;
Wu, Xiaoping

Publication type:

Article

Evolution of growth factor signaling to the TSC complex to regulate mTORC1.

Published in:

Science Signaling, 2025, v. 18, n. 894, p. 1, doi. 10.1126/scisignal.adw4165

By:

Wang, Kun;
Lockwood, Sophie E.;
Manning, Brendan D.

Publication type:

Article

A Methyl‐Engineered DNAzyme for Endogenous Alkyltransferase Monitoring and Self‐Sufficient Gene Regulation.

Published in:

Small Methods, 2025, v. 9, n. 6, p. 1, doi. 10.1002/smtd.202401160

By:

He, Yuqiu;
Wang, Qing;
Zhang, Qingqing;
Wang, Yifei;
Jiang, Yuqian;
Zhao, Qiu;
Liu, Xiaoqing;
Wang, Fuan

Publication type:

Article

FGF13 prevents age-related hearing loss by protecting spiral ganglion neurons and ribbon synapses from injury.

Published in:

Cell Death Discovery, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41420-025-02607-5

By:

Yin, Huan;
Cao, Huan;
Yang, Jianwang;
Liu, Tao;
Li, Qi;
Liu, Mengxiao;
Wang, Baoshan

Publication type:

Article

Human eIF2A has a minimal role in translation initiation and in uORF-mediated translational control in HeLa cells.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.105311

By:

Roiuk, Mykola;
Neff, Marilena;
Teleman, Aurelio A.

Publication type:

Article

Passive shaping of intra- and intercellular m6A dynamics via mRNA metabolism.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.100448

By:

Dierks, David;
Shachar, Ran;
Nir, Ronit;
Garcia-Campos, Miguel Angel;
Uzonyi, Anna;
Wiener, David;
Toth, Ursula;
Rossmanith, Walter;
Lasman, Lior;
Slobodin, Boris;
Hanna, Jacob H.;
Antebi, Yaron;
Scherz-Shouval, Ruth;
Schwartz, Schraga

Publication type:

Article

A comprehensive all-in-one CRISPR toolbox for large-scale screens in plants.

Published in:

Plant Cell, 2025, v. 37, n. 4, p. 1, doi. 10.1093/plcell/koaf081

By:

Cheng, Yanhao;
Li, Gen;
Qi, Aileen;
Mandlik, Rushil;
Pan, Changtian;
Wang, Doris;
Ge, Sophia;
Qi, Yiping

Publication type:

Article

StripePy: fast and robust characterization of architectural stripes Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf351

By:

Raffo, Andrea;
Rossini, Roberto;
Paulsen, Jonas

Publication type:

Article

scNucMap: mapping the nucleosome landscapes at single-cell resolution Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf324

By:

Xiang, Qianming;
Lai, Binbin

Publication type:

Article

Methyltransferase 1-mediated tRNA N<sup>7</sup>-methylguanosine modification regulates dentin formation during tooth root development via p53 signaling.

Published in:

Journal of Bone & Mineral Research, 2025, v. 40, n. 6, p. 813, doi. 10.1093/jbmr/zjaf056

By:

Gan, Xinyan;
He, Kun;
Xiong, Qiuchan;
Sheng, Rui;
Lei, Kexin;
Jiang, Shuang;
Yang, Xiaoyu;
Cai, Yimeng;
Huang, Denghao;
Shi, Yu;
Ye, Ling;
Yuan, Quan;
Li, Qiwen

Publication type:

Article

Bcl-xL is important for the antiapoptotic activity of Gfi1 and is upregulated by Gfi1 through hemgn.

Published in:

Journal of Immunology, 2025, v. 214, n. 5, p. 1046, doi. 10.1093/jimmun/vkae066

By:

G C, Binod;
Du, Pei;
Zhang, Yangyang;
Yang, Li;
Dong, Fan

Publication type:

Article

Coding and non-coding RNA expression in NSC34 cells following TDP-43 depletion and mutant TDP-43 M337V expression.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05409-7

By:

Gbadamosi, Ismail;
Binias, Sandra;
Gielniewski, Bartłomiej;
Magno, Ramiro;
Duarte, Isabel;
Jawaid, Ali

Publication type:

Article

Small signaling peptides define leaf longevity.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1616650

By:

Qiu, Liping;
Lu, Rong;
Zhang, Ziling;
Nie, Jiaxin;
Wang, Yue;
Liu, Jianping;
Han, Huibin

Publication type:

Article

In-silico characterization and expression study of eIF genes associated with abiotic stresses in potato (Solanum tuberosum L.).

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-09429-6

By:

Kaur, Maninder;
Manchanda, Pooja;
Sharma, Sat Pal

Publication type:

Article

PI3K/AKT signaling pathway plays an important role in the pathogenesis of metabolic dysfunction-associated steatotic liver disease.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-07612-3

By:

Shao, Cuiping;
Xu, Youqing

Publication type:

Article

The biosynthetic pathway of coumarin and its genetic regulation in response to biotic and abiotic stresses.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1599591

By:

Wang, Yixue;
Guan, Tiqing;
Yue, Xianling;
Yang, Jiashuo;
Zhao, Xiaomin;
Chang, Aixia;
Yang, Changqing;
Fan, Zhenjun;
Liu, Keqiang;
Li, Yiting

Publication type:

Article

滑膜肉腫発生機構の解明を目指した構造生物学の急展開.

Published in:

Folia Pharmacologica Japonica, 2025, v. 160, n. 3, p. 167, doi. 10.1254/fpj.25013

By:

岩崎憲治;
竹中聡

Publication type:

Article

The hierarchical folding dynamics of topologically associating domains during early embryo development.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02259-y

By:

Bai, Xuemei;
Tang, Xiaohan;
Wang, Yuyang;
Yue, Shutong;
Xu, Xiang;
Hu, Pengzhen;
Xu, Jingxuan;
Li, Yaru;
Wang, Junting;
Tao, Huan;
Zheng, Yang;
Chen, Bijia;
Tian, Mengge;
Lin, Lin;
Wang, Ruiqing;
Sun, Yu;
Ren, Chao;
Bo, Xiaochen;
Li, Hao;
Chen, Hebing

Publication type:

Article

Extensive folding variability between homologous chromosomes in mammalian cells.

Published in:

Molecular Systems Biology, 2025, v. 21, n. 7, p. 735, doi. 10.1038/s44320-025-00107-3

By:

Irastorza-Azcarate, Ibai;
Kukalev, Alexander;
Kempfer, Rieke;
Thieme, Christoph J;
Mastrobuoni, Guido;
Markowski, Julia;
Loof, Gesa;
Sparks, Thomas M;
Brookes, Emily;
Natarajan, Kedar Nath;
Sauer, Stephan;
Fisher, Amanda G;
Nicodemi, Mario;
Ren, Bing;
Schwarz, Roland F;
Kempa, Stefan;
Pombo, Ana

Publication type:

Article

circFTO binding with IGF2BP2 regulates trophoblast cells proliferation, migration, and invasion while mediating m6A modification of CCAR1 mRNA in spontaneous abortion.

Published in:

BMC Molecular & Cell Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12860-025-00546-8

By:

Zhang, Yiwen;
Wu, Meiyao;
Lin, Xiaoling;
Lu, Bingfeng;
Chen, Xi;
Li, Qianhui;
Jiang, Yinan;
Li, Baixue;
Zhou, Dongmei;
Sheng, Xiujie

Publication type:

Article

Machine learning-assisted decoding of temporal transcriptional dynamics via fluorescent timer.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61279-y

By:

Irie, Nobuko;
Takeda, Naoki;
Satou, Yorifumi;
Araki, Kimi;
Ono, Masahiro

Publication type:

Article

Transcripts with high distal heritability mediate genetic effects on complex metabolic traits.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61228-9

By:

Tyler, Anna L.;
Mahoney, J. Matthew;
Keller, Mark P.;
Baker, Candice N.;
Gaca, Margaret;
Srivastava, Anuj;
Gyuricza, Isabela Gerdes;
Braun, Madeleine J.;
Rosenthal, Nadia A.;
Attie, Alan D.;
Churchill, Gary A.;
Carter, Gregory W.

Publication type:

Article

GPerturb: Gaussian process modelling of single-cell perturbation data.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61165-7

By:

Xing, Hanwen;
Yau, Christopher

Publication type:

Article

CryoEM structure of the SLFN14 endoribonuclease reveals insight into RNA binding and cleavage.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61091-8

By:

Van Riper, Justin;
Martinez-Claros, Arleth O.;
Wang, Lie;
Schneiderman, Hannah E.;
Maheshwari, Sweta;
Pillon, Monica C.

Publication type:

Article

Structure of a transcribing Pol II-DSIF-SPT6-U1 snRNP complex.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60979-9

By:

Zhang, Luojia;
Batters, Christopher;
Aibara, Shintaro;
Gordiyenko, Yuliya;
Žumer, Kristina;
Schmitzová, Jana;
Maier, Kerstin;
Cramer, Patrick;
Zhang, Suyang

Publication type:

Article

Spatial profiling of chromatin accessibility in formalin-fixed paraffin-embedded tissues.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60882-3

By:

Guo, Pengfei;
Chen, Yufan;
Mao, Liran;
Cardilla, Angelysia;
Lee, Chin Nien;
Cui, Yan;
Jin, Dengge;
Hua, Yucong;
Xu, Xiaowei;
Deng, Yanxiang

Publication type:

Article