Works matching DE "GENE expression"

Results: 5000

Epimedium Brevicornu and Curculigo orchioides inhibit osteoclast autophagy by degrading the level of miRNA-199 to regulate the mTOR signaling pathway.

Published in:

Journal of Orthopaedic Surgery & Research, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s13018-025-06043-0

By:

Shi, Mengyao;
Sun, Peng;
Chai, Fang

Publication type:

Article

Disturbed Spatial WNT Activation—A Potential Driver of the Reticularized Skin Phenotype in Systemic Sclerosis.

Published in:

Arthritis & Rheumatology, 2025, v. 77, n. 6, p. 740, doi. 10.1002/art.43094

By:

Fakhouri, Sara Chenguiti;
Zhu, Honglin;
Li, Yi‐Nan;
Ronicke, Moritz;
Rigau, Aleix Rius;
Dees, Clara;
Konstantinidis, Laura;
Schmid, Ralf;
Matei, Alexandru‐Emil;
Eckstein, Markus;
Geppert, Carol;
Ludolph, Ingo;
Kreuter, Alexander;
Sticherling, Michael;
Berking, Carola;
Horch, Raymund E.;
Schett, Georg;
Distler, Jörg H. W.;
Bergmann, Christina

Publication type:

Article

Topical Mupirocin Treatment Reduces Interferon and Myeloid Signatures in Cutaneous Lupus Erythematous Lesions Through Targeting of Staphylococcus Species.

Published in:

Arthritis & Rheumatology, 2025, v. 77, n. 6, p. 705, doi. 10.1002/art.43079

By:

Abernathy‐Close, Lisa;
Mears, Joseph;
Billi, Allison C.;
Sirobhushanam, Sirisha;
Berthier, Celine;
Lu, Annie;
Zhang, Zeran;
Hurst, Amy;
Gudjonsson, Johann E.;
Kahlenberg, J. Michelle

Publication type:

Article

Unveiling the Therapeutic Potential of Piper chaba Hunter: Computational Approaches Shed Light on Targeting Proteins in Alzheimer's Disease.

Published in:

BioMed Research International, 2025, v. 2025, p. 1, doi. 10.1155/bmri/8892801

By:

Rahi, Md. Sifat;
Rahman, Md. Shahedur;
Meem, Rima Islam;
Shimul, Md. Ebrahim Khalil;
Farnaj, Nahid;
Kabir, Md. Humaun;
Ahmed, Fee Faysal;
Parvez, Md. Anowar Khasru;
Huq, Md. Amdadul;
Kabir, Tabassum;
Harrath, Abdel Halim;
Hasan, Mahadi;
Rahman, Md. Ataur;
Siddique, Muhammad Hussnain

Publication type:

Article

The Importance of Studying Iron Deficiency Anemia Genetic Modulators.

Published in:

Indian Practitioner, 2025, v. 78, n. 6, p. 12

By:

Pandey, Sweta;
Agrawal, Sunil;
Pandey, Sanjay Kumar

Publication type:

Article

The circular RNA circANK suppresses rice resistance to bacterial blight by inhibiting microRNA398b-mediated defense.

Published in:

Plant Cell, 2025, v. 37, n. 4, p. 1, doi. 10.1093/plcell/koaf082

By:

Liu, Xiaohui;
Wang, Peihong;
Wang, Sai;
Liao, Weixue;
Ouyang, Mingyan;
Lin, Sisi;
Lin, Rongpeng;
Sarris, Panagiotis F;
Michalopoulou, Vasiliki;
Feng, Xurui;
Zhang, Zinan;
Xu, Zhengyin;
Chen, Gongyou;
Zhu, Bo

Publication type:

Article

ZmSSRP1 facilitates the progression of RNA polymerase II and is essential for kernel development in maize.

Published in:

Plant Cell, 2025, v. 37, n. 4, p. 1, doi. 10.1093/plcell/koaf071

By:

Wang, Jin-Yu;
Wang, Qi;
Peng, Ye-Xiang;
Jiang, Lu-Guang;
Lu, Zi-Zheng;
Zheng, Lei-Ming;
Li, Xiao-Han;
Liu, Juan;
Long, Jin-Cheng;
Liu, Jing-Han;
He, Yan

Publication type:

Article

A deficient CP24 allele defines variation for dynamic nonphotochemical quenching and photosystem II efficiency in maize.

Published in:

Plant Cell, 2025, v. 37, n. 4, p. 1, doi. 10.1093/plcell/koaf063

By:

Ferguson, John N;
Caproni, Leonardo;
Walter, Julia;
Shaw, Katie;
Arce-Cubas, Lucia;
Baines, Alice;
Thein, Min Soe;
Mager, Svenja;
Taylor, Georgia;
Cackett, Lee;
Mathan, Jyotirmaya;
Vath, Richard L;
Martin, Leo;
Genty, Bernard;
Pè, Mario Enrico;
Lawson, Tracy;
Dell'Acqua, Matteo;
Kromdijk, Johannes

Publication type:

Article

Genetic and transcriptome analyses of the effect of genotype-by-environment interactions on Brassica napus seed oil content.

Published in:

Plant Cell, 2025, v. 37, n. 4, p. 1, doi. 10.1093/plcell/koaf062

By:

Han, Xu;
Wu, Xiaowei;
Zhang, Yawen;
Tang, Qingqing;
Zeng, Lingju;
Liu, Yunhao;
Xiang, Yuyan;
Hou, Keqin;
Fang, Shuai;
Lei, Weixia;
Li, Haojie;
Tang, Shan;
Zhao, Hu;
Peng, Yan;
Yao, Xuan;
Guo, Tingting;
Zhang, Yuan-Ming;
Guo, Liang

Publication type:

Article

Gene spatial integration: enhancing spatial transcriptomics analysis via deep learning and batch effect mitigation Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf350

By:

Pratama, Rian;
Hilton, Jason;
Cherry, J Michael;
Song, Giltae

Publication type:

Article

DiSC: a statistical tool for fast differential expression analysis of individual-level single-cell RNA-seq data Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf327

By:

Zhang, Lujun;
Yang, Lu;
Ren, Yingxue;
Zhang, Shuwen;
Guan, Weihua;
Chen, Jun

Publication type:

Article

BiGSM: Bayesian inference of gene regulatory network via sparse modelling Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf318

By:

Qin, Hang;
Garbulowski, Mateusz;
Sonnhammer, Erik L L;
Chatterjee, Saikat

Publication type:

Article

diffGEK: differential gene expression kinetics Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf316

By:

Barile, Melania;
Chabra, Shirom;
Isobe, Tomoya;
Gottgens, Berthold

Publication type:

Article

TRENDY: gene regulatory network inference enhanced by transformer Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf314

By:

Tian, Xueying;
Patel, Yash;
Wang, Yue

Publication type:

Article

OrthologAL: a Shiny application for quality-aware humanization of non-human pre-clinical high-dimensional gene expression data Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf311

By:

Chowdary, Rishika;
Suter, Robert K;
D'Antuono, Matthew;
Gomes, Cynthia;
Stein, Joshua;
Lee, Ki-Bum;
Lee, Jae K;
Ayad, Nagi G

Publication type:

Article

Bayesian estimation of allele-specific expression in the presence of phasing uncertainty Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf283

By:

Zou, Xue;
Gomez, Zachary W;
Reddy, Timothy E;
Allen, Andrew S;
Majoros, William H

Publication type:

Article

Molecular cloning, characterization and expression analysis of cinnamate 4-hydroxylase (C4H) from Ferula pseudalliacea.

Published in:

Kuwait Journal of Science, 2025, v. 52, n. 3, p. 1, doi. 10.1016/j.kjs.2025.100407

By:

Shahidi, Pegah;
Bahramnejad, Bahman;
Vafaee, Yavar;
Dastan, Dara;
Heidari, Parviz

Publication type:

Article

Co‐expression of HSV‐1 ICP34.5 enhances the expression of gene delivered by self‐amplifying RNA and mitigates its immunogenicity.

Published in:

FEBS Open Bio, 2025, v. 15, n. 7, p. 1079, doi. 10.1002/2211-5463.70036

By:

Lu, Xuemin;
Wu, Yabin;
Zhao, Chunye;
Zheng, Jie;
Chen, Shangwu;
Wang, Yigang;
Xia, Yulong

Publication type:

Article

A Comparison Between Immunohistochemistry and mRNA Expression to Identify Human Epidermal Growth Factor Receptor 2--Low Breast Cancer.

Published in:

Archives of Pathology & Laboratory Medicine, 2025, v. 149, n. 7, p. 635, doi. 10.5858/arpa.2024-0255-OA

By:

Baez-Navarro, Ximena;
van Bockstal, Mieke R.;
van der Made, Angelique;
van Deurzen, Carolien H. M.

Publication type:

Article

Investigating a role for piRNA-associated piwi genes in overcoming host-plant resistance in the soybean aphid, Aphis glycinesOpen Access.

Published in:

Journal of Insect Science, 2025, v. 25, n. 3, p. 1, doi. 10.1093/jisesa/ieaf055

By:

Haller, Angel;
Poelstra, Jelmer W;
Pipatpongpinyo, Wirat;
Kreuter, Nathan;
Wilson, Jennifer R;
Michel, Andy

Publication type:

Article

Identification of candidate host-manipulating effector genes in Aphis gossypii (Hemiptera: Aphididae) using a combination of transcriptome, genome, and differential gene expression data Open Access.

Published in:

Journal of Insect Science, 2025, v. 25, n. 3, p. 1, doi. 10.1093/jisesa/ieaf053

By:

Zhao, Chaoyang;
Mueller, Nicholas;
Owens, Isabella;
Bansal, Raman;
Jacobson, Alana L

Publication type:

Article

Mapping of the Pepper Purple Fruit Gene and Development of Molecular Markers Based on BSA-Seq.

Published in:

Phyton (0031-9457), 2025, v. 94, n. 6, p. 1695, doi. 10.32604/phyton.2025.063349

By:

Liu, Xinxin;
Zhang, Yueyue;
Sharif, Rahat;
Mo, Weiqin;
Li, Zhenrong;
Yang, Guiling;
Song, Chao;
Ye, Ting;
Chen, Changming

Publication type:

Article

BCG induced innate immune response heterogeneity and susceptibility to pediatric tuberculosis.

Published in:

Journal of Immunology, 2025, v. 214, n. 5, p. 936, doi. 10.1093/jimmun/vkae062

By:

Anterasian, Christine;
Gela, Anele;
Mwambene, Temwa-Dango;
Shah, Javeed A;
Ivie, Josh;
Dill-McFarland, Kimberly A;
Hanekom, Willem A;
Kiritsy, Michael C;
Sassetti, Christopher M;
Musvosvi, Munyaradzi;
Hatherill, Mark;
Scriba, Thomas J;
Hawn, Thomas R

Publication type:

Article

Immunoregulatory macrophages induced by mycobacterial nonpolar lipids.

Published in:

Journal of Immunology, 2025, v. 214, n. 5, p. 1059, doi. 10.1093/jimmun/vkae058

By:

Petrilli, Jéssica Dias;
Estevão, Paulo;
De Araújo, Luana Evangelista;
Muller, Igor;
Yoshinaga, Marcos Yukio;
Ramos, Pablo Ivan Pereira;
Chaves-Filho, Adriano Britto;
Horta, Thainá;
Sorgi, Carlos Arterio;
Miyamoto, Sayuri;
Riley, Lee;
Arruda, Sérgio;
Queiroz, Adriano

Publication type:

Article

Coding and non-coding RNA expression in NSC34 cells following TDP-43 depletion and mutant TDP-43 M337V expression.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05409-7

By:

Gbadamosi, Ismail;
Binias, Sandra;
Gielniewski, Bartłomiej;
Magno, Ramiro;
Duarte, Isabel;
Jawaid, Ali

Publication type:

Article

Deciphering Genetic Associations: Insights into Common Molecular Pathways in Duchenne Muscular Dystrophy and Cerebral Palsy.

Published in:

Journal of Computational Biophysics & Chemistry, 2026, v. 25, n. 1, p. 99, doi. 10.1142/S273741652550036X

By:

Devu, R.;
Reshma, A. S.;
Philip, Tinu;
Sherin, D. R.

Publication type:

Article

Age-specific effects of synthetic cannabinoids on cognitive function and hippocampal gene expression in mice: insights from behavioral and molecular correlates.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1618929

By:

Li, Kaixi;
Chen, Yuanyuan;
Xu, Yawen;
Pang, Yuan;
Bao, Yongli;
Zhang, Simeng;
Shi, Xuesong;
Ran, Jingzhi;
Qiao, Yanling;
Xu, Yizhao;
Wang, Yiming;
Di, Bin;
Xu, Peng

Publication type:

Article

Multi-omics profiling of TGF-β isoforms and regulatory miRNAs in astrocytic tumors reveals TGF-β-3 as a prognostic biomarker.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1592685

By:

Skóra, Klaudia;
Strojny, Damian;
Sobański, Dawid;
Staszkiewicz, Rafał;
Bryś, Kamil;
Gogol, Paweł;
Bereza, Krzysztof;
Masternak, Michalina;
Grabarek, Beniamin Oskar

Publication type:

Article

Early life microbiome disbalance impacts neuroendocrine outcomes in pre-pubertal mice in a sexually dimorphic manner.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1504513

By:

Nankova, Bistra B.;
Hu, Furong;
LaGamma, Edmund F.

Publication type:

Article

Exercise-related immune gene signature for hepatocellular carcinoma: machine learning and multi-omics analysis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1606711

By:

Pu, Cheng;
Pu, Lei;
Zhang, Xiaoyan;
He, Qian;
Zhou, Jiacheng;
Li, Jianyue

Publication type:

Article

Overexpression of CTLA-4 and fibronectin, and lower expression of CD137 (4-1BB) is associated with brain metastasis of primary skin melanomas. An analysis of local immune response by digital spatial profiling.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1578986

By:

Najjary, Shiva;
Amery, Nur al;
Huang, Mengqi;
Vadgama, Disha;
van Akkooi, Alexander C. J.;
Gilhuis, H. Jacobus;
Belcaid, Zineb;
Mustafa, Dana;
Kros, Johan M.

Publication type:

Article

Machine learning combined multi-omics analysis to explore key oxidative stress features in systemic lupus erythematosus.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1567466

By:

Zhou, Hongwei;
Li, Xiaoqing;
Zhang, Yanyu;
Wei, Feng;
Liu, Zhiyu;
Zhao, Yan;
Zhuang, Xubo;
Liu, Xia;
Zhou, Haizhou

Publication type:

Article

Integrative bioinformatics analysis of pyroptosis-related genes and immune infiltration patterns in childhood asthma.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1557709

By:

Lian, Di;
Lin, Chenye;
Xie, Meiling;
Wei, JianXing;
Huang, Xueling;
Lian, Ke;
Tang, Qiuyu

Publication type:

Article

CHIP mediates glucagon action on hepatic glucose production via regulating Smad3 ubiquitination.

Published in:

Diabetes, Obesity & Metabolism, 2025, v. 27, n. 8, p. 4499, doi. 10.1111/dom.16493

By:

Pan, Quan;
Ai, Weiqi;
Chen, Yunmei;
Shen, Zheng;
Yang, Wanbao;
Jiang, Wen;
Guo, Shaodong

Publication type:

Article

Identification and validation of key genes involved in cellular senescence in multiple sclerosis using bioinformatics.

Published in:

Journal of Chinese Pharmaceutical Sciences, 2025, v. 34, n. 6, p. 530, doi. 10.5246/jcps.2025.06.040

By:

Xiaoqin Zhang;
Qiuhong Qin;
Xiaojie Li;
Jiangang Yang;
Jibin Ma;
Jianping Ren

Publication type:

Article

A multi-gene predictive model for the radiation sensitivity of nasopharyngeal carcinoma based on machine learning.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.99849

By:

Kailai Li;
Junyi Liang;
Nan Li;
Jianbo Fang;
Xinyi Zhou;
Jian Zhang;
Anqi Lin;
Peng Luo;
Hui Meng

Publication type:

Article

Study of ACE gene and its allele polymorphism in Chronic Kidney Disease patients.

Published in:

Medica Innovatica, 2024, v. 13, n. 2, p. 1

By:

Kulkarni, Umesh K.;
Padeyappanavar, Kiran;
Nikam, Kiran S.;
Naglikar, Amarappa S.;
Kulkarni, Deepali U.;
Mishrikoti, Harsh H.

Publication type:

Article

Characterization of glutamine synthetase involved in the fecundity of Rhopalosiphum padi.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-05567-z

By:

Li, Xing-Ye;
Wang, Jie-Qiong;
Zheng, Kang-Wu;
Li, Yu-Ting

Publication type:

Article

The association of PTEN/PI3K/Akt pathway gene expression with insulin indices in adipose tissues of non-diabetic female adults: a cross-sectional study.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-05233-4

By:

Zarkesh, Maryam;
Saba, Romina;
Aghazadeh, Hamidreza;
Teymoori, Farshad;
Akbarzadeh, Mahdi;
Asghari, Golaleh;
Montazeri, Marzieh;
Ghasemi, Asghar;
Yuzbashian, Emad;
Zadeh-Vakili, Azita;
Hedayati, Mehdi;
Khalaj, Alireza

Publication type:

Article

Role of circulating microRNAs in tetralogy of Fallot.

Published in:

Advances in Interventional Cardiology / Postępy w Kardiologii Interwencyjnej, 2025, v. 21, n. 2, p. 247, doi. 10.5114/aic.2025.151804

By:

Huesca-Gomez, Claudia;
Gonzalez-Moyotl, Nadia;
Romero-Maldonado, Silvia;
Samano, Reyna;
Gamboa, Ricardo

Publication type:

Article

RNA G-quadruplexes: emerging regulators of gene expression and therapeutic targets.

Published in:

Functional & Integrative Genomics, 2025, v. 25, n. 1, p. 1, doi. 10.1007/s10142-025-01656-4

By:

Ruzi, Zukela;
Zha, Wei;
Yuan, Huang Yuan;
Liu, Jiaorui

Publication type:

Article

LNP-enclosed NamiRNA inhibits pancreatic cancer proliferation and migration via dual pathways.

Published in:

Journal of Nanobiotechnology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12951-025-03550-4

By:

Yu, Chao;
Fang, Zhou;
Xie, Qingyu;
Wu, Zhuo;
Huang, Peixian;
Yu, Jinlong;
Chen, Rufu

Publication type:

Article

HIF-1α and HIF-2α: synergistic regulation of glioblastoma malignant progression during hypoxia and apparent chemosensitization in response to hyperbaric oxygen.

Published in:

Cancer Cell International, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12935-025-03823-w

By:

Wang, Pan;
Gong, Sheng;
Liao, Bin;
Liu, Jie;
Zhao, Lu;
Wu, Nan

Publication type:

Article

Genome-wide identification, transcriptome dynamics, and expression regulation of the key lignin biosynthesis gene families PAL and CAD in black walnut shell.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06884-1

By:

Zhou, Huijuan;
Liu, Hengzhao;
Ma, Jiayu;
Yue, Ming;
Wang, Yaling;
Zhao, Peng;
Chen, Zhikun

Publication type:

Article

Joint analysis of transcriptome and metabolome on the accumulation mechanism of flavonoids in quinoa seedlings under flooding stress.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06867-2

By:

Wang, Xuqin;
Zhang, Ping;
Qin, Zhiwei;
Jiang, Guofei;
Bai, Yutao;
Zhang, Lingyuan;
Liu, Junna;
Li, Li;
Li, Hanxue;
Huang, Liubin;
Yang, Jie;
Xie, Yuming;
Zhou, Jianlong;
Xia, Huanyao;
Qin, Peng

Publication type:

Article

GHMP gene family: identification, evolutionary and expression analysis under various exogenous hormones and abiotic stress in tomato.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06857-4

By:

Yang, Haitao;
Bai, Xin;
Muhammad, Tayeb;
Yang, Tao;
Jia, Chunping;
Wang, Baike;
Yu, Qinghui;
Wang, Juan

Publication type:

Article

Transcriptome-wide identification and systematic analysis of the Retrotransposon genes and their roles in ginsenoside biosynthesis in Panax ginseng.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06776-4

By:

Wang, Chaofan;
Liu, Ruicen;
Wang, Dinghui;
Li, Li;
Jiang, Yue;
Wang, Yanfang;
Wang, Kangyu;
Zhao, Mingzhu;
Wang, Yi;
Zhang, Meiping

Publication type:

Article

Linking key genes to the stay-green phenotype for climate-smart Triticum aestivum L.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06831-0

By:

Abbas, Asad;
He, Jing;
Wang, Yuanyuan;
Jiang, Wei;
Naznin, Afroz;
Budhathoki, Rajiv;
Bose, Jayakumar;
Donovan-Mak, Michelle;
Zhou, Meixue;
Li, Chengdao;
Varshney, Rajeev K.;
Chen, Zhong-Hua

Publication type:

Article

Analysing the loss of embryogenic competence in long-term cell lines of Solanum betaceum Cav.: involvement of miR827, phosphate and sugar.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06786-2

By:

Cordeiro, Daniela;
Canhoto, Jorge;
Correia, Sandra

Publication type:

Article

Dissection of genetic basis underlying heat stress response of Apis cerana.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11714-7

By:

Li, Ao-Mei;
Pang, Chun-Xiu;
Cai, Xiao-Lin;
Zhuo, Fu-Chang;
Hu, Bo;
Huang, Xue-Hua;
Huang, Jia-Xing;
Lu, Yu-Ming

Publication type:

Article