Works about FUNGAL genomes

Results: 378

Patterns of Intron Gain and Loss in Fungi.

Published in:

PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020422

By:

Nielsen, Cydney B;
Friedman, Brad;
Birren, Bruce;
Burge, Christopher B;
Galagan, James E

Publication type:

Article

MycopathologiaGENOMES: The New 'Home' for the Publication of Fungal Genomes.

Published in:

2019

By:

Mac Aogáin, Micheál;
Chaturvedi, Vishnu;
Chotirmall, Sanjay H.

Publication type:

Editorial

Genetic Manipulations in Dermatophytes.

Published in:

Mycopathologia, 2017, v. 182, n. 1/2, p. 33, doi. 10.1007/s11046-016-0039-y

By:

Alshahni, Mohamed;
Yamada, Tsuyoshi

Publication type:

Article

Characterization and organization of telomeric-linked helicase (tlh) gene families in Fusarium oxysporum.

Published in:

Current Genetics, 2024, v. 70, n. 1, p. 1, doi. 10.1007/s00294-024-01303-8

By:

Salimi, Sahar;
Abdi, M. Foad;
Rahnama, Mostafa

Publication type:

Article

MpSaci is a widespread gypsy- Ty3 retrotransposon highly represented by non-autonomous copies in the Moniliophthora perniciosa genome.

Published in:

Current Genetics, 2015, v. 61, n. 2, p. 185, doi. 10.1007/s00294-014-0469-3

By:

Pereira, Jorge;
Araújo, Elza;
Brommonschenkel, Sérgio;
Queiroz, Casley;
Costa, Gustavo;
Carazzolle, Marcelo;
Pereira, Gonçalo;
Queiroz, Marisa

Publication type:

Article

Multiple displacement amplification of whole genomic DNA from urediospores of Puccinia striiformis f. sp. tritici.

Published in:

Current Genetics, 2015, v. 61, n. 2, p. 221, doi. 10.1007/s00294-014-0470-x

By:

Zhang, R.;
Ma, Z.;
Wu, B.

Publication type:

Article

Optimization of genome shuffling for high-yield production of the antitumor deacetylmycoepoxydiene in an endophytic fungus of mangrove plants.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 17, p. 7491, doi. 10.1007/s00253-016-7457-0

By:

Wang, Mingzi;
Zhang, Wei;
Xu, Weikai;
Shen, Yuemao;
Du, Liangcheng

Publication type:

Article

The Ifchit1 chitinase gene acts as a critical virulence factor in the insect pathogenic fungus Isaria fumosorosea.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 12, p. 5491, doi. 10.1007/s00253-016-7308-z

By:

Huang, Zhen;
Hao, Yongfen;
Gao, Tianni;
Huang, Yü;
Ren, Shunxiang;
Keyhani, Nemat

Publication type:

Article

Fungal biodiversity to biotechnology.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 6, p. 2567, doi. 10.1007/s00253-016-7305-2

By:

Chambergo, Felipe;
Valencia, Estela

Publication type:

Article

C7-prenylation of tryptophanyl and O-prenylation of tyrosyl residues in dipeptides by an Aspergillus terreus prenyltransferase.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 4, p. 1719, doi. 10.1007/s00253-014-5999-6

By:

Wunsch, Carsten;
Zou, Hui-Xi;
Linne, Uwe;
Li, Shu-Ming

Publication type:

Article

Aspergillus niger RhaR, a regulator involved in l-rhamnose release and catabolism.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 12, p. 5531, doi. 10.1007/s00253-014-5607-9

By:

Gruben, Birgit;
Zhou, Miaomiao;
Wiebenga, Ad;
Ballering, Joost;
Overkamp, Karin;
Punt, Peter;
Vries, Ronald

Publication type:

Article

Genomic structural variations contribute to trait improvement during whole-genome shuffling of yeast.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 7, p. 3059, doi. 10.1007/s00253-013-5423-7

By:

Zheng, Dao-Qiong;
Chen, Jie;
Zhang, Ke;
Gao, Ke-Hui;
Li, Ou;
Wang, Pin-Mei;
Zhang, Xiao-Yang;
Du, Feng-Guang;
Sun, Pei-Yong;
Qu, Ai-Min;
Wu, Shuang;
Wu, Xue-Chang

Publication type:

Article

Carbo-loading in Coccidioides spp.: A quantitative analysis of CAZyme abundance and resulting glycan populations.

Published in:

Glycobiology, 2020, v. 30, n. 3, p. 186, doi. 10.1093/glycob/cwz092

By:

Mitchell, Natalie M;
Grys, Thomas E;
Lake, Douglas F

Publication type:

Article

An in-depth evaluation of metagenomic classifiers for soil microbiomes.

Published in:

Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00561-w

By:

Edwin, Niranjana Rose;
Fitzpatrick, Amy Heather;
Brennan, Fiona;
Abram, Florence;
O'Sullivan, Orla

Publication type:

Article

Genomic and transcriptomic comparison of Aspergillus oryzae strains: a case study in soy sauce koji fermentation.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 9, p. 839, doi. 10.1007/s10295-018-2059-8

By:

Zhong, Yiyi;
Lu, Xi;
Xing, Lei;
Ho, Shiu Woon Allen;
Kwan, Hoi Shan

Publication type:

Article

Improvement of robustness and ethanol production of ethanologenic Saccharomyces cerevisiae under co-stress of heat and inhibitors.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2012, v. 39, n. 1, p. 73, doi. 10.1007/s10295-011-1001-0

By:

Lu, Ying;
Cheng, Yan-Fei;
He, Xiu-Ping;
Guo, Xue-Na;
Zhang, Bo-Run

Publication type:

Article

The complete mitochondrial genome of a wood-decaying fungus Vanderbylia fraxinea (Polyporaceae, Polyporales).

Published in:

Mitochondrial DNA: Resources, 2023, v. 8, n. 11, p. 1187, doi. 10.1080/23802359.2023.2275832

By:

Sung-Eun Cho;
Heonil Kang;
Dong-Hyeon Lee;
Sang-Tae Seo;
Namkyu Kim;
Sanggon Lee;
Misong Kim;
Keumchul Shin

Publication type:

Article

A phylogenomic tree of fungi: evolutionary relationships among Calonectria ilicicola and 586 fungal mitochondrial genomes.

Published in:

Mitochondrial DNA: Resources, 2020, v. 5, n. 2, p. 1709, doi. 10.1080/23802359.2020.1749163

By:

Gai, Yunpeng;
Pan, Ruqian;
Peng, Xujian

Publication type:

Article

The complete mitochondrial genome of the Basidiomycete fungus <italic>Pleurotus cornucopiae</italic> (Paulet) Rolland.

Published in:

Mitochondrial DNA: Resources, 2018, v. 3, n. 1, p. 73, doi. 10.1080/23802359.2017.1422405

By:

Xu, Li-Ming;
Hinsinger, Damien Daniel;
Jiang, Guo-Feng

Publication type:

Article

The complete mitochondrial genome of Alternaria alternata (Hypocreales: Nectriaceae).

Published in:

Mitochondrial DNA: Resources, 2017, v. 2, n. 2, p. 587, doi. 10.1080/23802359.2017.1372720

By:

Liao, Min;
Chen, Cheng;
Li, Qiang

Publication type:

Article

Multiomic analysis to identify host and microbiome contributions to digestibility in beef cattle.

Published in:

2024

By:

O’Hara, Eóin;
Dubois, Megan;
Ribeiro, Gabriel O.;
Gruninger, Robert J.

Publication type:

Abstract

Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0267-x

By:

Mengwei Yao;
Wenman Li;
Zihong Duan;
Yinliang Zhang;
Rong Jia

Publication type:

Article

Meeting Report: Fungal ITS Workshop (October 2012).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 118, doi. 10.4056/sigs.3737409

By:

Bates, Scott;
Ahrendt, Steven;
Bik, Holly;
Bruns, Thomas;
Caporaso, J.;
Cole, James;
Dwan, Michael;
Fierer, Noah;
Gu, Dai;
Houston, Shawn;
Knight, Rob;
Leff, Jon;
Lewis, Christopher;
Maestre, Juan;
McDonald, Daniel;
Nilsson, R.;
Porras-Alfaro, Andrea;
Robert, Vincent;
Schoch, Conrad;
Scott, James

Publication type:

Article

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.

Published in:

GigaScience, 2015, v. 4, p. 1, doi. 10.1186/s13742-015-0094-1

By:

Olsen, Remi-Andre;
Bunikis, Ignas;
Tiukova, Ievgeniia;
Holmberg, Kicki;
Lötstedt, Britta;
Pettersson, Olga Vinnere;
Passoth, Volkmar;
Käller, Max;
Vezzi, Francesco

Publication type:

Article

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01168

By:

Sperschneider, Jana;
Williams, Angela H.;
Hane, James K.;
Singh, Karam B.;
Taylor, Jennifer M.

Publication type:

Article

Discovering the hidden function in fungal genomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52568-z

By:

Gervais, Nicholas C.;
Shapiro, Rebecca S.

Publication type:

Article

In Silico Sequence Analysis Reveals New Characteristics of Fungal NADPH Oxidase Genes.

Published in:

Mycobiology, 2014, v. 42, n. 3, p. 241, doi. 10.5941/MYCO.2014.42.3.241

By:

Détry, Nicolas;
Jaeyoung Choi;
Hsiao-Che Kuo;
Asiegbu, Fred O.;
Yong-Hwan Lee

Publication type:

Article

Cloning and Sequence Analysis of the Cellobiohydrolase I Genes from Some Basidiomycetes.

Published in:

Mycobiology, 2012, v. 40, n. 2, p. 107, doi. 10.5941/MYCO.2012.40.2.107

By:

Chukeatirote, Ekachai;
Maharachchikumbura, Sajeewa S. N.;
Wongkham, Shannaphimon;
Sysouphanthong, Phongeun;
Phookamsak, Rungtiwa;
Hyde, Kevin D.

Publication type:

Article

(Post-)Genomics approaches in fungal research.

Published in:

Briefings in Functional Genomics, 2014, v. 13, n. 6, p. 424, doi. 10.1093/bfgp/elu028

By:

Aguilar-Pontes, María Victoria;
de Vries, Ronald P.;
Zhou, Miaomiao

Publication type:

Article

Elucidation of primary metabolic pathways in Aspergillus species: Orphaned research in characterizing orphan genes.

Published in:

Briefings in Functional Genomics, 2014, v. 13, n. 6, p. 451, doi. 10.1093/bfgp/elu029

By:

Andersen, Mikael Rørdam

Publication type:

Article

Genome assembly of two California isolates of Seiridium cardinale (BM-138-000494 and BM-138-000479).

Published in:

Journal of Plant Pathology, 2024, v. 106, n. 3, p. 1389, doi. 10.1007/s42161-024-01665-5

By:

Scali, Edoardo;
Rocca, Gianni Della;
Danti, Roberto;
Garbelotto, Matteo;
Barberini, Sara;
Emiliani, Giovanni

Publication type:

Article

Transcriptome and proteome analyses of proteases in biotroph fungal pathogen Cladosporium fulvum.

Published in:

Journal of Plant Pathology, 2020, v. 102, n. 2, p. 377, doi. 10.1007/s42161-019-00433-0

By:

Karimi Jashni, Mansoor;
van der Burgt, Ate;
Battaglia, Evy;
Mehrabi, Rahim;
Collemare, Jérôme;
de Wit, Pierre J. G. M.

Publication type:

Article

How genomics can help unravel the evolution of endophytic fungi.

Published in:

World Journal of Microbiology & Biotechnology, 2025, v. 41, n. 5, p. 1, doi. 10.1007/s11274-025-04375-x

By:

dos Reis, Jefferson Brendon Almeida;
Steindorff, Andrei Stecca;
Lorenzi, Adriana Sturion;
Pinho, Danilo Batista;
do Vale, Helson Mario Martins;
Pappas Jr., Georgios Joannis

Publication type:

Article

Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10391-2

By:

Rosling, Anna;
Eshghi Sahraei, Shadi;
Kalsoom Khan, Faheema;
Desirò, Alessandro;
Bryson, Abigail E;
Mondo, Stephen J;
Grigoriev, Igor V;
Bonito, Gregory;
Sánchez-García, Marisol

Publication type:

Article

Next-generation fungal identification using target enrichment and Nanopore sequencing.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09691-w

By:

Yu, Pei-Ling;
Fulton, James C.;
Hudson, Owen H.;
Huguet-Tapia, Jose C.;
Brawner, Jeremy T.

Publication type:

Article

Genome sequence of a novel endornavirus from the phytopathogenic fungus Alternaria brassicicola.

Published in:

Archives of Virology, 2015, v. 160, n. 7, p. 1827, doi. 10.1007/s00705-015-2426-y

By:

Shang, Hong-Hong;
Zhong, Jie;
Zhang, Ru-Jia;
Chen, Chuan-Yuan;
Gao, Bi-Da;
Zhu, Hong-Jian

Publication type:

Article

Improving candidate Biosynthetic Gene Clusters in fungi through reinforcement learning.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 3984, doi. 10.1093/bioinformatics/btac420

By:

Almeida, Hayda;
Tsang, Adrian;
Diallo, Abdoulaye Baniré

Publication type:

Article

Genetic diversity and structure of core collection of winter mushroom (Flammulina velutipes) developed by genomic SSR markers.

Published in:

Hereditas, 2017, p. 1, doi. 10.1186/s41065-017-0038-0

By:

Xiao Bin Liu;
Jing Li;
Yang, Zhu L.

Publication type:

Article

A minimal Fanconi Anemia complex in early diverging fungi.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-60318-w

By:

Barua, Drishtee;
Płecha, Magdalena;
Muszewska, Anna

Publication type:

Article

Organellar Introns in Fungi, Algae, and Plants.

Published in:

Cells (2073-4409), 2021, v. 10, n. 8, p. 2001, doi. 10.3390/cells10082001

By:

Mukhopadhyay, Jigeesha;
Hausner, Georg

Publication type:

Article

Structure‐guided insights into the biology of fungal effectors.

Published in:

New Phytologist, 2025, v. 246, n. 4, p. 1460, doi. 10.1111/nph.70075

By:

Le Naour‐‐Vernet, Marie;
Lahfa, Mounia;
Maidment, Josephine H. R.;
Padilla, André;
Roumestand, Christian;
de Guillen, Karine;
Kroj, Thomas;
Césari, Stella

Publication type:

Article

Lichens are a treasure chest of bioactive compounds: fact or fake?

Published in:

New Phytologist, 2025, v. 246, n. 2, p. 389, doi. 10.1111/nph.70034

By:

Pasinato, Anna;
Singh, Garima

Publication type:

Article

Origins of xyloglucan‐degrading enzymes in fungi.

Published in:

2025

By:

Trudeau, Emily D.;
Brumer, Harry;
Berbee, Mary L.

Publication type:

Literature Review

Tracking signatures of selection in natural populations of ectomycorrhizal fungi – progress, challenges, and prospects.

Published in:

New Phytologist, 2024, v. 242, n. 2, p. 384, doi. 10.1111/nph.19553

By:

Dauphin, Benjamin;
Peter, Martina

Publication type:

Article

A chromosome‐scale genome assembly reveals a highly dynamic effector repertoire of wheat powdery mildew.

Published in:

New Phytologist, 2019, v. 221, n. 4, p. 2176, doi. 10.1111/nph.15529

By:

Müller, Marion C.;
Praz, Coraline R.;
Sotiropoulos, Alexandros G.;
Menardo, Fabrizio;
Kunz, Lukas;
Schudel, Seraina;
Oberhänsli, Simone;
Poretti, Manuel;
Wehrli, Andreas;
Bourras, Salim;
Keller, Beat;
Wicker, Thomas

Publication type:

Article

Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts.

Published in:

New Phytologist, 2019, v. 221, n. 3, p. 1556, doi. 10.1111/nph.15472

By:

Sun, Xuepeng;
Chen, Wenbo;
Ivanov, Sergey;
MacLean, Allyson M.;
Wight, Haley;
Ramaraj, Thiruvarangan;
Mudge, Joann;
Harrison, Maria J.;
Fei, Zhangjun

Publication type:

Article

Ericoid mycorrhizal fungi and their genomes: another side to the mycorrhizal symbiosis?

Published in:

New Phytologist, 2018, v. 220, n. 4, p. 1141, doi. 10.1111/nph.15218

By:

Perotto, Silvia;
Daghino, Stefania;
Martino, Elena

Publication type:

Article

Does genotypic and species diversity of mycorrhizal plants and fungi affect ecosystem function?

Published in:

New Phytologist, 2018, v. 220, n. 4, p. 1122, doi. 10.1111/nph.15010

By:

Hazard, Christina;
Johnson, David

Publication type:

Article

New insights into plant-microbe interactions through advances in fungal genetics.

Published in:

New Phytologist, 2017, v. 216, n. 3, p. 647, doi. 10.1111/nph.14825

By:

Lorrain, Cécile;
Gervais, Julie;
Petit, Yohann;
Plett, Jonathan M.

Publication type:

Article

Biology and evolution of arbuscular mycorrhizal symbiosis in the light of genomics.

Published in:

New Phytologist, 2017, v. 213, n. 2, p. 531, doi. 10.1111/nph.14263

By:

Kamel, Laurent;
Keller‐Pearson, Michelle;
Roux, Christophe;
Ané, Jean‐Michel

Publication type:

Article