Works about EUKARYOTIC genomes
Results: 1102
SatXplor—a comprehensive pipeline for satellite DNA analyses in complex genome assemblies.
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- Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae660
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- Article
Genome-Wide Identification of Alternative Splicing in Botrytis cinerea During Infection Stage of Solanum lycopersicum.
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- Microorganisms, 2025, v. 13, n. 2, p. 360, doi. 10.3390/microorganisms13020360
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Identification and chromosome mapping of repetitive elements in the Astyanax scabripinnis (Teleostei: Characidae) species complex.
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- Genetica, 2015, v. 143, n. 1, p. 55, doi. 10.1007/s10709-014-9813-2
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A novel cluster of mariner-like elements belonging to mellifera subfamily from spiders and insects: implications of recent horizontal transfer on the South-West Islands of Japan.
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- Genetica, 2014, v. 142, n. 2, p. 149, doi. 10.1007/s10709-014-9762-9
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An empirical analysis of mtSSRs: could microsatellite distribution patterns explain the evolution of mitogenomes in plants?
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- Functional & Integrative Genomics, 2022, v. 22, n. 1, p. 35, doi. 10.1007/s10142-021-00815-7
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Horizontal gene transfer in plants.
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- Functional & Integrative Genomics, 2014, v. 14, n. 1, p. 23, doi. 10.1007/s10142-013-0345-0
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Mapping of <italic>Hieracium</italic> (Asteraceae) chromosomes with genus-specific satDNA elements derived from next-generation sequencing data.
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- Plant Systematics & Evolution, 2018, v. 304, n. 3, p. 387, doi. 10.1007/s00606-017-1483-y
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NIa-Pro of Papaya ringspot virus interacts with Carica papaya eukaryotic translation initiation factor 3 subunit G (CpeIF3G).
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- Virus Genes, 2015, v. 50, n. 1, p. 97, doi. 10.1007/s11262-014-1145-x
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CASPredict: a web service for identifying Cas proteins.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11887
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A systematic review of the application of machine learning in the detection and classification of transposable elements.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.8311
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Distributed Bayesian networks reconstruction on the whole genome scale.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5692
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Transformation and regeneration cucurbits plants (Cucurbitaceae).
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- Biotechnologia, 2018, v. 99, n. 3, p. 278
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Chromosomal mapping of two Mariner-like elements in the grasshopper Abracris flavolineata (Orthoptera: Acrididae) reveals enrichment in euchromatin.
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- European Journal of Entomology, 2014, v. 111, n. 3, p. 329, doi. 10.14411/eje.2014.052
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- Article
Effects of Taxon Sampling in Reconstructions of Intron Evolution.
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- International Journal of Genomics, 2013, p. 1, doi. 10.1155/2013/671316
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Decoding the general role of tRNA queuosine modification in eukaryotes.
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- Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-024-83451-y
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- Article
DeepReg: a deep learning hybrid model for predicting transcription factors in eukaryotic and prokaryotic genomes.
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- Scientific Reports, 2024, v. 12, n. 1, p. 1, doi. 10.1038/s41598-024-59487-5
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Evolution of Repetitive Elements, Their Roles in Homeostasis and Human Disease, and Potential Therapeutic Applications.
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- Biomolecules (2218-273X), 2024, v. 14, n. 10, p. 1250, doi. 10.3390/biom14101250
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Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis.
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- Biomolecules (2218-273X), 2024, v. 14, n. 8, p. 915, doi. 10.3390/biom14080915
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Flexible Attachment and Detachment of Centromeres and Telomeres to and from Chromosomes.
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- Biomolecules (2218-273X), 2023, v. 13, n. 6, p. 1016, doi. 10.3390/biom13061016
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Lifetime Impact of Cow's Milk on Overactivation of mTORC1: From Fetal to Childhood Overgrowth, Acne, Diabetes, Cancers, and Neurodegeneration.
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- Biomolecules (2218-273X), 2021, v. 11, n. 3, p. 404, doi. 10.3390/biom11030404
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G-Quadruplexes in the Archaea Domain.
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- Biomolecules (2218-273X), 2020, v. 10, n. 9, p. 1349, doi. 10.3390/biom10091349
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DOT1L and H3K79 Methylation in Transcription and Genomic Stability.
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- Biomolecules (2218-273X), 2018, v. 8, n. 1, p. 11, doi. 10.3390/biom8010011
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The Unfolded Protein Response Supports Plant Development and Defense as well as Responses to Abiotic Stress.
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- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00344
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A Briefly Argued Case That Asgard Archaea Are Part of the Eukaryote Tree.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01896
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- Article
Evaluation of controls, quality control assays, and protocol optimisations for PacBio HiFi sequencing on diverse and challenging samples.
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- Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2024.1505839
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- Article
RNA Interference Machinery - A Dental Insight.
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- Journal of Advanced Oral Research, 2012, v. 3, n. 2, p. 1, doi. 10.1177/2229411220120201
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Evolutionary and Expression Analysis of the Pig MAGE Gene Family.
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- Animals (2076-2615), 2024, v. 14, n. 14, p. 2095, doi. 10.3390/ani14142095
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Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro.
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- Skeletal Muscle, 2017, v. 7, p. 1, doi. 10.1186/s13395-017-0122-1
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The R-Operon: A Model of Repetitive DNA-Organized Transcriptional Compartmentation of Eukaryotic Chromosomes for Coordinated Gene Expression.
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- Genes, 2016, v. 7, n. 4, p. 16, doi. 10.3390/genes7040016
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Chromatin Insulators and Topological Domains: Adding New Dimensions to 3D Genome Architecture.
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- Genes, 2015, v. 6, n. 3, p. 790, doi. 10.3390/genes6030790
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Contribution of Topological Domains and Loop Formation to 3D Chromatin Organization.
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- Genes, 2015, v. 6, n. 3, p. 734, doi. 10.3390/genes6030734
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Mathematical Algorithm for Identification of Eukaryotic Promoter Sequences.
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- Symmetry (20738994), 2021, v. 13, n. 6, p. 917, doi. 10.3390/sym13060917
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Minimization and complete loss of general transcription factor proteins in the intracellular parasite Encephalitozoon cuniculi.
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- Transcription (2154-1264), 2024, v. 15, n. 3-5, p. 97, doi. 10.1080/21541264.2024.2350162
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Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom.
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- Transcription (2154-1264), 2021, v. 12, n. 4, p. 182, doi. 10.1080/21541264.2021.1973865
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Long noncoding RNAs shape transcription in plants.
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- Transcription (2154-1264), 2020, v. 11, n. 3/4, p. 160, doi. 10.1080/21541264.2020.1764312
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An end in sight? Xrn2 and transcriptional termination by RNA polymerase II.
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- Transcription (2154-1264), 2018, v. 9, n. 5, p. 321, doi. 10.1080/21541264.2018.1498708
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Alternative mRNA processing sites decrease genetic variability while increasing functional diversity.
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- Transcription (2154-1264), 2018, v. 9, n. 2, p. 75, doi. 10.1080/21541264.2017.1373891
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Specialization versus conservation: How Pol I and Pol III use the conserved architecture of the pre-initiation complex for specialized transcription.
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- Transcription (2154-1264), 2016, v. 7, n. 4, p. 127, doi. 10.1080/21541264.2016.1203628
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Regulation of transcription factors via natural decoys in genomic DNA.
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- Transcription (2154-1264), 2016, v. 7, n. 4, p. 115, doi. 10.1080/21541264.2016.1188873
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Core promoter-selective coregulators of transcription by RNA polymerase II.
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- Transcription (2154-1264), 2012, v. 3, n. 6, p. 1, doi. 10.4161/trns.21846
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Ribosomal DNA clusters and telomeric (TTAGG)n repeats in blue butterflies (Lepidoptera, Lycaenidae) with low and high chromosome numbers.
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- Comparative Cytogenetics, 2015, v. 9, n. 2, p. 161, doi. 10.3897/CompCytogen.v9i2.4715
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- Article
Use of Metagenomic Whole Genome Shotgun Sequencing Data in Taxonomic Assignment of Dipterygium glaucum Rhizosphere and Surrounding Bulk Soil Microbiomes, and Their Response to Watering.
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- Sustainability (2071-1050), 2022, v. 14, n. 14, p. N.PAG, doi. 10.3390/su14148764
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- Article
Identification of a novel pentatricopeptide repeat subfamily with a C-terminal domain of bacterial origin acquired via ancient horizontal gene transfer.
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- BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-525
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Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML.
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- BMC Research Notes, 2012, v. 5, n. 1, p. 88, doi. 10.1186/1756-0500-5-88
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- Article
The PCNA pseudogenes in the human genome.
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- BMC Research Notes, 2012, v. 5, n. 1, p. 87, doi. 10.1186/1756-0500-5-87
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- Article
Development of SSR markers in Paeonia based on De Novo transcriptomic assemblies.
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- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227794
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De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.
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- PLoS ONE, 2019, v. 14, n. 12, p. N.PAG, doi. 10.1371/journal.pone.0223466
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Double triage to identify poorly annotated genes in maize: The missing link in community curation.
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- PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0224086
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Butterfly Genomics: Insights from the Genome of Melitaea cinxia.
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- Annales Zoologici Fennici, 2017, v. 54, n. 1-4, p. 275, doi. 10.5735/086.054.0123
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Effects of silver nanoparticles on zebrafish ( Danio rerio) and Escherichia coli (ATCC 25922): A comparison of toxicity based on total surface area versus mass concentration of particles in a model eukaryotic and prokaryotic system.
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- Environmental Toxicology & Chemistry, 2012, v. 31, n. 8, p. 1793, doi. 10.1002/etc.1881
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