Works about DNA-ligand interactions

Results: 194

The Structural Basis for Promoter --35 Element Recognition by the Group IV σ Factors.

Published in:

PLoS Biology, 2006, v. 4, n. 9, p. 1491, doi. 10.1371/journal.pbio.0040269

By:

Lane, William J.;
Darst, Seth A.

Publication type:

Article

Effect of chromatographic conditions and plasmid DNA size on the dynamic binding capacity of a monolithic support.

Published in:

Journal of Separation Science, 2014, v. 37, n. 17, p. 2284, doi. 10.1002/jssc.201400127

By:

Bicho, Diana;
Sousa, Ângela;
Sousa, Fani;
Queiroz, João;
Tomaz, Cãndida

Publication type:

Article

Affinity purification of plasmid DNA by temperature-triggered precipitation.

Published in:

Biotechnology & Bioengineering, 2004, v. 85, n. 3, p. 293, doi. 10.1002/bit.10890

By:

Jan Kostal;
Ashok Mulchandani;
Wilfred Chen

Publication type:

Article

Mad linker phosphorylations control the intensity and range of the BMP-activity gradient in developing Drosophila tissues.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06927

By:

Aleman, Abigail;
Rios, Marlyn;
Juarez, Matthew;
Lee, Daniel;
Chen, Annan;
Eivers, Edward

Publication type:

Article

Experimental strategies for studying transcription factor–DNA binding specificities.

Published in:

Briefings in Functional Genomics, 2010, v. 9, n. 5/6, p. 362, doi. 10.1093/bfgp/elq023

By:

Geertz, Marcel;
Maerk, Sebastian J.

Publication type:

Article

Centromere-specific histone Cse4 by the chaperone Scm3.

Published in:

2013

By:

Cho, Uhn-Soo;
Harrison, Stephen C.

Publication type:

Conference Paper/Materials

Bookmarking by specific and nonspecific binding of FoxA1 pioneer factor to mitotic chromosomes.

Published in:

2013

By:

Caravaca, Juan Manuel;
Donahue, Greg;
Becker, Justin S.;
Zaret, Kenneth S.

Publication type:

Conference Paper/Materials

DNA complexes: Durable binders.

Published in:

Nature Chemistry, 2011, v. 3, n. 11, p. 836, doi. 10.1038/nchem.1173

By:

Urbach, Adam R.

Publication type:

Article

A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

Published in:

EMBO Journal, 2000, v. 19, n. 13, p. 3418, doi. 10.1093/emboj/19.13.3418

By:

Ahnert, Peter;
Picha, Kristen Moore;
Patel, Smita S.

Publication type:

Article

Chemistry: Snip it with zinc.

Published in:: Nature, 2008, v. 456, n. 7220, p. 285, doi. 10.1038/456285b
Publication type:: Article

DNA-protector and cytotoxic activity of secoisolariciresinol diglucoside derivatives.

Published in:

Chemistry of Natural Compounds, 2010, v. 46, n. 5, p. 704, doi. 10.1007/s10600-010-9720-4

By:

Stasevich, O.;
Shman, T.;
Mikhalenok, S.;
Kurchenko, V.

Publication type:

Article

Synthesis, spectroscopic, theoretical study, and biological activities of vanadium(IV) and vanadium(V) complexes with isonipecotic acid.

Published in:

Russian Journal of General Chemistry, 2017, v. 87, n. 3, p. 530, doi. 10.1134/S1070363217030240

By:

Jabeen, M.;
Ali, S.;
Shahzadi, S.;
Shahid, M.;
Sharma, S.;
Qanungo, K.

Publication type:

Article

Synthesis, characterization, preliminary biological screening, and interaction studies of the bis(pyridinium)amine compound, 4,4'-[(2-aminophenyl)azanediyl]bis(1-methylpyridin-1-ium)triflate with biological macromolecules.

Published in:

Russian Journal of General Chemistry, 2017, v. 87, n. 3, p. 554, doi. 10.1134/S1070363217030288

By:

Zafar, M.;
Nazar, M.;
Raza, M.;
Mughal, E.;
Dalebrook, A.;
Wright, L.

Publication type:

Article

Cloning and functional characterization of Neisseria gonorrhoeae tonB, exbB and exbD genes.

Published in:

Molecular Microbiology, 1997, v. 24, n. 1, p. 169, doi. 10.1046/j.1365-2958.1997.3421692.x

By:

Biswas, Gour D.;
Anderson, James E.;
Sparling, P. Frederick

Publication type:

Article

Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs.

Published in:

Crystals (2073-4352), 2022, v. 12, n. 12, p. 1717, doi. 10.3390/cryst12121717

By:

Sbirkova-Dimitrova, Hristina;
Rusew, Rusi;
Kuvandjiev, Nikola;
Heroux, Annie;
Doukov, Tzanko;
Shivachev, Boris L.

Publication type:

Article

Dual DNA binding mode of a turn-on red fluorescent probe thiazole coumarin.

Published in:

PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0239145

By:

Ganguly, Sudakshina;
Ghosh, Debasis;
Narayanaswamy, Nagarjun;
Govindaraju, T.;
Basu, Gautam

Publication type:

Article

Comparative in silico study of congocidine congeners as potential inhibitors of African swine fever virus.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221175

By:

Kinyanyi, Dickson;
Amwayi, Peris;
Wamalwa, Mark;
Obiero, George

Publication type:

Article

Design, synthesis, molecular modeling and DNA-binding studies of new barbituric acid derivatives.

Published in:

Journal of the Iranian Chemical Society, 2022, v. 19, n. 9, p. 3887, doi. 10.1007/s13738-022-02576-x

By:

Ebadi, Ahmad;
Najafi, Zahra;
Pakdel-yeganeh, Hamed;
Dastan, Dara;
Chehardoli, Gholamabbas

Publication type:

Article

Crystal structure, DFT study, antimicrobial properties and DNA cleavage potential and thermal behavior of some new mercury complexes.

Published in:

Journal of the Iranian Chemical Society, 2017, v. 14, n. 2, p. 297, doi. 10.1007/s13738-016-0978-8

By:

Montazerozohori, M.;
Mohammadi, H.;
Masoudiasl, A.;
Nasr-Esfahani, M.;
Naghiha, R.;
Assoud, A.

Publication type:

Article

Exo-Taq-Based Detection of DNA-Binding Protein for Homogeneous and Microarray Format.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 4, p. 473, doi. 10.1093/jb/mvi137

By:

Fukumori, Takashi;
Miyachi, Hirotaka;
Yokoyama, Kenji

Publication type:

Article

Interaction of Glycyrrhizin and Glycyrrhetinic Acid with DNA.

Published in:

DNA & Cell Biology, 2012, v. 31, n. 1, p. 114, doi. 10.1089/dna.2011.1287

By:

Nafisi, Shohreh;
Bonsaii, Mahyar;
Manouchehri, Firouzeh;
Abdi, Khosrou

Publication type:

Article

DNA Interaction Studies of Cobalt (II) Mixed-Ligand Complexes Containing Dimethyl-1, 10-Phenanthroline and Dipyrido[3,2-a:2′,3′-c]Phenazine: The Role of Methyl Substitutions on the Mode of Binding.

Published in:

DNA & Cell Biology, 2011, v. 30, n. 7, p. 507, doi. 10.1089/dna.2010.1151

By:

Shahabadi, Nahid;
Kashanian, Soheila;
Mahdavi, Maryam

Publication type:

Article

DNA Interaction Studies of an Anticancer Plant Alkaloid, Vincristine, Using Fourier Transform Infrared Spectroscopy.

Published in:

DNA & Cell Biology, 2010, v. 29, n. 11, p. 693, doi. 10.1089/dna.2010.1035

By:

Tyagi, Gunjan;
Jangir, Deepak K.;
Singh, Parul;
Mehrotra, Ranjana

Publication type:

Article

Synthesis, characterization, DNA interaction and antimicrobial screening of isatin-based polypyridyl mixed-ligand Cu(II) and Zn(II) complexes.

Published in:

Journal of the Serbian Chemical Society, 2010, v. 75, n. 6, p. 773, doi. 10.2298/JSC091020054R

By:

Raman, Natarajan;
Sobha, Sivasangu

Publication type:

Article

Structural studies on ligand-DNA systems: A robust approach in drug design.

Published in:

Journal of Biosciences, 2012, v. 37, n. 3, p. 553, doi. 10.1007/s12038-012-9212-8

By:

Kumar, Surat;
Pandya, Prateek;
Pandav, Kumud;
Gupta, Surendra;
Chopra, Arun

Publication type:

Article

The in vitro nuclear aggregates of polyamines.

Published in:

FEBS Journal, 2009, v. 276, n. 8, p. 2324, doi. 10.1111/j.1742-4658.2009.06960.x

By:

Di Luccia, Aldo;
Picariello, Gianluca;
Iacomino, Giuseppe;
Formisano, Annarita;
Paduano, Luigi;
D’Agostino, Luciano

Publication type:

Article

Interactions between the Fyn SH3-domain and adaptor protein Cbp/PAG derived ligands, effects on kinase activity and affinity.

Published in:

FEBS Journal, 2008, v. 275, n. 19, p. 4863, doi. 10.1111/j.1742-4658.2008.06626.x

By:

Solheim, Silje A.;
Petsalaki, Evangelia;
Stokka, Anne J.;
Russell, Robert B.;
Taskén, Kjetil;
Berge, Torunn

Publication type:

Article

DNA binding and partial nucleoid localization of the chloroplast stromal enzyme ferredoxin:sulfite reductase.

Published in:

FEBS Journal, 2007, v. 274, n. 8, p. 2054, doi. 10.1111/j.1742-4658.2007.05748.x

By:

Sekine, Kohsuke;
Fujiwara, Makoto;
Nakayama, Masato;
Takao, Toshifumi;
Hase, Toshiharu;
Sato, Naoki

Publication type:

Article

Common mode of DNA binding to cold shock domains.

Published in:

FEBS Journal, 2007, v. 274, n. 5, p. 1265, doi. 10.1111/j.1742-4658.2007.05672.x

By:

Max, Klaas E. A.;
Zeeb, Markus;
Bienert, Ralf;
Balbach, Jochen;
Heinemann, Udo

Publication type:

Article

A single mismatch in the DNA induces enhanced aggregation of MutS.

Published in:

FEBS Journal, 2005, v. 272, n. 24, p. 6228, doi. 10.1111/j.1742-4658.2005.04997.x

By:

Nag, Nabanita;
Krishnamoorthy, G.;
Rao, Basuthkar J.

Publication type:

Article

Binding of DNA-bending non-histone proteins destabilizes regular 30-nm chromatin structure.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005365

By:

Bajpai, Gaurav;
Jain, Ishutesh;
Inamdar, Mandar M.;
Das, Dibyendu;
Padinhateeri, Ranjith

Publication type:

Article

COMMD1 disrupts HIF-1alpha/beta dimerization and inhibits human tumor cell invasion.

Published in:

2010

By:

van de Sluis, Bart;
Xicheng Mao;
Yali Zhai;
Groot, Arjan J.;
Vermeulen, Jeroen F.;
van der Wall, Elsken;
van Diest, Paul J.;
Hofker, Marten H.;
Wijmenga, Cisca;
Klomp, Leo W.;
Cho, Kathleen R.;
Fearon, Eric R.;
Vooijs, Marc;
Burstein, Ezra;
Mao, Xicheng;
Zhai, Yali

Publication type:

journal article

Robust $$k$$ -mer frequency estimation using gapped $$k$$ -mers.

Published in:

Journal of Mathematical Biology, 2014, v. 69, n. 2, p. 469, doi. 10.1007/s00285-013-0705-3

By:

Ghandi, Mahmoud;
Mohammad-Noori, Morteza;
Beer, Michael

Publication type:

Article

Interactions of Some Divalent Metal Ions with Thymine and Uracil Thiosemicarbazide Derivatives.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2016, v. 35, n. 5, p. 259, doi. 10.1080/15257770.2016.1143558

By:

Hammud, Hassan H.;
El-Dakdouki, Mohammad H.;
Sonji, Nada;
Sonji, Ghassan;
Bouhadir, Kamal H.

Publication type:

Article

Synthesis, DNA Binding, and Cleavage Studies of Co(III) Complexes with Fused Aromatic NO/NN-Containing Ligands.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2012, v. 31, n. 2, p. 130, doi. 10.1080/15257770.2011.644369

By:

Sudhamani, ChittanahalliN.;
Naik, HalehattyS. Bhojya;
Girija, D.

Publication type:

Article

CU(II) and MN(II) Complexes Containing Macroacyclic Ligand: Synthesis, DNA Binding, and Cleavage Studies.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2012, v. 31, n. 1, p. 1, doi. 10.1080/15257770.2011.636415

By:

Sreekanth, B.;
Krishnamurthy, G.;
Naik, H.S. Bhojya;
Vishnuvardhan, T.K.

Publication type:

Article

IN VITRO DNA BINDING STUDIES OF SELECTED HETEROCYCLIC COMPOUNDS.

Published in:

Indian Drugs, 2018, v. 55, n. 12, p. 24, doi. 10.53879/id.55.12.10994

By:

C., Akhila;
P., Lalitha

Publication type:

Article

Molecular Simulation of Ligand-Binding with DNA: Implications for <sup>125</sup>I-Labeled Pharmaceutical Design.

Published in:

International Journal of Radiation Biology, 2004, v. 80, n. 11/12, p. 921, doi. 10.1080/09553000400017630

By:

Kai Chen;
Adelstein, S. James;
Kassis, Amin I.

Publication type:

Article

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface.

Published in:

BMC Research Notes, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13104-018-3802-y

By:

Denecker, Thomas;
Lelandais, Gaëlle

Publication type:

Article

Binding Properties of Peptidic Affinity Ligands for Plasmid DNA Capture and Detection.

Published in:

AIChE Journal, 2009, v. 55, n. 2, p. 505, doi. 10.1002/aic.11690

By:

Ying Han;
Gras, Sally;
Forde, Gareth M.

Publication type:

Article

The Possible Interaction between Receptor Activator of Nuclear Factor Kappa-B Ligand Expressed by Extramammary Paget Cells and its Ligand on Dermal Macrophages.

Published in:

Journal of Investigative Dermatology, 2015, v. 135, n. 10, p. 2547, doi. 10.1038/jid.2015.199

By:

Kambayashi, Yumi;
Fujimura, Taku;
Furudate, Sadanori;
Asano, Masayuki;
Kakizaki, Aya;
Aiba, Setsuya

Publication type:

Article

Mechanism of DNA Intercalation by Chloroquine Provides Insights into Toxicity.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 3, p. 1410, doi. 10.3390/ijms25031410

By:

Joshi, Joha;
McCauley, Micah J.;
Morse, Michael;
Muccio, Michael R.;
Kanlong, Joseph G.;
Rocha, Márcio S.;
Rouzina, Ioulia;
Musier-Forsyth, Karin;
Williams, Mark C.

Publication type:

Article

Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 19, p. 10801, doi. 10.3390/ijms221910801

By:

Dickerhoff, Jonathan;
Warnecke, Kassandra R.;
Wang, Kaibo;
Deng, Nanjie;
Yang, Danzhou

Publication type:

Article

Design, Synthesis and DNA Interaction Study of New Potential DNA Bis-Intercalators Based on Glucuronic Acid.

Published in:

International Journal of Molecular Sciences, 2013, v. 14, n. 8, p. 16851, doi. 10.3390/ijms140816851

By:

Jiuyang Zhao;
Wei Li;
Rui Ma;
Shaopeng Chen;
Sumei Ren;
Tao Jiang

Publication type:

Article

Free energy calculations offer insights into the influence of receptor flexibility on ligand-receptor binding affinities.

Published in:

Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 8, p. 709, doi. 10.1007/s10822-011-9453-x

By:

Dolenc, Jožica;
Riniker, Sereina;
Gaspari, Roberto;
Daura, Xavier;
van Gunsteren, Wilfred F.

Publication type:

Article

Molecular motions in drug design: the coming age of the metadynamics method.

Published in:

Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 5, p. 395, doi. 10.1007/s10822-011-9415-3

By:

Biarnés, Xevi;
Bongarzone, Salvatore;
Vargiu, Attilio;
Carloni, Paolo;
Ruggerone, Paolo

Publication type:

Article

QSAR analyses on avian influenza virus neuraminidase inhibitors using CoMFA, CoMSIA, and HQSAR.

Published in:

Journal of Computer-Aided Molecular Design, 2006, v. 20, n. 9, p. 549, doi. 10.1007/s10822-006-9080-0

By:

Zheng, Mingyue;
Yu, Kunqian;
Liu, Hong;
Luo, Xiaomin;
Chen, Kaixian;
Zhu, Weiliang;
Jiang, Hualiang

Publication type:

Article

Ligand binding to domain-3 of human serum albumin: a chemometric analysis.

Published in:

Journal of Computer-Aided Molecular Design, 2003, v. 17, n. 2-4, p. 93, doi. 10.1023/A:1025305520585

By:

Hajduk, Philip J.;
Mendoza, Renaldo;
Petros, Andrew M.;
Huth, Jeffrey R.;
Bures, Mark;
Fesik, Stephen W.;
Martin, Yvonne C.

Publication type:

Article

Synthesis, Characterization and Antimicrobial Activity of some Metal Complexes Derived from Thiazole Schiff Bases with In-vitro Cytotoxicity and DNA Cleavage Studies.

Published in:

Indian Journal of Pharmaceutical Education & Research, 2017, v. 51, n. 3, p. 490, doi. 10.5530/ijper.51.3.77

By:

Karabasannavar, Shambuling;
Allolli, Parvati;
Shaikh, Irfan N.;
Kalshetty, Basavaraj M.

Publication type:

Article

Investigation of DNA/BSA binding of three Ru(II) complexes by various spectroscopic methods, molecular docking and their antimicrobial activity.

Published in:

Journal of Coordination Chemistry, 2017, v. 70, n. 21, p. 3790, doi. 10.1080/00958972.2017.1407410

By:

Ravi Kumar, Vuradi;
Nagababu, Penumaka;
Srinivas, G.;
Rajender Reddy, Mallepally;
Vinoda Rani, M.;
Ravi, Mudavath;
Satyanarayana, S.

Publication type:

Article