Works about DNA methylation

Results: 5000

Development and validation of an epigenetic signature of allostatic load.

Published in:

Bioscience Reports, 2025, v. 45, n. 4, p. 247, doi. 10.1042/BSR20241663

By:

Chamberlain, Jonviea D.;
Ackermann, Daniel;
Bochud, Murielle;
Booth, Tom;
Chapatte, Laurence;
Corley, Janie;
Cox, Simon R.;
Harris, Sarah E.;
Kinnaer, Cassandre;
Juster, Robert-Paul;
Locatelli, Isabella;
Nanchen, David;
Ponte, Belène;
Pruijm, Menno;
Pradervand, Sylvain;
Shiels, Paul G.;
Stringhini, Silvia;
Nusslé, Sébastien;
Gonseth-Nusslé, Semira

Publication type:

Article

Brachyury Expression in Atypical Teratoid/Rhabdoid Tumor.

Published in:

International Journal of Surgical Pathology, 2025, v. 33, n. 4, p. 842, doi. 10.1177/10668969241291896

By:

Terzioğlu, Havva Gökçe;
Uzun, Sarp;
Hench, Juergen;
Babaoğlu, Berrin;
Matter, Matthias;
Söylemezoğlu, Figen;
Kösemehmetoğlu, Kemal

Publication type:

Article

Discovery and validation of a novel dual-target blood test for the detection of hepatocellular carcinoma across stages from cirrhosis.

Published in:

BMC Medicine, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12916-025-04115-w

By:

Teng, Wenhao;
Li, Hui;
Yang, Hao;
Chen, Yu;
Xi, Liying;
Xin, Fuli;
Zhang, Aiyuan;
Yu, Lihui;
Zheng, Lu;
Wang, Ming;
Bai, Jian;
Ke, Fayong;
Wang, Yin;
Sun, Fuming;
Zhang, Hui;
Wu, Lin;
Liu, Jingfeng

Publication type:

Article

Reliable investigation of DNA methylation using Oxford nanopore technologies.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99882-0

By:

Doshi, Raj;
Kinnear, Evan;
Chatterjee, Sujan;
Guha, Prasun;
Liu, Qian

Publication type:

Article

Reduced CHH methylation levels reveal a critical role of aging pathway genes in Moso bamboo flowering.

Published in:

Horticulture Plant Journal, 2025, v. 11, n. 3, p. 1341, doi. 10.1016/j.hpj.2024.02.009

By:

Hang Yu;
Min Gao;
Chunce Guo;
Haifeng Wang

Publication type:

Article

MicroRNA‐371–373 cluster and methylome analysis suggests that a subset of 'somatic‐type' malignancies arising in germ cell tumors may originate in yolk sac tumor components.

Published in:

Journal of Pathology, 2025, v. 266, n. 2, p. 160, doi. 10.1002/path.6412

By:

Lobo, João;
Tavares, Nuno Tiago;
Fonseca, Diana;
Jerónimo, Carmen;
Henrique, Rui;
Wyvekens, Nicolas;
Yang, Yiying;
Snuderl, Matija;
Maclean, Fiona;
Gordetsky, Jennifer;
Fletcher, Christopher DM;
Hirsch, Michelle S;
Hornick, Jason L;
Idrees, Muhammad T;
Collins, Katrina;
Warmke, Laura;
Ulbright, Thomas M;
Acosta, Andres M

Publication type:

Article

Visualizing Epigenetics: A Review of Microscopy Techniques for Investigating DNA Methylation Patterns, Chromatin Structure, and Gene Expression.

Published in:

Microscopy & Microanalysis, 2025, v. 31, n. 2, p. 1, doi. 10.1093/mam/ozaf017

By:

Thompson, Anna-Lee C;
Wopereis, Judith L M;
Tekle, Yonas I;
Katz, Laura A

Publication type:

Article

Alteration of methylation pattern and gene expression of FTO, PPARγ and Slc2a4 on pre-diabetes-induced BALB/c mice.

Published in:

Molecular & Cellular Biochemistry, 2025, v. 480, n. 5, p. 2893, doi. 10.1007/s11010-024-05141-7

By:

Listiyani, Priscilla;
Sanjaya, Ricky;
Nathanael, Joshua;
Chandra, Putu Suardana;
Artadana, Ida Bagus Made;
Dwi Putra, Sulistyo Emantoko

Publication type:

Article

Distinct methylomic signatures of high-altitude acclimatization and adaptation in the Tibetan Plateau.

Published in:

Cell Discovery, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41421-025-00795-z

By:

Cheng, Feifei;
Shen, Ren-Juan;
Zheng, Zhili;
Chen, Zhen Ji;
Huang, Peng-Juan;
Feng, Zhuo-Kun;
Li, Xiaoman;
Lin, Na;
Zheng, Meiqin;
Liang, Yuanbo;
Qu, Jia;
Lu, Fan;
Jin, Zi-Bing;
Yang, Jian

Publication type:

Article

Epigenetic modifications in breast cancer: from immune escape mechanisms to therapeutic target discovery.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1584087

By:

Kang, Ziyu;
Wang, Junlin;
Liu, Jiyan;
Du, Li;
Liu, Xiaofei

Publication type:

Article

Rapid Neural DNA Methylation Responses to Predation Stress in Trinidadian Guppies.

Published in:

Molecular Ecology, 2025, v. 34, n. 10, p. 1, doi. 10.1111/mec.17774

By:

Fox, Janay A.;
Reader, Simon M.;
Barrett, Rowan D. H.

Publication type:

Article

Aaptamine Inhibits Lipid Accumulation and Pparg and Slc2a4 Expression While Maintaining the Methylation of the Pparg Promoter During 3T3-L1 Adipocyte Differentiation.

Published in:

Journal of Experimental Pharmacology, 2025, v. 17, p. 159, doi. 10.2147/JEP.S511866

By:

Ariyanto, Eko Fuji;
Wijaya, Ibnu;
Pradian, Zaky Alif;
Bhaskara, Agung Putri Mayasari;
Lastialno, Mohammad Parezal;
Rahman, Putri Halleyana Adrikni;
Bashari, Muhammad Hasan;
Oktavia, Nandina;
Putra, Muhammad Iman Pratama;
Pratiwi, Yuni Susanti;
Heryaman, Henhen;
Dhianawaty, Diah

Publication type:

Article

Postnatal epigenetic differences in calves following transient fetal infection with bovine viral diarrhea virus.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11562-5

By:

Kincade, Jessica N.;
Engle, Terry E.;
Henao-Tamayo, Marcela;
Eder, Jordan M.;
McDonald, Erin M.;
Deines, Darcy M.;
Wright, Brie M.;
Murtazina, Dilyara;
Bishop, Jeanette V.;
Hansen, Thomas R.;
Van Campen, Hana

Publication type:

Article

Recent advances on gene-related DNA methylation in cancer diagnosis, prognosis, and treatment: a clinical perspective.

Published in:

Clinical Epigenetics, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13148-025-01884-2

By:

Lavoro, Alessandro;
Ricci, Daria;
Gattuso, Giuseppe;
Longo, Federica;
Spoto, Graziana;
Vitale, Anastasia Cristina Venera;
Giuliana, Maria Chiara;
Falzone, Luca;
Libra, Massimo;
Candido, Saverio

Publication type:

Article

DNA methylation in primary myelofibrosis is partly associated with driver mutations and distinct from other myeloid malignancies.

Published in:

Clinical Epigenetics, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13148-025-01877-1

By:

Dursun Torlak, Esra;
Tharmapalan, Vithurithra;
Kricheldorf, Kim;
Schifflers, Joelle;
Caduc, Madeline;
Zenke, Martin;
Koschmieder, Steffen;
Wagner, Wolfgang

Publication type:

Article

A systematic evaluation of cell-type-specific differential methylation analysis in bulk tissue.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf170

By:

Li, Shuo;
Kuan, Pei Fen

Publication type:

Article

MethPriorGCN: a deep learning tool for inferring DNA methylation prior knowledge and guiding personalized medicine.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf131

By:

Ni, Jie;
Li, Bin;
Miao, Shumei;
Zhang, Xinting;
Yan, Donghui;
Jing, Shengqi;
Lu, Shan;
Xie, Zhuoying;
Zhang, Xin;
Liu, Yun

Publication type:

Article

Predicting differentially methylated cytosines in TET and DNMT3 knockout mutants via a large language model.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf092

By:

Sereshki, Saleh;
Lonardi, Stefano

Publication type:

Article

DNA methylation identifies body segment origins of spinal ependymomas.

Published in:

2025

By:

Yamazawa, Erika;
Tanaka, Shota;
Nagae, Genta;
Umeda, Takayoshi;
Tatsuno, Kenji;
Hana, Taijun;
Kim, Phyo;
Takami, Toshihiro;
Takai, Keisuke;
Komori, Takashi;
Otani, Ryohei;
Higuchi, Fumi;
Takami, Hirokazu;
Yamada, Keisuke;
Nomura, Masashi;
Mukasa, Akitake;
Takayanagi, Shunsaku;
Imai, Hideaki;
Aburatani, Hiroyuki;
Saito, Nobuhito

Publication type:

Letter

Genomics, Transcriptomics, and Epigenomics in Traumatic Brain Injury Research.

Published in:

Annual Review of Nursing Research, 2015, v. 33, p. 75, doi. 10.1891/0739-6686.33.75

By:

Puccio, Ava M.;
Alexander, Sheila

Publication type:

Article

Epigenetic Implications of Neighborhood Disorder and Psychological Distress among Pregnant Black Women.

Published in:

Western Journal of Nursing Research, 2023, v. 45, n. 9, p. 780, doi. 10.1177/01939459231184713

By:

Nowak, Alexandra L.;
Anderson, Cindy M.;
Zhao, Yihong;
Ford, Jodi L.;
Mackos, Amy R.;
Ohm, Joyce;
Tan, Alai;
Saadat, Nadia;
Misra, Dawn P.;
Giurgescu, Carmen

Publication type:

Article

Epigenetic profiling of synchronous colorectal neoplasias by quantitative DNA methylation analysis.

Published in:

2006

By:

Ogino, Shuji;
Brahmandam, Mohan;
Kawasaki, Takako;
Kirkner, Gregory J.;
Loda, Massimo;
Fuchs, Charles S.

Publication type:

journal article

Methylation of p14(ARF) gene in meningiomas and its correlation to the p53 expression and mutation.

Published in:

2004

By:

Amatya, Vishwa Jeet;
Takeshima, Yukio;
Inai, Kouki

Publication type:

journal article

The proportion of endometrial tumours associated with Lynch syndrome (PETALS): A prospective cross-sectional study.

Published in:

2020

By:

Ryan, Neil A. J.;
McMahon, Raymond;
Tobi, Simon;
Snowsill, Tristan;
Esquibel, Shona;
Wallace, Andrew J.;
Bunstone, Sancha;
Bowers, Naomi;
Mosneag, Ioana E.;
Kitson, Sarah J.;
O'Flynn, Helena;
Ramchander, Neal C.;
Sivalingam, Vanitha N.;
Frayling, Ian M.;
Bolton, James;
McVey, Rhona J.;
Evans, D. Gareth;
Crosbie, Emma J.

Publication type:

journal article

Genomic Imprinting of <i>Grb10</i> : Coadaptation or Conflict?

Published in:

PLoS Biology, 2014, v. 12, n. 2, p. 1, doi. 10.1371/journal.pbio.1001800

By:

Wilkins, Jon F.

Publication type:

Article

Localized DNA Demethylation at Recombination Intermediates during Immunoglobulin Heavy Chain Gene Assembly.

Published in:

PLoS Biology, 2013, v. 11, n. 1, p. 1, doi. 10.1371/journal.pbio.1001475

By:

Selimyan, Roza;
Gerstein, Rachel M.;
Ivanova, Irina;
Precht, Patricia;
Subrahmanyam, Ramesh;
Perlot, Thomas;
Alt, Frederick W.;
Sen, Ranjan

Publication type:

Article

SCD1 methylation in subcutaneous adipose tissue associated with menopausal age.

Published in:

2019

By:

Lu, S.;
Xu, F.;
Hu, W.;
Niu, Z.;
Cai, H.;
Chen, Y.;
Tu, Q.;
Zhang, Y.;
Chen, W.;
Liu, W.;
Tang, S.;
Zhang, Z.

Publication type:

journal article

Association of multiple candidate genes with mild cognitive impairment in an elderly Chinese Uygur population in Xinjiang.

Published in:

Psychogeriatrics, 2019, v. 19, n. 6, p. 574, doi. 10.1111/psyg.12440

By:

Zou, Ting;
Chen, Wei;
Zhou, Xiaohui;
Duan, Yali;
Ying, Xiuru;
Liu, Guili;
Zhu, Meisheng;
Pari, Abuliz;
Alimu, Kader;
Miao, Haijun;
Kabinur, Keyim;
Zhang, Lei;
Wang, Qinwen;
Duan, Shiwei

Publication type:

Article

Abnormal Weakening of DNA Methylation around the SLC6A1 Gene Promoter in Temporal Lobe Epilepsy.

Published in:

Journal of Integrative Neuroscience, 2024, v. 23, n. 9, p. 1, doi. 10.31083/j.jin2309181

By:

Hua Tao;
Zhengjuan Wu;
Yang Liu;
Xiaolu Zhang;
Keshen Li;
Xu Zhou

Publication type:

Article

TET3-mediated accumulation of DNA hydroxymethylation contributes to the activity-dependent gene expression of Rab3a in post-mitotic neurons.

Published in:

Journal of Integrative Neuroscience, 2021, v. 20, n. 3, p. 529, doi. 10.31083/j.jin2003057

By:

Kun Luo;
Lesheng Wang;
Yulong Shen;
Shuhua She;
Yong Cui;
Kui Liu

Publication type:

Article

PCA-constrained multi-core matrix fusion network: A novel approach for cancer subtype identification.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 4, p. 1, doi. 10.1142/S0219720024500148

By:

Li, Min;
Qi, Zhifang;
Liu, Liang;
Lou, Mingzhu;
Deng, Shaobo

Publication type:

Article

Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1142/S0219720023500208

By:

Hu, Fuyan;
Chen, Bifeng;
Wang, Qing;
Yang, Zhiyuan;
Chu, Man

Publication type:

Article

PESM: A novel approach of tumor purity estimation based on sample specific methylation sites.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 5, p. N.PAG, doi. 10.1142/S0219720020500274

By:

Pang, Shanchen;
Wang, Lihua;
Wang, Shudong;
Zhang, Yuanyuan;
Wang, Xinzeng

Publication type:

Article

Cloud-BS: A MapReduce-based bisulfite sequencing aligner on cloud.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 6, p. N.PAG, doi. 10.1142/S0219720018400280

By:

Choi, Joungmin;
Park, Yoonjae;
Kim, Sun;
Chae, Heejoon

Publication type:

Article

New variable selection strategy for analysis of high-dimensional DNA methylation data.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 4, p. N.PAG, doi. 10.1142/S0219720018500105

By:

Choi, Jiyun;
Kim, Kipoong;
Sun, Hokeun

Publication type:

Article

Universal informative CpG sites for inferring tumor purity from DNA methylation microarray data.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 3, p. N.PAG, doi. 10.1142/S0219720017500305

By:

Dou, Haixia;
Fang, Yun;
Zheng, Xiaoqi

Publication type:

Article

Integrative analysis of gene expression and DNA methylation using unsupervised feature extraction for detecting candidate cancer biomarkers.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 2, p. -1, doi. 10.1142/S0219720018500063

By:

Moon, Myungjin;
Nakai, Kenta

Publication type:

Article

Restriction-Modification systems interplay causes avoidance of GATC site in prokaryotic genomes.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410031

By:

Ershova, Anna;
Rusinov, Ivan;
Vasiliev, Mikhail;
Spirin, Sergey;
Karyagina, Anna

Publication type:

Article

AKSmooth: Enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 6, p. -1, doi. 10.1142/S0219720014420050

By:

Chen, Junfang;
Lutsik, Pavlo;
Akulenko, Ruslan;
Walter, Jörn;
Helms, Volkhard

Publication type:

Article

A VARIATIONAL BAYES BETA MIXTURE MODEL FOR FEATURE SELECTION IN DNA METHYLATION STUDIES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 4, p. -1, doi. 10.1142/S0219720013500054

By:

MA, ZHANYU;
TESCHENDORFF, ANDREW E.

Publication type:

Article

GENOME-WIDE ANALYSIS AND MODELING OF DNA METHYLATION SUSCEPTIBILITY IN 30 BREAST CANCER CELL LINES BY USING CpG FLANKING SEQUENCES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 3, p. 1, doi. 10.1142/S0219720013410035

By:

JAEHYUN AN;
KWANGSOO KIM;
SUNG-MIN RHEE;
HEEJOON CHAE;
NEPHEW, KENNETH P.;
SUN KIM

Publication type:

Article

Genomic Imprinting - der Kampf der Geschlechter auf molekularer Ebene.

Published in:

Angewandte Chemie, 2013, v. 125, n. 51, p. 13766, doi. 10.1002/ange.201307005

By:

Jurkowska, Renata Z.;
Jeltsch, Albert

Publication type:

Article

Salt tolerance and alterations in cytosine methylation in the interspecific hybrids of Fraxinus velutina and Fraxinus mandshurica.

Published in:

Euphytica, 2015, v. 205, n. 3, p. 721, doi. 10.1007/s10681-015-1432-1

By:

Zeng, Fan-Suo;
Li, Lei-Lei;
Liang, Nan-Song;
Wang, Xuan;
Li, Xiang;
Zhan, Ya-Guang

Publication type:

Article

Level and pattern of DNA methylation changes in rice cold tolerance introgression lines derived from Oryza rufipogon Griff.

Published in:

Euphytica, 2015, v. 205, n. 1, p. 73, doi. 10.1007/s10681-015-1389-0

By:

Dai, Liang-Fang;
Chen, Ya-Ling;
Luo, Xiang-Dong;
Wen, Xiu-Fang;
Cui, Feng-Lei;
Zhang, Fan-Tao;
Zhou, Yi;
Xie, Jian-Kun

Publication type:

Article

Variation of DNA methylation and phenotypic traits following unilateral sexual polyploidization in Medicago.

Published in:

Euphytica, 2012, v. 186, n. 3, p. 731, doi. 10.1007/s10681-011-0571-2

By:

Aversano, Riccardo;
Capomaccio, Stefano;
Carputo, Domenico;
Veronesi, Fabio;
Rosellini, Daniele

Publication type:

Article

Comparison of MdMYB1 sequences and expression of anthocyanin biosynthetic and regulatory genes between Malus domestica Borkh . cultivar 'Ralls' and its blushed sport.

Published in:

Euphytica, 2012, v. 185, n. 2, p. 157, doi. 10.1007/s10681-011-0494-y

By:

Xu, Yuting;
Feng, Shouqian;
Jiao, Qiqing;
Liu, Chaochao;
Zhang, Weiwei;
Chen, Weiyi;
Chen, Xuesen

Publication type:

Article

Gene chip analysis of Arabidopsis thaliana genomic DNA methylation and gene expression in response to carbendazim.

Published in:

Biotechnology Letters, 2015, v. 37, n. 6, p. 1297, doi. 10.1007/s10529-015-1789-1

By:

Li, Zhongai;
Wang, Zicheng;
Li, Suoping

Publication type:

Article

Genomic imprinting analysis of Igf2/H19 in porcine cloned fetuses using parthenogenetic somatic cells as nuclear donors.

Published in:

Biotechnology Letters, 2014, v. 36, n. 10, p. 1945, doi. 10.1007/s10529-014-1572-8

By:

Wang, Dongxu;
Song, Yuning;
Huang, Yongye;
Duan, Feifei;
Lv, Qinyan;
Ouyang, Hongsheng;
Lai, Liangxue;
Li, Zhanjun

Publication type:

Article

Decreased expression of the DBC2 gene and its clinicopathological significance in breast cancer: correlation with aberrant DNA methylation.

Published in:

Biotechnology Letters, 2013, v. 35, n. 8, p. 1175, doi. 10.1007/s10529-013-1190-x

By:

Han, Linlin;
Hou, Lin;
Song, Jinlian;
Lin, Dongliang;
Wu, Li;
Ge, Yinlin;
Ma, Zhongliang

Publication type:

Article

Nicotinamide-N-Methyltransferase gene rs694539 variant and migraine risk.

Published in:

Journal of Headache & Pain, 2016, v. 17, n. 1, p. 1, doi. 10.1186/s10194-016-0688-8

By:

Sazci, Ali;
Sazci, Gensay;
Sazci, Bilgen;
Ergul, Emel;
Idrisoglu, Halil

Publication type:

Article