Works about COMPARATIVE genomics

Results: 4403

Diverging repeatomes in holoparasitic Hydnoraceae uncover a playground of genome evolution.

Published in:

New Phytologist, 2025, v. 247, n. 3, p. 1520, doi. 10.1111/nph.70280

By:

Kim, Woorin;
Schmidt, Nicola;
Jost, Matthias;
Mkala, Elijah Mbandi;
Winkler, Sylke;
Hu, Guangwan;
Heitkam, Tony;
Wanke, Stefan

Publication type:

Article

The Hedyotis diffusa chromosome-level genome and multi-omics analysis provide new insights into the iridoids biosynthetic pathway.

Published in:

Frontiers in Plant Science, 2025, p. 1, doi. 10.3389/fpls.2025.1607226

By:

Chen, Pengyu;
Huang, Zhuang;
Yin, Mingzhu;
Wen, Yu-xin;
Jiang, Qi;
Huang, Ping;
Qian, Rui;
Hong, Xing;
Zhu, Kaojiang;
Xiao, Benjiang;
Chen, Meng;
Li, Shihao;
Huang, Fang;
Han, Lin-tao

Publication type:

Article

Multiple genome analysis of Staphylococcus aureus from wild ungulates renders new insights into the links between genetic diversity and biofilm formation.

Published in:

Journal of Applied Microbiology, 2025, v. 136, n. 6, p. 1, doi. 10.1093/jambio/lxaf126

By:

Teixeira, Sara;
Ramos, Beatriz;
Cunha, Mónica V

Publication type:

Article

Complete chloroplast genomes of 25 mulberry plants: insight into genome characteristics, comparative analysis and phylogenetic relationships.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11823-3

By:

Yang, Jinhong;
Jiang, Wei;
Huang, Jiayue;
Peng, Yunwu;
Yang, Fang;
Kong, Weiqing

Publication type:

Article

Genomic and functional insights into commensal streptococci with anti-pneumococcal activity.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11756-x

By:

Handem, Sara;
Ferreira, Bárbara;
Valente, Carina;
Sá-Leão, Raquel

Publication type:

Article

GBRAP: A Comprehensive Database and Tool for Exploring Genomic Diversity Across All Domains of Life Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 6, p. 1, doi. 10.1093/molbev/msaf114

By:

Yaddehige, Sachithra Kalhari;
Vischioni, Chiara;
Berselli, Michele;
Alberghini, Leonardo;
Mezzavilla, Massimo;
Bobbo, Tania;
Taccioli, Cristian

Publication type:

Article

Genetic Analysis of Lodging Resistance in 1892S Based on the T2T Genome: Providing a Genetic Approach for the Improvement of Two-Line Hybrid Rice Varieties.

Published in:

Plants (2223-7747), 2025, v. 14, n. 12, p. 1873, doi. 10.3390/plants14121873

By:

Zhang, Wei;
Zhou, Liang;
Ni, Dahu;
Ni, Jinlong;
Song, Fengshun;
Yang, Liansong;
Zhang, Dewen

Publication type:

Article

Genomic Insights into the Pathogenicity of Hypervirulent Aeromonas hydrophila Strain D4 Isolated from Diseased Blunt Snout Bream with the Epidemic Sequence Type 251 Clones.

Published in:

Pathogens, 2025, v. 14, n. 6, p. 570, doi. 10.3390/pathogens14060570

By:

Xu, Li;
Kang, Xingyu;
Wang, Zhicheng;
Xiao, Zuyuan;
Luo, Yi

Publication type:

Article

Genome Sequences of the First Phages Infecting Limnohabitans Reveal Their Global Distribution and Metabolic Potential.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1324, doi. 10.3390/microorganisms13061324

By:

Deng, Boxuan;
Che, Raoqiong;
Zhu, Pinxin;
Wang, Yongxia;
Li, Zhiying;
Zhang, Shiying;
Xiao, Wei

Publication type:

Article

Comparative Genomics of Sigma Factors in Acidithiobacillia Sheds Light into the Transcriptional Regulatory Networks Involved in Biogeochemical Dynamics in Extreme Acidic Environments.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1199, doi. 10.3390/microorganisms13061199

By:

Sepúlveda-Rebolledo, Pedro;
González-Rosales, Carolina;
Dopson, Mark;
Pérez-Rueda, Ernesto;
Holmes, David S.;
Valdés, Jorge H.

Publication type:

Article

Cornified Epithelial Teeth of Jawless Vertebrates Contain Proteins Similar to Keratin-Associated Proteins of Mammalian Skin Appendages.

Published in:

Journal of Developmental Biology, 2025, v. 13, n. 2, p. 18, doi. 10.3390/jdb13020018

By:

Sachslehner, Attila Placido;
Parry, David A. D.;
Eckhart, Leopold

Publication type:

Article

Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 6, p. 1, doi. 10.1093/gbe/evaf091

By:

Hoh, Celine;
Salzberg, Steven L

Publication type:

Article

Mitochondrial genome characterization, evolution and intron dynamics of the entomopathogenic genus Cordyceps.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1605218

By:

Jia, Jinlong;
Li, Chengpeng;
Tang, Mei;
Liao, Hefa;
Yang, Zhuliang;
Wang, Yanan;
Li, Ming;
Zeng, Wenbo;
Wang, Yuanbing

Publication type:

Article

Mitochondrial Genome Variations and Possible Adaptive Implications in Some Tephritid Flies (Diptera, Tephritidae).

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5560, doi. 10.3390/ijms26125560

By:

Medina, Natalia S.;
Moreno-Carmona, Manuela;
Canal, Nelson A.;
Prada-Quiroga, Carlos F.

Publication type:

Article

Genomic Analysis Reveals the Fast-Growing Trait and Improvement Potential for Stress Resistance in the Elite Poplar Variety Populus × euramericana 'Bofeng 3'.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5526, doi. 10.3390/ijms26125526

By:

Zhong, Shanchen;
Zhang, Weixi;
Ding, Changjun;
Yuan, Zhengsai;
Shen, Le;
Zhang, Bingyu;
Chu, Yanguang;
Su, Xiaohua

Publication type:

Article

Whole genome-based reclassification of several species of the genus Nonomuraea.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0327003

By:

Bouras, Noureddine;
Nouioui, Imen;
Dif, Guendouz;
Chaouch, Fawzia Chaabane;
Ebada, Sherif S.

Publication type:

Article

Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030015

By:

Fouts, Derrick E;
Mongodin, Emmanuel F;
Mandrell, Robert E;
Miller, William G;
Rasko, David A;
Ravel, Jacques;
Brinkac, Lauren M;
DeBoy, Robert T;
Parker, Craig T;
Daugherty, Sean C;
Dodson, Robert J;
Durkin, A. Scott;
Madupu, Ramana;
Sullivan, Steven A;
Shetty, Jyoti U;
Ayodeji, Mobolanle A;
Shvartsbeyn, Alla;
Schatz, Michael C;
Badger, Jonathan H;
Fraser, Claire M

Publication type:

Article

Sorghum Genome Sequencing by Methylation Filtration.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030013

By:

Bedell, Joseph A;
Budiman, Muhammad A;
Nunberg, Andrew;
Citek, Robert W;
Robbins, Dan;
Jones, Joshua;
Flick, Elizabeth;
Rohlfing, Theresa;
Fries, Jason;
Bradford, Kourtney;
McMenamy, Jennifer;
Smith, Michael;
Holeman, Heather;
Roe, Bruce A;
Wiley, Graham;
Korf, Ian F;
Rabinowicz, Pablo D;
Lakey, Nathan;
McCombie, W. Richard;
Jeddeloh, Jeffrey A

Publication type:

Article

A Model of the Statistical Power of Comparative Genome Sequence Analysis.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030010

By:

Eddy, Sean R

Publication type:

Article

Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development.

Published in:

PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0030007

By:

Woolfe, Adam;
Goodson, Martin;
Goode, Debbie K;
Snell, Phil;
McEwen, Gayle K;
Vavouri, Tanya;
Smith, Sarah F;
North, Phil;
Callaway, Heather;
Kelly, Krys;
Walter, Klaudia;
Abnizova, Irina;
Gilks, Walter;
Edwards, Yvonne J. K;
Cooke, Julie E;
Elgar, Greg

Publication type:

Article

Lineage-Specific Gene Duplication and Loss in Human and Great Ape Evolution.

Published in:

PLoS Biology, 2004, v. 2, n. 7, p. 1, doi. 10.1371/journal.pbio.0020207

By:

Fortna, Andrew;
Kim, Young;
MacLaren, Erik;
Marshall, Kriste;
Hahn, Gretchen;
Meltesen, Lynne;
Brenton, Matthew;
Hink, Raquel;
Burgers, Sonya;
Hernandez-Boussard, Tina;
Karimpour-Fard, Anis;
Glueck, Deborah;
McGavran, Loris;
Berry, Rebecca;
Pollack, Jonathan;
Sikela, James M

Publication type:

Article

Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements.

Published in:

PLoS Biology, 2004, v. 2, n. 3, p. 1, doi. 10.1371/journal.pbio.0020069

By:

Wu, Martin;
Sun, Ling V;
Vamathevan, Jessica;
Riegler, Markus;
Deboy, Robert;
Brownlie, Jeremy C;
McGraw, Elizabeth A;
Martin, William;
Esser, Christian;
Ahmadinejad, Nahal;
Wiegand, Christian;
Madupu, Ramana;
Beanan, Maureen J;
Brinkac, Lauren M;
Daugherty, Sean C;
Durkin, A. Scott;
Kolonay, James F;
Nelson, William C;
Mohamoud, Yasmin;
Lee, Perris

Publication type:

Article

Similarities and Differences in Genome-Wide Expression Data of Six Organisms.

Published in:

PLoS Biology, 2003, v. 1, n. 12, p. 1, doi. 10.1371/journal.pbio.0020009

By:

Bergmann, Sven;
Ihmels, Jan;
Barkai, Naama

Publication type:

Article

Comparative Genomics.

Published in:

PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000058

By:

Hardison, Ross C

Publication type:

Article

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.

Published in:

PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000045

By:

Stein, Lincoln D;
Bao, Zhirong;
Blasiar, Darin;
Blumenthal, Thomas;
Brent, Michael R;
Chen, Nansheng;
Chinwalla, Asif;
Clarke, Laura;
Clee, Chris;
Coghlan, Avril;
Coulson, Alan;
D'Eustachio, Peter;
Fitch, David H. A;
Fulton, Lucinda A;
Fulton, Robert E;
Griffiths-Jones, Sam;
Harris, Todd W;
Hillier, LaDeana W;
Kamath, Ravi;
Kuwabara, Patricia E

Publication type:

Article

Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives.

Published in:

Photosynthesis Research, 2014, v. 122, n. 2, p. 171, doi. 10.1007/s11120-014-0020-x

By:

Howard-Azzeh, Mohammad;
Shamseer, Larissa;
Schellhorn, Herb;
Gupta, Radhey

Publication type:

Article

The GreenCut: re-evaluation of physiological role of previously studied proteins and potential novel protein functions.

Published in:

Photosynthesis Research, 2013, v. 116, n. 2/3, p. 427, doi. 10.1007/s11120-013-9882-6

By:

Heinnickel, Mark;
Grossman, Arthur

Publication type:

Article

Comparative Genomics and Molecular Analysis of Epidermophyton floccosum.

Published in:

Mycopathologia, 2021, v. 186, n. 4, p. 487, doi. 10.1007/s11046-021-00567-9

By:

Liu, Jia;
Ge, Liyu;
Mei, Huan;
Zheng, Hailin;
Peng, Jingwen;
Liang, Guanzhao;
Liu, Weida

Publication type:

Article

Complete Genome Sequence of Penicillium oxalicum Strain SGAir0226 Isolated from Outdoor Tropical Air in Singapore.

Published in:

Mycopathologia, 2020, v. 185, n. 3, p. 591, doi. 10.1007/s11046-019-00422-y

By:

Gupta, Anjali Bansal;
Gaultier, Nicolas E.;
Aung, Ngu War;
Purbojati, Rikky W.;
Oliveira, Elaine L.;
Wong, Anthony;
Panicker, Deepa;
Putra, Alexander;
Uchida, Akira;
Drautz-Moses, Daniela I.;
Schuster, Stephan C.

Publication type:

Article

Cryptococcus gattii Comparative Genomics and Transcriptomics: A NIH/NIAID White Paper.

Published in:

Mycopathologia, 2012, v. 173, n. 5/6, p. 367, doi. 10.1007/s11046-011-9512-9

By:

Chaturvedi, V.;
Nierman, W.

Publication type:

Article

Molecular cytogenetic map of the central bearded dragon, Pogona vitticeps (Squamata: Agamidae).

Published in:

Chromosome Research, 2013, v. 21, n. 4, p. 361, doi. 10.1007/s10577-013-9362-z

By:

Young, M.;
O'Meally, D.;
Sarre, S.;
Georges, A.;
Ezaz, T.

Publication type:

Article

A ZZ/ZW microchromosome system in the spiny softshell turtle, Apalone spinifera, reveals an intriguing sex chromosome conservation in Trionychidae.

Published in:

Chromosome Research, 2013, v. 21, n. 2, p. 137, doi. 10.1007/s10577-013-9343-2

By:

Badenhorst, Daleen;
Stanyon, Roscoe;
Engstrom, Tag;
Valenzuela, Nicole

Publication type:

Article

Breaking resistance: in silico subtractive and comparative genomics approaches for drug targeting in Bacteroides fragilis.

Published in:

Biotechnology Letters, 2024, v. 46, n. 6, p. 1249, doi. 10.1007/s10529-024-03537-5

By:

Zia, Tehreem;
Khan, Kanwal;
Aghayeva, Saltanat;
Uddin, Reaz

Publication type:

Article

Integrated bioinformatics based subtractive genomics approach to decipher the therapeutic function of hypothetical proteins from Salmonella typhi XDR H-58 strain.

Published in:

Biotechnology Letters, 2022, v. 44, n. 2, p. 279, doi. 10.1007/s10529-021-03219-6

By:

Khan, Kanwal;
Uddin, Reaz

Publication type:

Article

Comparative transcriptome analysis of genomic region deletion strain with enhanced l-tyrosine production in Saccharomyces cerevisiae.

Published in:

Biotechnology Letters, 2020, v. 42, n. 3, p. 453, doi. 10.1007/s10529-019-02784-1

By:

Wu, Yuzhen;
Cai, Miao;
Song, Xiaofei;
Li, Yuanzi;
Wang, Hesuiyuan;
Mao, Jiwei;
Liu, Quanli;
Xu, Haijin;
Qiao, Mingqiang

Publication type:

Article

Characterization and organization of telomeric-linked helicase (tlh) gene families in Fusarium oxysporum.

Published in:

Current Genetics, 2024, v. 70, n. 1, p. 1, doi. 10.1007/s00294-024-01303-8

By:

Salimi, Sahar;
Abdi, M. Foad;
Rahnama, Mostafa

Publication type:

Article

Genomic insights into the diversity of non-coding RNAs in Bacillus cereus sensu lato.

Published in:

Current Genetics, 2022, v. 68, n. 3/4, p. 449, doi. 10.1007/s00294-022-01240-4

By:

Gonçalves, Kátia B.;
Appel, Renan J. Casarotto;
Bôas, Laurival A. Vilas;
Cardoso, Priscilla F.;
Bôas, Gislayne T. Vilas

Publication type:

Article

Biological and genomic analyses of a clinical isolate of Yarrowia galli from China.

Published in:

Current Genetics, 2020, v. 66, n. 3, p. 549, doi. 10.1007/s00294-019-01046-x

By:

Bing, Jian;
You, Zimeng;
Zheng, Qiushi;
Tang, Jiaoqing;
Ran, Yuping;
Huang, Guanghua

Publication type:

Article

Comparative genomics of Paracoccus sp. SM22M-07 isolated from coral mucus: insights into bacteria-host interactions.

Published in:

Current Genetics, 2017, v. 63, n. 3, p. 509, doi. 10.1007/s00294-016-0658-3

By:

Carlos, Camila;
Pereira, Letícia;
Ottoboni, Laura

Publication type:

Article

(Actino)Bacterial 'intelligence': using comparative genomics to unravel the information processing capacities of microbes.

Published in:

Current Genetics, 2016, v. 62, n. 3, p. 487, doi. 10.1007/s00294-016-0569-3

By:

Pinto, Daniela;
Mascher, Thorsten

Publication type:

Article

Metabolic pathway of 3,6-anhydro-D-galactose in carrageenan-degrading microorganisms.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 9, p. 4109, doi. 10.1007/s00253-016-7346-6

By:

Lee, Sun;
Kim, Jeong;
Lim, Hyun

Publication type:

Article

Metagenomic analysis of the microbial community in fermented grape marc reveals that Lactobacillus fabifermentans is one of the dominant species: insights into its genome structure.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 13, p. 6015, doi. 10.1007/s00253-014-5795-3

By:

Campanaro, Stefano;
Treu, Laura;
Vendramin, Veronica;
Bovo, Barbara;
Giacomini, Alessio;
Corich, Viviana

Publication type:

Article

Comparative genomic and transcriptomic analyses of NaCl-tolerant Staphylococcus sp. OJ82 isolated from fermented seafood.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 2, p. 807, doi. 10.1007/s00253-013-5436-2

By:

Choi, Sungjong;
Jung, Jaejoon;
Jeon, Che;
Park, Woojun

Publication type:

Article

Characterization of four TCE-dechlorinating microbial enrichments grown with different cobalamin stress and methanogenic conditions.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 14, p. 6439, doi. 10.1007/s00253-013-4896-8

By:

Men, Yujie;
Lee, Patrick;
Harding, Katie;
Alvarez-Cohen, Lisa

Publication type:

Article

An updated view of the oligosaccharyltransferase complex in Plasmodium.

Published in:

Glycobiology, 2019, v. 29, n. 5, p. 385, doi. 10.1093/glycob/cwz011

By:

Tamana, Stella;
Promponas, Vasilis J

Publication type:

Article

Multiomic approaches reveal novel lineage-specific effectors in the potato and tomato early blight pathogen Alternaria solani.

Published in:

Phytopathology Research, 2022, v. 4, n. 1, p. 1, doi. 10.1186/s42483-022-00135-z

By:

Wang, Jinhui;
Xiao, Siyu;
Zheng, Lijia;
Pan, Yang;
Zhao, Dongmei;
Zhang, Dai;
Li, Qian;
Zhu, Jiehua;
Yang, Zhihui

Publication type:

Article

Comparative genomics of Xanthomonas fragariae and Xanthomonas arboricola pv. fragariae reveals intra- and interspecies variations.

Published in:

Phytopathology Research, 2020, v. 2, n. 1, p. 1, doi. 10.1186/s42483-020-00061-y

By:

Gétaz, Michael;
Blom, Jochen;
Smits, Theo H. M.;
Pothier, Joël F.

Publication type:

Article

Author Correction: Comparative genomics reveal a novel phylotaxonomic order in the genus Fusobacterium.

Published in:

2025

By:

Molteni, Cristian;
Forni, Diego;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Correction Notice

Improved production of clavulanic acid by reverse engineering and overexpression of the regulatory genes in an industrial Streptomyces clavuligerus strain.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 8, p. 1205, doi. 10.1007/s10295-019-02196-0

By:

Cho, Hang Soo;
Jo, Jin Chul;
Shin, Chang-Hun;
Lee, Namil;
Choi, Joon-Sun;
Cho, Byung-Kwan;
Roe, Jung-Hye;
Kim, Chan-Wha;
Kwon, Ho Jeong;
Yoon, Yeo Joon

Publication type:

Article

Influence of R and S enantiomers of 1-octen-3-ol on gene expression of Penicillium chrysogenum.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 7, p. 977, doi. 10.1007/s10295-019-02168-4

By:

Yin, Guohua;
Zhang, Yuliang;
Fu, Maojie;
Hua, Sui Sheng T.;
Huang, Qixing;
Pennerman, Kayla K.;
Wu, Guangxi;
Jurick II, Wayne M.;
Lee, Samantha;
Bu, Lijing;
Zhao, Hui;
Bennett, Joan W.

Publication type:

Article