Works matching DE "BIOINFORMATICS"

Results: 5000

PI3K/AKT signaling pathway plays an important role in the pathogenesis of metabolic dysfunction-associated steatotic liver disease.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-07612-3

By:

Shao, Cuiping;
Xu, Youqing

Publication type:

Article

LassoPred: a tool to predict the 3D structure of lasso peptides.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60544-4

By:

Ouyang, Xingyu;
Ran, Xinchun;
Xu, Han;
Al-Abssi, Runeem;
Zhao, Yi-Lei;
Link, A. James;
Yang, Zhongyue J.

Publication type:

Article

Evaluating the Effectiveness of Various Small RNA Alignment Techniques in Transcriptomic Analysis by Examining Different Sources of Variability Through a Multi-Alignment Approach.

Published in:

Methods & Protocols, 2025, v. 8, n. 3, p. 65, doi. 10.3390/mps8030065

By:

Zhao, Xinwei;
Korsching, Eberhard

Publication type:

Article

Exploring the potential anticancer targets and mechanistic pathways of Elsholtzia densa essential oil based on network pharmacology.

Published in:

Journal of Asian Natural Products Research, 2025, v. 27, n. 7, p. 1038, doi. 10.1080/10286020.2024.2446294

By:

Wang, Qian;
Wang, Xiao-Ying;
Tao, Jin;
Nie, Jin-Tao;
Zhou, Yi-Han;
Huang, Jing;
Zhao, Jia-Yuan;
Wang, Ya-Nan

Publication type:

Article

Three new terpenoid derivatives from the deep-sea-derived fungus Aspergillus sydowii DFFSCS007.

Published in:

Journal of Asian Natural Products Research, 2025, v. 27, n. 7, p. 1005, doi. 10.1080/10286020.2024.2443086

By:

Ren, Xu-Meng;
Wu, Ke-Yue;
Qi, Shu-Hua

Publication type:

Article

Applications and Prospects of Single‐Cell RNA Sequencing and Spatial Transcriptomics in Cervical Cancer.

Published in:

BioMed Research International, 2025, v. 2025, p. 1, doi. 10.1155/bmri/1532745

By:

Wang, Yifu;
Yang, Li;
Liu, Yunzhi;
Ma, Huangrong;
Cai, Miaoying;
Liang, Chunyu;
Zhang, Li;
Su, Zezhuo;
Xu, Zhiyuan;
Lopez-Camarillo, Cesar

Publication type:

Article

Validation of Biomarkers and Immunotherapy With Crohn's Disease Using WGCNA and Two‐Sample Mendelian Randomization Study.

Published in:

Gastroenterology Research & Practice, 2025, v. 2025, p. 1, doi. 10.1155/grp/8194480

By:

Hu, Cong;
Nong, Shuxiong;
Liu, Chenang;
Chen, Yongfeng;
Liao, Chilin;
Wu, Meng;
Toyokawa, Tatsuya

Publication type:

Article

Clinical Connections.

Published in:: Arthritis & Rheumatology, 2025, v. 77, n. 7, p. 1, doi. 10.1002/art.43282
Publication type:: Article

Genome‐Wide Aggregated Trans Effects Analysis Identifies Genes Encoding Immune Checkpoints as Core Genes for Rheumatoid Arthritis.

Published in:

Arthritis & Rheumatology, 2025, v. 77, n. 7, p. 817, doi. 10.1002/art.43125

By:

Spiliopoulou, Athina;
Iakovliev, Andrii;
Plant, Darren;
Sutcliffe, Megan;
Sharma, Seema;
Cubuk, Cankut;
Lewis, Myles;
Pitzalis, Costantino;
Barton, Anne;
McKeigue, Paul M.

Publication type:

Article

Unraveling the Mechanisms of Active Saponins from Rhizoma Anemarrhenae Against Ferroptosis in Alzheimer's Disease: Integrating Network Pharmacology, Cell Membrane Chromatography, and Experimental Validation.

Published in:

American Journal of Chinese Medicine, 2025, v. 53, n. 4, p. 1119, doi. 10.1142/S0192415X25500429

By:

Peng, Jing;
Lu, Zhongjiao;
Sai, Fangfang;
Min, Liang;
Zhang, Xu;
Ru, Dan;
Song, Yaying;
Wei, Xin;
Gao, Li;
Wang, Hai-Qiao

Publication type:

Article

Identifying CDCA4 as a Radiotherapy Resistance-Associated Gene in Colorectal Cancer by an Integrated Bioinformatics Analysis Approach.

Published in:

Genes, 2025, v. 16, n. 6, p. 696, doi. 10.3390/genes16060696

By:

Chen, Lin;
Gao, Yawei;
Hu, Zhiqing;
Si, Jingwen;
Zhang, Yuchao;
Cai, Qingping

Publication type:

Article

Gene Expression Profiling in Rat Tissues of Different Status of Insulin Sensitivity.

Published in:: Journal of Systems Science & Information, 2011, v. 9, n. 1, p. 79
Publication type:: Article

Potential therapeutic significance of resveratrol for autism spectrum disorders based on clinical bioinformatics.

Published in:

Chinese Nursing Research, 2024, v. 38, n. 21, p. 3768, doi. 10.12102/j.issn.1009-6493.2024.21.002

By:

LYU Yanhua;
ZHONG Xiaoyun;
WANG Kanglong;
ZHAO Hongxia;
YU Qi

Publication type:

Article

Informare! Der Weg zum WISSEN. Digital!

Published in:: ABI Technik, 2011, v. 31, n. 1, p. 1
Publication type:: Article

Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 11, p. 707, doi. 10.1038/nrmicro3568

By:

Ling, Jiqiang;
O'Donoghue, Patrick;
Söll, Dieter

Publication type:

Article

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 7, p. 497, doi. 10.1038/nrmicro3050

By:

Kaoutari, Abdessamad El;
Armougom, Fabrice;
Gordon, Jeffrey I.;
Raoult, Didier;
Henrissat, Bernard

Publication type:

Article

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 5, p. 349, doi. 10.1038/nrmicro3007

By:

Dorman, Charles J.

Publication type:

Article

Genomic sequencing of uncultured microorganisms from single cells.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 9, p. 631, doi. 10.1038/nrmicro2857

By:

Lasken, Roger S.

Publication type:

Article

Next-generation training.

Published in:: Nature Reviews Microbiology, 2012, v. 10, n. 7, p. 439, doi. 10.1038/nrmicro2830
Publication type:: Article

Bacterial toxins: The touch of death.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 1, p. 3, doi. 10.1038/nrmicro2495

By:

Jermy, Andrew

Publication type:

Article

Genome annotation: man versus machine.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 11, p. 762, doi. 10.1038/nrmicro2462

By:

Petty, Nicola K.

Publication type:

Article

Detecting genomic islands using bioinformatics approaches.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 5, p. 373, doi. 10.1038/nrmicro2350

By:

Langille, Morgan G. I.;
Hsiao, William W. L.;
Brinkman, Fiona S. L.

Publication type:

Article

How Much Does It Cost? Optimization of Costs in Sequence Analysis of Social Science Data.

Published in:

Sociological Methods & Research, 2009, v. 38, n. 1, p. 197, doi. 10.1177/0049124109342065

By:

Gauthier, Jacques-Antoine;
Widmer, Eric D.;
Bucher, Philipp;
Notredame, Cédric

Publication type:

Article

The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology.

Published in:

PLoS Biology, 2015, v. 13, n. 5, p. 1, doi. 10.1371/journal.pbio.1002140

By:

Goodsell, David S.;
Dutta, Shuchismita;
Zardecki, Christine;
Voigt, Maria;
Berman, Helen M.;
Burley, Stephen K.

Publication type:

Article

Barcoding Life's Matrix: Translating Biodiversity Genomics into High School Settings to Enhance Life Science Education.

Published in:

PLoS Biology, 2013, v. 11, n. 1, p. 1, doi. 10.1371/journal.pbio.1001471

By:

Santschi, Linda;
Hanner, Robert H.;
Ratnasingham, Sujeevan;
Riconscente, Michelle;
Imondi, Ralph

Publication type:

Article

A Holistic Approach to Marine Eco-Systems Biology.

Published in:

PLoS Biology, 2011, v. 9, n. 10, p. 1, doi. 10.1371/journal.pbio.1001177

By:

Karsenti, Eric;
Acinas, Silvia G.;
Bork, Peer;
Bowler, Chris;
De Vargas, Colomban;
Raes, Jeroen;
Sullivan, Matthew;
Arendt, Detlev;
Benzoni, Francesca;
Claverie, Jean-Michel;
Follows, Mick;
Gorsky, Gaby;
Hingamp, Pascal;
Iudicone, Daniele;
Jaillon, Olivier;
Kandels-Lewis, Stefanie;
Krzic, Uros;
Not, Fabrice;
Ogata, Hiroyuki;
Pesant, Stéphane

Publication type:

Article

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough.

Published in:

2011

By:

Philippe, Hervé;
Brinkmann, Henner;
Lavrov, Dennis V.;
Littlewood, D. Timothy J.;
Manuel, Michael;
Wörheide, Gert;
Baurain, Denis

Publication type:

Opinion

Incorporating Genomics and Bioinformatics across the Life Sciences Curriculum.

Published in:

PLoS Biology, 2010, v. 8, n. 8, p. 1, doi. 10.1371/journal.pbio.1000448

By:

Ditty, Jayna L.;
Kvaal, Christopher A.;
Goodner, Brad;
Freyermuth, Sharyn K.;
Bailey, Cheryl;
Britton, Robert A.;
Gordon, Stuart G.;
Heinhorst, Sabine;
Reed, Kelynne;
Zhaohui Xu;
Sanders-Lorenz, Erin R.;
Axen, Seth;
Kim, Edwin;
Johns, Mitrick;
Scott, Kathleen;
Kerfeld, Cheryl A.

Publication type:

Article

Mechanisms Used for Genomic Proliferation by Thermophilic Group II Introns.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000391

By:

Mohr, Georg;
Ghanem, Eman;
Lambowitz, Alan M.

Publication type:

Article

Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway.

Published in:

PLoS Biology, 2009, v. 7, n. 8, p. 1, doi. 10.1371/journal.pbio.1000171

By:

Løvdok, Linda;
Bentele, Kajetan;
Vladimirov, Nikita;
Müller, Anette;
Pop, Ferencz S.;
Lebiedz, Dirk;
Kollmann, Markus;
Sourjik, Victor

Publication type:

Article

Metagenome Annotation Using a Distributed Grid of Undergraduate Students.

Published in:

PLoS Biology, 2008, v. 6, n. 11, p. e296, doi. 10.1371/journal.pbio.0060296

By:

Hingamp, Pascal;
Brochier, Cline;
Talla, Emmanuel;
Gautheret, Daniel;
Thieffry, Denis;
Herrmann, Carl

Publication type:

Article

Stem Cells Have Different Needs for REST.

Published in:

PLoS Biology, 2008, v. 6, n. 10, p. 2094, doi. 10.1371/journal.pbio.0060271

By:

Hermanson, Ola

Publication type:

Article

Interesting Structures: Education and Outreach at the RCSB Protein Data Bank.

Published in:

PLoS Biology, 2008, v. 6, n. 5, p. e117, doi. 10.1371/journal.pbio.0060117

By:

Zardecki, Christine

Publication type:

Article

Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles.

Published in:

PLoS Biology, 2007, v. 5, n. 1, p. 54, doi. 10.1371/journal.pbio.0050008

By:

Faith, Jeremiah J.;
Hayete, Boris;
Thaden, Joshua T.;
Mogno, Ilaria;
Wierzbowski, Jamey;
Cottarel, Guillaume;
Kasif, Simon;
Collins, James J.;
Gardner, Timothy S.

Publication type:

Article

Alternative 3' Pre-mRNA Processing in Saccharomyces cerevisiae Is Modulated by Nab4/Hrp1 In Vivo.

Published in:

PLoS Biology, 2007, v. 5, n. 1, p. 15, doi. 10.1371/journal.pbio.0050006

By:

Kim Guisbert, Karen S.;
Hao Li;
Guthrie, Christine

Publication type:

Article

Evolution, Interactions, and Biological Networks.

Published in:

PLoS Biology, 2007, v. 5, n. 1, p. 10, doi. 10.1371/journal.pbio.0050011

By:

Weitz, Joshua S.;
Benfey, Philip N.;
Wingreen, Ned S.

Publication type:

Article

Ablation of PGC-1β Results in Defective Mitochondrial Activity, Thermogenesis, Hepatic Function, and Cardiac Performance.

Published in:

PLoS Biology, 2006, v. 4, n. 11, p. 2042, doi. 10.1371/journal.pbio.0040369

By:

Lelliott, Christopher J.;
Medina-Gomez, Gema;
Petrovic, Natasa;
Kis, Adrienn;
Feldmann, Helena M.;
Bjursell, Mikael;
Parker, Nadeene;
Curtis, Keira;
Campbell, Mark;
Ping Hu;
Dongfang Zhang;
Litwin, Sheldon E.;
Zaha, Vlad G.;
Fountain, Kimberly T.;
Boudina, Sihem;
Jimenez-Linan, Mercedes;
Blount, Margaret;
Lopez, Miguel;
Meirhaeghe, Aline;
Bohlooly-Y., Mohammad

Publication type:

Article

Bioinformatics and Data Management Support for Environmental Genomics.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030297

By:

Field, Dawn;
Tiwari, Bela;
Snape, Jason

Publication type:

Article

Bioinformatics and Data Management Support for Environmental Genomics.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1352, doi. 10.1371/journal.pbio.0030297

By:

Field, Dawn;
Tiwari, Bela;
Snape, Jason

Publication type:

Article

Regional Societies: Fostering Competitive Research Through Virtual Infrastructures.

Published in:

PLoS Biology, 2004, v. 2, n. 12, p. 1, doi. 10.1371/journal.pbio.0020372

By:

Jennings, Steven F;
Ptitsyn, Andrey A;
Wilkins, Dawn;
Bruhn, Russel E;
Slikker Jr, William;
Wren, Jonathan D

Publication type:

Article

Molecular Signatures of Proliferation and Quiescence in Hematopoietic Stem Cells.

Published in:

PLoS Biology, 2004, v. 2, n. 10, p. 1640, doi. 10.1371/journal.pbio.0020301

By:

Venezia, Teresa A.;
Merchant, Akil A.;
Ramos, Carlos A.;
Whitehouse, Nathan L.;
Young, Andrew S.;
Shaw, Chad A.;
Goodell, Margaret A.

Publication type:

Article

A Calculus of Purpose.

Published in:

PLoS Biology, 2004, v. 2, n. 6, p. 712, doi. 10.1371/journal.pbio.0020164

By:

Lander, Arthur D.

Publication type:

Article

A Truly Broad View of Gene Expression Spotlights Evolution and Diversity.

Published in:: PLoS Biology, 2004, v. 2, n. 1, p. 5
Publication type:: Article

Infusing Bioinformatics and Research-Like Experience into a Molecular Biology Laboratory Course.

Published in:

Bioscene, 2014, v. 40, n. 2, p. 3

By:

Nogaj, Luiza A.

Publication type:

Article

Analyzing Population Genetics Using the Mitochondrial Control Region and Bioinformatics.

Published in:

Bioscene, 2010, v. 36, n. 1, p. 26

By:

Sato, Takumi;
Phillips, Bonnie;
Latourelle, Sandra M.;
Elwess, Nancy L.

Publication type:

Article

"Extreme Programming" in a Bioinformatics Class.

Published in:

Bioscene, 2009, v. 35, n. 1, p. 58

By:

Kelley, Scott;
Alger, Christianna;
Deutschman, Douglas

Publication type:

Article

Alu Insertions and Genetic Diversity: A Preliminary Investigation by an Undergraduate Bioinformatics Class.

Published in:

Bioscene, 2008, v. 34, n. 2, p. 34

By:

Elwess, Nancy L.;
Duprey, Stephen L.;
Harney, Lindesay A.;
Langman, Jessie E.;
Marino, Tara C.;
Martinez, Carolina;
McKeon, Lauren L.;
Moss, Chantel I. E.;
Myrie, Sasha S.;
Taylor, Luke Ryan

Publication type:

Article

Stroke of GENEous: A Tool for Teaching Bioinformatics to Information Systems Majors.

Published in:

Bioscene, 2006, v. 32, n. 1, p. 4

By:

Tiketar, Rahul

Publication type:

Article

Only the tip of the Iceberg? Role of ATP7B‐exon skipping in Wilson disease.

Published in:

Liver International, 2018, v. 38, n. 8, p. 1375, doi. 10.1111/liv.13924

By:

Rupp, Christian;
Weiss, Karl Heinz

Publication type:

Article

A role of microRNA-370 in hepatic ischaemia-reperfusion injury by targeting transforming growth factor-β receptor II.

Published in:

Liver International, 2015, v. 35, n. 4, p. 1124, doi. 10.1111/liv.12441

By:

Li, Lan;
Li, Guogang;
Yu, Chaohui;
Shen, Zhe;
Xu, Chengfu;
Feng, Zhiying;
Zhang, Xuequn;
Li, Youming

Publication type:

Article