Works matching AU Tieliu Shi

Results: 98

Ligand cluster-based protein network and ePlatton, a multi-target ligand finder.

Published in:

Journal of Cheminformatics, 2016, v. 8, n. 1, p. 1, doi. 10.1186/s13321-016-0135-5

By:

Du, Yu;
Shi, Tieliu

Publication type:

Article

Genotype-phenotype correlations of Berardinelli-Seip congenital lipodystrophy and novel candidate genes prediction.

Published in:

2020

By:

Ren, Meng;
Shi, Jingru;
Jia, Jinmeng;
Guo, Yongli;
Ni, Xin;
Shi, Tieliu

Publication type:

journal article

PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.

Published in:

Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad690

By:

Wu, Jun;
Ouyang, Jian;
Qin, Haipeng;
Zhou, Jiajia;
Roberts, Ruth;
Siam, Rania;
Wang, Lan;
Tong, Weida;
Liu, Zhichao;
Shi, Tieliu

Publication type:

Article

Natural variations of growth thermo‐responsiveness determined by SAUR26/27/28 proteins in Arabidopsis thaliana.

Published in:

New Phytologist, 2019, v. 224, n. 1, p. 291, doi. 10.1111/nph.15956

By:

Wang, Zhixue;
Yang, Leiyun;
Liu, Zhenhua;
Lu, Minghui;
Wang, Minghui;
Sun, Qi;
Lan, Yiheng;
Shi, Tieliu;
Wu, Dianxing;
Hua, Jian

Publication type:

Article

Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis.

Published in:

Plant Journal, 2013, v. 76, n. 6, p. 943, doi. 10.1111/tpj.12344

By:

Wu, Wenjuan;
Zhu, Ying;
Ma, Zhaoxue;
Sun, Yi;
Quan, Quan;
Li, Peng;
Hu, Pengzhan;
Shi, Tieliu;
Lo, Clive;
Chu, Ivan K.;
Huang, Jirong

Publication type:

Article

TCMID: traditional Chinese medicine integrative database for herb molecular mechanism analysis.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D1089, doi. 10.1093/nar/gks1100

By:

Ruichao Xue;
Zhao Fang;
Meixia Zhang;
Zhenghui Yi;
Chengping Wen;
Tieliu Shi

Publication type:

Article

AtPID: the overall hierarchical functional protein interaction network interface and analytic platform for Arabidopsis.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D1130

By:

Li, Peng;
Zang, Weidong;
Li, Yuhua;
Xu, Feng;
Wang, Jigang;
Shi, Tieliu

Publication type:

Article

HLungDB: an integrated database of human lung cancer research.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D665, doi. 10.1093/nar/gkp945

By:

Lishan Wang;
Yuanyuan Xiong;
Yihua Sun;
Zhaoyuan Fang;
Li Li;
Hongbin Ji;
Tieliu Shi

Publication type:

Article

AtPID: Arabidopsis thaliana protein interactome database—an integrative platform for plant systems biology.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D999

By:

Cui, Jian;
Li, Peng;
Li, Guang;
Xu, Feng;
Zhao, Chen;
Li, Yuhua;
Yang, Zhongnan;
Wang, Guang;
Yu, Qingbo;
Li, Yixue;
Shi, Tieliu

Publication type:

Article

Exploration of gene–gene interaction effects using entropy-based methods.

Published in:

European Journal of Human Genetics, 2008, v. 16, n. 2, p. 229, doi. 10.1038/sj.ejhg.5201921

By:

Dong, Changzheng;
Chu, Xun;
Wang, Ying;
Wang, Yi;
Jin, Li;
Shi, Tieliu;
Huang, Wei;
Li, Yixue

Publication type:

Article

Hepatoblastoma: From Molecular Mechanisms to Therapeutic Strategies.

Published in:

Current Oncology, 2025, v. 32, n. 3, p. 149, doi. 10.3390/curroncol32030149

By:

Fan, Ling;
Na, Jintong;
Shi, Tieliu;
Liao, Yuan

Publication type:

Article

Ligand Binding Site Similarity Identification Based on Chemical and Geometric Similarity.

Published in:

Protein Journal, 2013, v. 32, n. 5, p. 373, doi. 10.1007/s10930-013-9494-1

By:

Tu, Haibo;
Shi, Tieliu

Publication type:

Article

Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.

Published in:

SCIENCE CHINA Life Sciences, 2013, v. 56, n. 2, p. 143, doi. 10.1007/s11427-013-4442-z

By:

Lu, BingXin;
Zeng, ZhenBing;
Shi, TieLiu

Publication type:

Article

Next-generation sequencing technologies for personalized medicine: promising but challenging.

Published in:

2013

By:

Chen, Geng;
Shi, TieLiu

Publication type:

Editorial

Overview of available methods for diverse RNA-Seq data analyses.

Published in:

SCIENCE CHINA Life Sciences, 2011, v. 54, n. 12, p. 1121, doi. 10.1007/s11427-011-4255-x

By:

Chen, Geng;
Wang, Charles;
Shi, TieLiu

Publication type:

Article

De novo transcriptome assembly of RNA-Seq reads with different strategies.

Published in:

SCIENCE CHINA Life Sciences, 2011, v. 54, n. 12, p. 1129, doi. 10.1007/s11427-011-4256-9

By:

Chen, Geng;
Yin, KangPing;
Wang, Charles;
Shi, TieLiu

Publication type:

Article

HiFun: homology independent protein function prediction by a novel protein-language self-attention model.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 5, p. 1, doi. 10.1093/bib/bbad311

By:

Wu, Jun;
Qing, Haipeng;
Ouyang, Jian;
Zhou, Jiajia;
Gao, Zihao;
Mason, Christopher E;
Liu, Zhichao;
Shi, Tieliu

Publication type:

Article

Editorial: Advancing Genomics for Rare Disease Diagnosis and Therapy Development.

Published in:

2020

By:

Liu, Zhichao;
Roberts, Ruth;
Shi, Tieliu;
Mikailov, Mike;
Tong, Weida

Publication type:

Editorial

Corrigendum: Genotype–Phenotype Association Analysis Reveals New Pathogenic Factors for Osteogenesis Imperfecta Disease.

Published in:

2020

By:

Shi, Jingru;
Ren, Meng;
Jia, Jinmeng;
Tang, Muxue;
Guo, Yongli;
Ni, Xin;
Shi, Tieliu

Publication type:

Correction Notice

A Novel Risk-Score Model With Eight MiRNA Signatures for Overall Survival of Patients With Lung Adenocarcinoma.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.741112

By:

Wu, Jun;
Lou, Yuqing;
Ma, Yi-Min;
Xu, Jun;
Shi, Tieliu

Publication type:

Article

A Novel Germline Compound Heterozygous Mutation of BRCA2 Gene Associated With Familial Peripheral Neuroblastic Tumors in Two Siblings.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.652718

By:

Yang, Yeran;
Chen, Jiwei;
Qin, Hong;
Jin, Yaqiong;
Zhang, Li;
Yang, Shen;
Wang, Huanmin;
Fu, Libing;
Hong, Enyu;
Yu, Yongbo;
Lu, Jie;
Chang, Yan;
Ni, Xin;
Xu, Min;
Shi, Tieliu;
Guo, Yongli

Publication type:

Article

Phenotype-genotype correlation in eight Chinese 17alpha-hydroxylase/17,20 lyase-deficiency patients with five novel mutations of CYP17A1 gene.

Published in:

2006

By:

Yang, Jun;
Cui, Bin;
Sun, Shouyue;
Shi, Tieliu;
Zheng, Siyuan;
Bi, Yufang;
Liu, Jianmin;
Zhao, Yongju;
Chen, Jialun;
Ning, Guang;
Li, Xiaoying

Publication type:

journal article

Regulatory network rewiring for secondary metabolism in Arabidopsis thaliana under various conditions.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-180

By:

Qi Lv;
Rong Cheng;
Tieliu Shi

Publication type:

Article

Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 8, p. e102, doi. 10.1371/journal.pcbi.0020102

By:

Guohui Ding;
Jiuhong Kang;
Qi Liu;
Tieliu Shi;
Gang Pei;
Yixue Li

Publication type:

Article

A functional SNP in the 3′‐UTR of TAP2 gene interacts with microRNA hsa‐miR‐1270 to suppress the gene expression.

Published in:

Environmental & Molecular Mutagenesis, 2018, v. 59, n. 2, p. 134, doi. 10.1002/em.22159

By:

Knox, Bridgett;
Wang, Yong;
Rogers, Lora J.;
Xuan, Jiekun;
Yu, Dianke;
Guan, Huaijin;
Chen, Jiwei;
Shi, Tieliu;
Ning, Baitang;
Kadlubar, Susan A.

Publication type:

Article

Prognostic significance of vascular endothelial growth factor expression in gastric carcinoma: a meta-analysis.

Published in:

Journal of Cancer Research & Clinical Oncology, 2011, v. 137, n. 12, p. 1799, doi. 10.1007/s00432-011-1057-2

By:

Chen, Jing;
Li, Tao;
Wu, Yuanyuan;
He, Lijun;
Zhang, Li;
Shi, Tieliu;
Yi, Zhengfang;
Liu, Mingyao;
Pang, Xiufeng

Publication type:

Article

Integrating multiple resources to identify specific transcriptional cooperativity with a Bayesian approach.

Published in:

Bioinformatics, 2014, v. 30, n. 6, p. 823, doi. 10.1093/bioinformatics/btt596

By:

Hu, Pengzhan;
Shen, Zhongchao;
Tu, Haibo;
Zhang, Li;
Shi, Tieliu

Publication type:

Article

Disease spectrum analysis of hospitalized children in China: A study of 18 tertiary children's hospitals.

Published in:

Pediatric Investigation, 2019, v. 3, n. 3, p. 159, doi. 10.1002/ped4.12144

By:

Feng, Guoshuang;
Zeng, Yueping;
Tian, Jian;
Wang, Xinyu;
Tai, Jun;
Song, Fei;
Zhang, Xin;
Xu, Xin;
Chen, Jun;
Shi, Tieliu;
Ni, Xin;
Wu, Mei;
Wang, Guosong;
Li, Li;
Sun, Hongjie;
Da, Zhenqiang;
Wang, Wenjuan;
He, Qinghong;
Liu, Shaoqian;
Dai, Ling

Publication type:

Article

Application of genome analysis strategies in the clinical testing for pediatric diseases.

Published in:

Pediatric Investigation, 2018, v. 2, n. 2, p. 72, doi. 10.1002/ped4.12044

By:

Jin, Yaqiong;
Zhang, Li;
Ning, Baitang;
Hong, Huixiao;
Xiao, Wenming;
Tong, Weida;
Tao, Yiran;
Ni, Xin;
Shi, Tieliu;
Guo, Yongli

Publication type:

Article

Diverse contributions of MYC2 and EIN3 in the regulation of Arabidopsis jasmonate‐responsive gene expression.

Published in:

Plant Direct, 2017, v. 1, n. 4, p. 1, doi. 10.1002/pld3.15

By:

Zheng, Yuyu;
Lan, Yiheng;
Shi, Tieliu;
Zhu, Ziqiang

Publication type:

Article

SMPD1 expression profile and mutation landscape help decipher genotype–phenotype association and precision diagnosis for acid sphingomyelinase deficiency.

Published in:

Hereditas, 2023, v. 160, n. 1, p. 1, doi. 10.1186/s41065-023-00272-1

By:

Wang, Ruisong;
Qin, Ziyi;
Huang, Long;
Luo, Huiling;
Peng, Han;
Zhou, Xinyu;
Zhao, Zhixiang;
Liu, Mingyao;
Yang, Pinhong;
Shi, Tieliu

Publication type:

Article

Static magnetic field regulates Arabidopsis root growth via auxin signaling.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50970-y

By:

Jin, Yue;
Guo, Wei;
Hu, Xupeng;
Liu, Mengmeng;
Xu, Xiang;
Hu, Fenhong;
Lan, Yiheng;
Lv, Chenkai;
Fang, Yanwen;
Liu, Mengyu;
Shi, Tieliu;
Ma, Shisong;
Fang, Zhicai;
Huang, Jirong

Publication type:

Article

Prognostic value of PNN in prostate cancer and its correlation with therapeutic significance.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.1056224

By:

Ruisong Wang;
Ziyi Qin;
Huiling Luo;
Meisen Pan;
Mingyao Liu;
Pinhong Yang;
Tieliu Shi

Publication type:

Article

Single-cell technologies: current and near future.

Published in:

SCIENCE CHINA Life Sciences, 2025, v. 68, n. 1, p. 1, doi. 10.1007/s11427-024-2813-y

By:

Wang, Chenfei;
Liu, Qi;
Fan, Xiaohui;
Shi, Tieliu

Publication type:

Article

Single-cell omics: experimental workflow, data analyses and applications.

Published in:

SCIENCE CHINA Life Sciences, 2025, v. 68, n. 1, p. 5, doi. 10.1007/s11427-023-2561-0

By:

Sun, Fengying;
Li, Haoyan;
Sun, Dongqing;
Fu, Shaliu;
Gu, Lei;
Shao, Xin;
Wang, Qinqin;
Dong, Xin;
Duan, Bin;
Xing, Feiyang;
Wu, Jun;
Xiao, Minmin;
Zhao, Fangqing;
Han, Jing-Dong J.;
Liu, Qi;
Fan, Xiaohui;
Li, Chen;
Wang, Chenfei;
Shi, Tieliu

Publication type:

Article

Novel loci and potential mechanisms of major depressive disorder, bipolar disorder, and schizophrenia.

Published in:

SCIENCE CHINA Life Sciences, 2022, v. 65, n. 1, p. 167, doi. 10.1007/s11427-020-1934-x

By:

Wang, He;
Yi, Zhenghui;
Shi, Tieliu

Publication type:

Article

Single-cell transcriptomic analysis reveals dynamic alternative splicing and gene regulatory networks among pancreatic islets.

Published in:

2021

By:

Li, Yunjin;
Chen, Jiwei;
Xu, Qiyue;
Han, Zebei;
Tan, Fei;
Shi, Tieliu;
Chen, Geng

Publication type:

Letter

Innovation for better health of children.

Published in:

2019

By:

Shen, Ying;
Shi, Tieliu

Publication type:

Editorial

Sequencing XMET genes to promote genotype-guided risk assessment and precision medicine.

Published in:

SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 895, doi. 10.1007/s11427-018-9479-5

By:

Jin, Yaqiong;
Chen, Geng;
Xiao, Wenming;
Hong, Huixiao;
Xu, Joshua;
Guo, Yongli;
Xiao, Wenzhong;
Shi, Tieliu;
Shi, Leming;
Tong, Weida;
Ning, Baitang

Publication type:

Article

QuaPra: Efficient transcript assembly and quantification using quadratic programming with Apriori algorithm.

Published in:

SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 937, doi. 10.1007/s11427-018-9433-3

By:

Ji, Xiangjun;
Tong, Weida;
Ning, Baitang;
Mason, Christopher E.;
Kreil, David P.;
Labaj, Pawel P.;
Chen, Geng;
Shi, Tieliu

Publication type:

Article

Lack of correlation between aristolochic acid exposure and hepatocellular carcinoma.

Published in:

SCIENCE CHINA Life Sciences, 2018, v. 61, n. 6, p. 727, doi. 10.1007/s11427-018-9288-1

By:

Ji, Xiangjun;
Feng, Guoshuang;
Chen, Geng;
Shi, Tieliu

Publication type:

Article

Biological data processing based on bio-processor unit (BPU), a new concept for next generation computational biology.

Published in:

SCIENCE CHINA Life Sciences, 2018, v. 61, n. 5, p. 597, doi. 10.1007/s11427-018-9278-3

By:

Liu, Di;
Bu, Dongbo;
Shi, Tieliu;
Quan, Jianxiao;
Wang, Depeng;
Shi, Yongyong;
Bo, Xiao-Chen;
Han, Wenbao

Publication type:

Article

Towards efficiency in rare disease research: what is distinctive and important?

Published in:

SCIENCE CHINA Life Sciences, 2017, v. 60, n. 7, p. 686, doi. 10.1007/s11427-017-9099-3

By:

Jia, Jinmeng;
Shi, Tieliu

Publication type:

Article

The challenge and promise of rare disease diagnosis in China.

Published in:

2017

By:

Ni, Xin;
Shi, Tieliu

Publication type:

Editorial

Erratum to: Acidic domains differentially read histone H3 lysine 4 methylation status and are widely present in chromatin-associated proteins.

Published in:

2017

By:

Wu, Meng;
Wei, Wei;
Chen, Jiwei;
Cong, Rong;
Shi, Tieliu;
Bouvet, Philippe;
Li, Jiwen;
Wong, Jiemin;
Du, James

Publication type:

Erratum

Significant variations in alternative splicing patterns and expression profiles between human-mouse orthologs in early embryos.

Published in:

SCIENCE CHINA Life Sciences, 2017, v. 60, n. 2, p. 178, doi. 10.1007/s11427-015-0348-5

By:

Chen, Geng;
Chen, Jiwei;
Yang, Jianmin;
Chen, Long;
Qu, Xiongfei;
Shi, Caiping;
Ning, Baitang;
Shi, Leming;
Tong, Weida;
Zhao, Yongxiang;
Zhang, Meixia;
Shi, Tieliu

Publication type:

Article

Characterizing and annotating the genome using RNA-seq data.

Published in:

SCIENCE CHINA Life Sciences, 2017, v. 60, n. 2, p. 116, doi. 10.1007/s11427-015-0349-4

By:

Chen, Geng;
Shi, Tieliu;
Shi, Leming

Publication type:

Article

Acidic domains differentially read histone H3 lysine 4 methylation status and are widely present in chromatin-associated proteins.

Published in:

SCIENCE CHINA Life Sciences, 2017, v. 60, n. 2, p. 138, doi. 10.1007/s11427-016-0413-3

By:

Wu, Meng;
Wei, Wei;
Chen, Jiwei;
Cong, Rong;
Shi, Tieliu;
Li, Jiwen;
Wong, Jiemin;
Du, James

Publication type:

Article

Ten years of achievements in biological and medical sciences.

Published in:

2017

By:

Liu, Mingyao;
Shi, Tieliu

Publication type:

Editorial

Interplay of transcription factors and microRNAs during embryonic hematopoiesis.

Published in:

SCIENCE CHINA Life Sciences, 2017, v. 60, n. 2, p. 168, doi. 10.1007/s11427-016-0168-0

By:

Gong, Xueping;
Chao, Ruihua;
Wang, Pengxiang;
Huang, Xiaoli;
Zhang, Jingjing;
Zhu, Xiaozhou;
Zhang, Yanyang;
Yang, Xue;
Hou, Chao;
Ji, Xiangjun;
Shi, Tieliu;
Wang, Yuan

Publication type:

Article