Works by Subramaniam, Shankar

Results: 143

Plant phenyl-propanoids-conjugated silver nanoparticles from edible plant Suaeda maritima (L.) dumort. Inhibit proliferation of K562-human myeloid leukemia cells.

Published in:

Artificial Cells, Nanomedicine & Biotechnology, 2017, v. 45, n. 7, p. 1336, doi. 10.1080/21691401.2016.1236803

By:

Rajendran, Narendran;
Subramaniam, Shankar;
Raja, Mamilla R. Charan;
Brindha, Pemaiah;
Kar Mahapatra, Santanu;
Sivasubramanian, Aravind

Publication type:

Article

Technical Variations in Low-Input RNA-seq Methodologies.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep03678

By:

Bhargava, Vipul;
Head, Steven R.;
Ordoukhanian, Phillip;
Mercola, Mark;
Subramaniam, Shankar

Publication type:

Article

MetGENE: gene-centric metabolomics information retrieval tool.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad089

By:

Srinivasan, Sumana;
Maurya, Mano R;
Ramachandran, Srinivasan;
Fahy, Eoin;
Subramaniam, Shankar

Publication type:

Article

The Janus face of proliferating plasmablasts in dengue and COVID-19 infections.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1068424

By:

Nayak, Priya;
Mukund, Kavitha;
Subramaniam, Shankar

Publication type:

Article

Binding of the neuroleptic drug haloperidol to a monoclonal antibody: Refinement of the binding site molecular model using canonical structures.

Published in:

Journal of Molecular Recognition, 1991, v. 4, n. 1, p. 7, doi. 10.1002/jmr.300040103

By:

Anchin, Jerry M.;
Subramaniam, Shankar;
Linthicum, D. Scott

Publication type:

Article

Template-based combinatorial enumeration of virtual compound libraries for lipids.

Published in:

Journal of Cheminformatics, 2012, v. 4, n. 1, p. 23, doi. 10.1186/1758-2946-4-23

By:

Sud, Manish;
Fahy, Eoin;
Subramaniam, Shankar

Publication type:

Article

Impact of post‐harvest processing or thermal dehydration on physiochemical, nutritional and sensory quality of shiitake mushrooms.

Published in:

Comprehensive Reviews in Food Science & Food Safety, 2021, v. 20, n. 3, p. 2560, doi. 10.1111/1541-4337.12738

By:

Subramaniam, Shankar;
Jiao, Shunshan;
Zhang, Zhentao;
Jing, Pu

Publication type:

Article

Substantial reduction of carbon black and balancing the technical properties of styrene butadiene rubber compounds using nanoclay.

Published in:

Journal of Rubber Research, 2020, v. 23, n. 2, p. 79, doi. 10.1007/s42464-020-00039-7

By:

Mohan Kumar, Harikrishna Kumar;
Subramaniam, Shankar;
Rathanasamy, Rajasekar;
Pal, Samir Kumar;
Palaniappan, Sathish Kumar

Publication type:

Article

Evaluation of vibrant muscles over the shoulder region among workers of the hand screen printing industry.

Published in:

International Journal of Occupational Safety & Ergonomics, 2018, v. 24, n. 2, p. 278, doi. 10.1080/10803548.2017.1280914

By:

Subramaniam, Shankar;
Raju, Naveenkumar;
Jeganathan, Karthick;
Periyasamy, Mohankumar

Publication type:

Article

Investigation of work-related musculoskeletal disorders among male kitchen workers in South India.

Published in:

International Journal of Occupational Safety & Ergonomics, 2015, v. 21, n. 4, p. 524, doi. 10.1080/10803548.2015.1096063

By:

Subramaniam, Shankar;
Murugesan, Shanmugam

Publication type:

Article

Human iPSC‐derived neuron modeling for the study of early‐onset Alzheimer's disease.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, n. S8, p. 1, doi. 10.1002/alz.094681

By:

Valdes, Phoebe;
Caldwell, Andrew B.;
Liu, Qing;
Henry, Kenneth W.;
Fitzgerald, Michael Q;
Muralidharan, Koushik;
Ramachandran, Srinivasan;
Karch, Celeste M.;
Yuan, Shauna H;
Wagner, Steven L;
Goldstein, Lawrence S.B.;
Mobley, William C.;
Galasko, Douglas R.;
Subramaniam, Shankar

Publication type:

Article

Methadone disrupts early synaptic development in human cortical organoids.

Published in:

FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R3099

By:

Dwivedi, Ila;
Zhou, Dan;
Caldwell, Andrew;
Subramaniam, Shankar;
Haddad, Gabriel

Publication type:

Article

Antimicrobial flavonoids isolated from Indian medicinal plant Scutellaria oblonga inhibit biofilms formed by common food pathogens.

Published in:

Natural Product Research, 2016, v. 30, n. 17, p. 2002, doi. 10.1080/14786419.2015.1104673

By:

Rajendran, Narendran;
Subramaniam, Shankar;
Christena, Lowrence Rene;
Muthuraman, Meenakshi Sundaram;
Subramanian, Nagarajan Sai;
Pemiah, Brindha;
Sivasubramanian, Aravind

Publication type:

Article

Phylogenomic Analysis of the α Proteasome Gene Family from Early-Diverging Eukaryotes.

Published in:

Journal of Molecular Evolution, 2000, v. 51, n. 6, p. 532, doi. 10.1007/s002390010117

By:

Bouzat, Juan L.;
McNeil, Leslie K.;
Robertson, Hugh M.;
Solter, Leellen F.;
Nixon, Julie E.;
Beever, Jonathan E.;
Gaskins, H. Rex;
Olsen, Gary;
Subramaniam, Shankar;
Sogin, Mitchell L.;
Lewin, Harris A.

Publication type:

Article

Effects of Abrasive Waterjet Machining on the Quality of the Surface Generated on a Carbon Fibre Reinforced Polymer Composite.

Published in:

Machines, 2023, v. 11, n. 7, p. 749, doi. 10.3390/machines11070749

By:

Rowe, Andrew;
Pramanik, Alokesh;
Basak, Animesh Kumar;
Prakash, Chander;
Subramaniam, Shankar;
Dixit, Amit Rai;
Radhika, N.

Publication type:

Article

Tribo-mechanical behaviour of aluminium alloy (AlSi10Mg) reinforced with palmyra shell ash and silicon carbide particles.

Published in:

Metallurgical Research & Technology, 2022, v. 119, n. 3, p. 1, doi. 10.1051/metal/2022038

By:

Subramaniam, Shankar;
Raju, Naveenkumar;
Shanmugam, Elango;
Rajavel, Nithyaprakash;
Pramanik, Alokesh;
Basak, Animesh Kumar;
Prakash, Chander;
Gur, Ali Kaya

Publication type:

Article

Methadone alters transcriptional programs associated with synapse formation in human cortical organoids.

Published in:

Translational Psychiatry, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41398-023-02397-3

By:

Dwivedi, Ila;
Caldwell, Andrew B.;
Zhou, Dan;
Wu, Wei;
Subramaniam, Shankar;
Haddad, Gabriel G.

Publication type:

Article

Experimental investigations of vibration and acoustics signals in milling process using kapok oil as cutting fluid.

Published in:

Mechanics & Industry, 2020, v. 21, n. 5, p. 1, doi. 10.1051/meca/2020066

By:

Shankar, Subramaniam;
Manikandan, Murugasamy;
Raja, Gunasekaran;
Pramanik, Alokesh

Publication type:

Article

Ursolic acid inhibits colistin efflux and curtails colistin resistant Enterobacteriaceae.

Published in:

AMB Express, 2019, v. 9, n. 1, p. 1, doi. 10.1186/s13568-019-0750-4

By:

Sundaramoorthy, Niranjana Sri;
Mohan, Harihar M.;
Subramaniam, Shankar;
Raman, Thiagarajan;
Selva Ganesan, Subramaniapillai;
Sivasubamanian, Aravind;
Nagarajan, Saisubramanian

Publication type:

Article

The Molecule Pages Database.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 7, p. 2457, doi. 10.1093/nar/gkn139

By:

Saunders, Brian;
Lyon, Stephen;
Day, Matthew;
Riley, Brenda;
Chenette, Emily;
Subramaniam, Shankar

Publication type:

Article

The Molecule Pages database.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D700

By:

Saunders, Brian;
Lyon, Stephen;
Day, Matthew;
Riley, Brenda;
Chenette, Emily;
Subramaniam, Shankar

Publication type:

Article

LIPID MAPS online tools for lipid research.

Published in:

Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W606, doi. 10.1093/nar/gkm324

By:

Fahy, Eoin;
Sud, Manish;
Cotter, Dawn;
Subramaniam, Shankar

Publication type:

Article

LMSD: LIPID MAPS structure database.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d527, doi. 10.1093/nar/gkl838

By:

Sud, Manish;
Fahy, Eoin;
Cotter, Dawn;
Brown, Alex;
Dennis, Edward A.;
Glass, Christopher K.;
Merrill, Alfred H.;
Murphy, Robert C.;
Raetz, Christian R. H.;
Russell, David W.;
Subramaniam, Shankar

Publication type:

Article

LMPD: LIPID MAPS proteome database.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d507, doi. 10.1093/nar/gkj122

By:

Cotter, Dawn;
Maer, Andreia;
Guda, Chittibabu;
Saunders, Brian;
Subramaniam, Shankar

Publication type:

Article

VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w627, doi. 10.1093/nar/gki443

By:

Hsiao, Albert;
Ideker, Trey;
Olefsky, Jerrold M.;
Subramaniam, Shankar

Publication type:

Article

MITOPRED: a web server for the prediction of mitochondrial proteins.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w372, doi. 10.1093/nar/gkh374

By:

Guda, Chittibabu;
Guda, Purnima;
Fahy, Eoin;
Subramaniam, Shankar

Publication type:

Article

SledgeHMMER: a web server for batch searching the Pfam database.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w542, doi. 10.1093/nar/gkh395

By:

Chukkapalli, Giridhar;
Guda, Chittibabu;
Subramaniam, Shankar

Publication type:

Article

MitoProteome: mitochondrial protein sequence database and annotation system.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d463

By:

Cotter, Dawn;
Guda, Purnima;
Fahy, Eoin;
Subramaniam, Shankar

Publication type:

Article

EXAMINATION OF B<sub>4</sub>C–FeCrC COMPOSITE LAYER DURING DRY SLIDING USING STATISTICAL METHOD.

Published in:

Surface Review & Letters, 2021, v. 28, n. 05, p. N.PAG, doi. 10.1142/S0218625X21500347

By:

GUR, ALI KAYA;
ICEN, BUSRA;
SHANKAR, SUBRAMANIAM;
MOHANRAJ, THANGAMUTHU

Publication type:

Article

Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease.

Published in:

Molecular Brain, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13041-023-01063-5

By:

Valdes, Phoebe;
Henry, Kenneth W.;
Fitzgerald, Michael Q.;
Muralidharan, Koushik;
Caldwell, Andrew B.;
Ramachandran, Srinivasan;
Goldstein, Lawrence S. B.;
Mobley, William C.;
Galasko, Douglas R.;
Subramaniam, Shankar

Publication type:

Article

Modeling Multiphase Heat and Mass Transfer in an Agitated Filter Dryer by Integrating Experiment, Computations, and Analytical Solutions.

Published in:

Pharmaceutical Research, 2022, v. 39, n. 9, p. 1971, doi. 10.1007/s11095-022-03382-z

By:

Belekar, Viraj V.;
Murphy, Eric J.;
Heindel, Theodore J.;
Nere, Nandkishor K.;
Subramaniam, Shankar

Publication type:

Article

Temporal transcriptional control of neural induction in human induced pluripotent stem cells.

Published in:

Frontiers in Molecular Neuroscience, 2023, p. 01, doi. 10.3389/fnmol.2023.1139287

By:

Gupta, Shakti;
Polit, Lucia Dutan;
Fitzgerald, Michael;
Rowland, Helen A.;
Murali, Divya;
Buckley, Noel J.;
Subramaniam, Shankar

Publication type:

Article

Locally defined protein phylogenetic profiles reveal previously missed protein interactions and functional relationships.

Published in:

Proteins, 2006, v. 62, n. 4, p. 1115, doi. 10.1002/prot.20830

By:

Kim, Yohan;
Subramaniam, Shankar

Publication type:

Article

Protein local structure prediction from sequence.

Published in:

Proteins, 2003, v. 50, n. 4, p. 572, doi. 10.1002/prot.10310

By:

Hunter, Cornelius G.;
Subramaniam, Shankar

Publication type:

Article

Protein fragment clustering and canonical local shapes.

Published in:

Proteins, 2003, v. 50, n. 4, p. 580, doi. 10.1002/prot.10309

By:

Hunter, Cornelius G.;
Subramaniam, Shankar

Publication type:

Article

Natural coordinate representation for the protein backbone structure.

Published in:

Proteins, 2002, v. 49, n. 2, p. 206, doi. 10.1002/prot.10201

By:

Hunter, Cornelius G.;
Subramaniam, Shankar

Publication type:

Article

Knowledge-based interaction potentials for proteins.

Published in:

Proteins, 1999, v. 36, n. 1, p. 54, doi. 10.1002/(SICI)1097-0134(19990701)36:1<54::AID-PROT5>3.0.CO;2-B

By:

Rojnuckarin, Atipat;
Subramaniam, Shankar

Publication type:

Article

Analytical Shape Computation of Macromolecules: !I. Inaccessible Cavities in Proteins

Published in:

Proteins, 1998, v. 33, n. 1, p. 18

By:

Liang, Jie;
Edelsbrunner, Herbert;
Fu, Ping;
Sudhakar, Pamidighantam V.;
Subramaniam, Shankar

Publication type:

Article

Analytical Shape Computation of Macromolecules: I. Molecular Area and Volume Through Alpha Shape

Published in:

Proteins, 1998, v. 33, n. 1, p. 1

By:

Liang, Jie;
Edelsbrunner, Herbert;
Fu, Ping;
Sudhakar, Pamidighantam V.;
Subramaniam, Shankar

Publication type:

Article

The Biology Workbench--A Seamless Database and Analysis Environment for the Biologist

Published in:

Proteins, 1998, v. 32, n. 1, p. 1

By:

Subramaniam, Shankar

Publication type:

Article

Treatment of electrostatic effects in proteins: Multigrid-based newton iterative method for solution of the full nonlinear poisson-boltzmann equation.

Published in:

Proteins, 1994, v. 18, n. 3, p. 231, doi. 10.1002/prot.340180304

By:

Holst, Michael;
Kozack, Richard E.;
Saied, Faisal;
Subramaniam, Shankar

Publication type:

Article

A benign alternative process for efficient separation of pure commercially important flavonoid nutraceuticals from edible plants.

Published in:

Journal of Food Science & Technology, 2017, v. 54, n. 6, p. 1519, doi. 10.1007/s13197-017-2583-y

By:

Subramaniam, Shankar;
Raju, Ravikumar;
Sivasubramanian, Aravind

Publication type:

Article

Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes.

Published in:

PLoS Genetics, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pgen.1002401

By:

Escoubet-Lozach, Laure;
Benner, Christopher;
Kaikkonen, Minna U.;
Lozach, Jean;
Heinz, Sven;
Spann, Nathan J.;
Crotti, Andrea;
Stender, Josh;
Ghisletti, Serena;
Reichart, Donna;
Cheng, Christine S.;
Luna, Rosa;
Ludka, Colleen;
Sasik, Roman;
Garcia-Bassets, Ivan;
Hoffmann, Alexander;
Subramaniam, Shankar;
Hardiman, Gary;
Rosenfeld, Michael G.;
Glass, Christopher K.

Publication type:

Article

Macrophage PPAR gamma is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones.

Published in:

2007

By:

Hevener, Andrea L;
Olefsky, Jerrold M;
Reichart, Donna;
Nguyen, M T Audrey;
Bandyopadyhay, Gautam;
Leung, Ho-Yin;
Watt, Matthew J;
Benner, Chris;
Febbraio, Mark A;
Nguyen, Anh-Khoi;
Folian, Brian;
Subramaniam, Shankar;
Gonzalez, Frank J;
Glass, Christopher K;
Ricote, Mercedes

Publication type:

journal article

Macrophage PPARγ is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones.

Published in:

Journal of Clinical Investigation, 2007, v. 117, n. 6, p. 1658, doi. 10.1172/JCI31561

By:

Hevener, Andrea L.;
Olefsky, Jerrold M.;
Reichart, Donna;
Nguyen, M. T. Audrey;
Bandyopadyhay, Gautam;
Ho-Yin Leung;
Watt, Matthew J.;
Benner, Chris;
Febbraio, Mark A.;
Anh-Khoi Nguyen;
Folian, Brian;
Subramaniam, Shankar;
Gonzalez, Frank J.;
Glass, Christopher K.;
Ricote, Mercedes

Publication type:

Article

Functional annotation of regulatory pathways.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i377, doi. 10.1093/bioinformatics/btm203

By:

Jayesh Pandey;
Mehmet Koyutürk;
Yohan Kim;
Wojciech Szpankowski;
Shankar Subramaniam;
Ananth Grama

Publication type:

Article

Inferring functional information from domain co-evolution.

Published in:

Bioinformatics, 2006, v. 22, n. 1, p. 40, doi. 10.1093/bioinformatics/bti723

By:

Yohan Kim;
Mehmet Koyutrk;
Umut Topkara;
Ananth Grama;
Shankar Subramaniam

Publication type:

Article

TARGET: a new method for predicting protein subcellular localization in eukaryotes.

Published in:

Bioinformatics, 2005, v. 21, n. 21, p. 3963, doi. 10.1093/bioinformatics/bti650

By:

Chittibabu Guda;
Shankar Subramaniam

Publication type:

Article

MITOPRED: a genome-scale method for prediction of nucleus-encoded mitochondrial proteins.

Published in:

Bioinformatics, 2004, v. 20, n. 11, p. 1785, doi. 10.1093/bioinformatics/bth171

By:

Chittibabu Guda;
Eoin Fahy;
Shankar Subramaniam

Publication type:

Article

Reconstruction of cellular signalling networks and analysis of their properties.

Published in:

Nature Reviews Molecular Cell Biology, 2005, v. 6, n. 2, p. 99, doi. 10.1038/nrm1570

By:

Papin, Jason A.;
Hunter, Tony;
Palsson, Bernhard O.;
Subramaniam, Shankar

Publication type:

Article