Works by Srinivasan, Narayanaswamy

Results: 101

Small molecule inhibitors of HCV replication from Pomegranate.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05411

By:

Reddy, B. Uma;
Mullick, Ranajoy;
Kumar, Anuj;
Sudha, Govindarajan;
Srinivasan, Narayanaswamy;
Das, Saumitra

Publication type:

Article

Synthesis and spectral studies on N, N, N′, N′-tetramethylethylenediamine adducts of M(II) heterocyclic dithiocarbamates (M=zinc, cadmium): single crystal X-ray structure analysis of bis(1,2,3,4-tetrahydroquinolinecarbodithioato- S, S′)( N, N, N′, N′-tetramethylethylenediamine) cadmium(II)

Published in:

Main Group Metal Chemistry, 2012, v. 35, n. 1/2, p. 53, doi. 10.1515/mgmc-2012-0906

By:

Srinivasan, Narayanaswamy;
Thirumaran, Subbiah;
Ciattini, Samuele

Publication type:

Article

iPBA: a tool for protein structure comparison using sequence alignment strategies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W18, doi. 10.1093/nar/gkr333

By:

Gelly, Jean-Christophe;
Joseph, Agnel Praveen;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.

Publication type:

Article

Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.

Published in:

RNA Biology, 2016, v. 13, n. 10, p. 1025, doi. 10.1080/15476286.2016.1218590

By:

Rakesh, Ramachandran;
Joseph, Agnel Praveen;
Bhaskara, Ramachandra M.;
Srinivasan, Narayanaswamy

Publication type:

Article

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Published in:

Proteins, 2006, v. 65, n. 1, p. 32, doi. 10.1002/prot.21087

By:

Tyagi, Manoj;
Gowri, Venkataraman S.;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.;
Offmann, Bernard

Publication type:

Article

Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility.

Published in:

Journal of Biosciences, 2020, v. 45, n. 1, p. 1, doi. 10.1007/s12038-020-00046-1

By:

Maitra, Arindam;
Sarkar, Mamta Chawla;
Raheja, Harsha;
Biswas, Nidhan K;
Chakraborti, Sohini;
Singh, Animesh Kumar;
Ghosh, Shekhar;
Sarkar, Sumanta;
Patra, Subrata;
Mondal, Rajiv Kumar;
Ghosh, Trinath;
Chatterjee, Ananya;
Banu, Hasina;
Majumdar, Agniva;
Chinnaswamy, Sreedhar;
Srinivasan, Narayanaswamy;
Dutta, Shanta;
Das, Saumitra

Publication type:

Article

EmbR, a regulatory protein with ATPase activity, is a substrate of multiple serine/threonine kinases and phosphatase in Mycobacterium tuberculosis.

Published in:

FEBS Journal, 2006, v. 273, n. 7, p. 2711, doi. 10.1111/j.1742-4658.2006.05289.x

By:

Sharma, Kirti;
Gupta, Meetu;
Krupa, Ananth;
Srinivasan, Narayanaswamy;
Singh, Yogendra

Publication type:

Article

' All That Glitters Is Not Gold ': High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 13, p. 6830, doi. 10.3390/ijms22136830

By:

Chakraborti, Sohini;
Hatti, Kaushik;
Srinivasan, Narayanaswamy

Publication type:

Article

Trans effect of triphenylphosphine on Ni–S bonds in solid state and DFT/B3LYP optimized structure: Synthesis, spectral and structural studies on (bis(2-ethylhexyl)dithiocarbamato-S,S′)(thiocyanato- N )(triphenylphosphine)nickel(II).

Published in:

Phosphorus, Sulfur & Silicon & the Related Elements, 2016, v. 191, n. 8, p. 1183, doi. 10.1080/10426507.2016.1160239

By:

Valarmathi, Panneerselvam;
Srinivasan, Narayanaswamy;
Thirumaran, Subbiah;
Saminathan, Kolandaivelu

Publication type:

Article

Scrotal calcinosis: a rare entity.

Published in:

ANZ Journal of Surgery, 2011, v. 81, n. 3, p. 203, doi. 10.1111/j.1445-2197.2010.05661.x

By:

Bolbandi, Ashok K.;
Narayanaswamy, Srinivasan;
Krishnappa, Pramod

Publication type:

Article

Sequence Divergence and Functional Specializations of the Ancient Spliceosomal SF3b: Implications in Flexibility and Adaptations of the Multi-Protein Complex.

Published in:

Frontiers in Genetics, 2022, v. 12, p. 1, doi. 10.3389/fgene.2021.747344

By:

Yazhini, Arangasamy;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

The destabilization of human GCAP1 by a proline to leucine mutation might cause cone-rod dystrophy.

Published in:

Human Molecular Genetics, 2001, v. 10, n. 1, p. 47, doi. 10.1093/hmg/10.1.47

By:

Newbold, Richard J.;
Deery, Evelyne C.;
Walker, Caroline E.;
Wilkie, Susan E.;
Srinivasan, Narayanaswamy;
Hunt, David M.;
Bhattacharya, Shomi S.;
Warren, Martin J.

Publication type:

Article

Proteomics analysis of carbon-starved Mycobacterium smegmatis: induction of Dps-like protein.

Published in:

Protein Engineering, 2002, v. 15, n. 6, p. 503, doi. 10.1093/protein/15.6.503

By:

Gupta, Surbhi;
Pandit, Shashi Bhushan;
Srinivasan, Narayanaswamy;
Chatterji, Dipankar

Publication type:

Article

Knowledge-based prediction of protein backbone conformation using a structural alphabet.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0186215

By:

Vetrivel, Iyanar;
Mahajan, Swapnil;
Tyagi, Manoj;
Hoffmann, Lionel;
Sanejouand, Yves-Henri;
Srinivasan, Narayanaswamy;
De Brevern, Alexandre G.;
Cadet, Frédéric;
Offmann, Bernard

Publication type:

Article

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.

Published in:

Source Code for Biology & Medicine, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13029-019-0075-3

By:

Faure, Guilhem;
Joseph, Agnel Praveen;
Craveur, Pierrick;
Narwani, Tarun J.;
Srinivasan, Narayanaswamy;
Gelly, Jean-Christophe;
Rebehmed, Joseph;
de Brevern, Alexandre G.

Publication type:

Article

Chandrasekharan Ramakrishnan (1939–2019): The student behind the Ramachandran map.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 11, p. 1920, doi. 10.1002/pro.3723

By:

Srinivasan, Narayanaswamy

Publication type:

Article

Weak conservation of structural features in the interfaces of homologous transient protein-protein complexes.

Published in:

Protein Science: A Publication of the Protein Society, 2015, v. 24, n. 11, p. 1856, doi. 10.1002/pro.2792

By:

Sudha, Govindarajan;
Singh, Prashant;
Swapna, Lakshmipuram S.;
Srinivasan, Narayanaswamy

Publication type:

Article

Use of a structural alphabet to find compatible folds for amino acid sequences.

Published in:

Protein Science: A Publication of the Protein Society, 2015, v. 24, n. 1, p. 145, doi. 10.1002/pro.2581

By:

Mahajan, Swapnil;
Brevern, Alexandre G.;
Sanejouand, Yves ‐ Henri;
Srinivasan, Narayanaswamy;
Offmann, Bernard

Publication type:

Article

Ramachandran analysis of conserved glycyl residues in homologous proteins of known structure.

Published in:

Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 6, p. 843, doi. 10.1002/pro.2468

By:

Lakshmi, Balasubramanian;
Sinduja, Chandrasekaran;
Archunan, Govind;
Srinivasan, Narayanaswamy

Publication type:

Article

Exploring anti-malarial potential of FDA approved drugs: an in silico approach.

Published in:

Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-1937-2

By:

Ramakrishnan, Gayatri;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

The origins of the evolutionary signal used to predict protein-protein interactions.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 238, doi. 10.1186/1471-2148-12-238

By:

Swapna, Lakshmipuram S.;
Srinivasan, Narayanaswamy;
Robertson, David L.;
Lovell, Simon C.

Publication type:

Article

Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly.

Published in:

PLoS ONE, 2025, v. 20, n. 1, p. 1, doi. 10.1371/journal.pone.0317187

By:

Bheemireddy, Sneha;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Cover Image, Volume 93, Issue 1.

Published in:

Proteins, 2025, v. 93, n. 1, p. C1, doi. 10.1002/prot.26781

By:

Prabantu, Vasam Manjveekar;
Tandon, Himani;
Sandhya, Sankaran;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Comparison of structural networks across homologous proteins.

Published in:

Proteins, 2025, v. 93, n. 1, p. 267, doi. 10.1002/prot.26650

By:

Prabantu, Vasam Manjveekar;
Gadiyaram, Vasundhara;
Vishveshwara, Saraswathi;
Srinivasan, Narayanaswamy

Publication type:

Article

The alteration of structural network upon transient association between proteins studied using graph theory.

Published in:

Proteins, 2025, v. 93, n. 1, p. 217, doi. 10.1002/prot.26606

By:

Prabantu, Vasam Manjveekar;
Tandon, Himani;
Sandhya, Sankaran;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins.

Published in:

Proteins, 2025, v. 93, n. 1, p. 197, doi. 10.1002/prot.26581

By:

Sidhanta, Swayam Prakash Das;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Interfacial residues in protein–protein complexes are in the eyes of the beholder.

Published in:

Proteins, 2024, v. 92, n. 4, p. 509, doi. 10.1002/prot.26628

By:

Parvathy, Jayadevan;
Yazhini, Arangasamy;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

Pseudokinases repurpose flexibility signatures associated with the protein kinase fold for noncatalytic roles.

Published in:

Proteins, 2022, v. 90, n. 3, p. 747, doi. 10.1002/prot.26271

By:

Paul, Anindita;
Subhadarshini, Seemadri;
Srinivasan, Narayanaswamy

Publication type:

Article

Artificial protein sequences enable recognition of vicinal and distant protein functional relationships.

Published in:

Proteins, 2020, v. 88, n. 12, p. 1688, doi. 10.1002/prot.25986

By:

Kumar, Gayatri;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Genome‐wide and structural analyses of pseudokinases encoded in the genome of Arabidopsis thaliana provide functional insights.

Published in:

Proteins, 2020, v. 88, n. 12, p. 1620, doi. 10.1002/prot.25981

By:

Paul, Anindita;
Srinivasan, Narayanaswamy

Publication type:

Article

How good are comparative models in the understanding of protein dynamics?

Published in:

Proteins, 2020, v. 88, n. 7, p. 874, doi. 10.1002/prot.25879

By:

Yazhini, Arangasamy;
Srinivasan, Narayanaswamy

Publication type:

Article

Clustering of multi‐domain protein sequences.

Published in:

Proteins, 2018, v. 86, n. 7, p. 759, doi. 10.1002/prot.25510

By:

Mehrotra, Prachi;
Ami, Vimla Kany G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Deciphering common recognition principles of nucleoside mono/di and tri-phosphates binding in diverse proteins via structural matching of their binding sites.

Published in:

Proteins, 2017, v. 85, n. 9, p. 1699, doi. 10.1002/prot.25328

By:

Bhagavat, Raghu;
Srinivasan, Narayanaswamy;
Chandra, Nagasuma

Publication type:

Article

Resolving protein structure-function-binding site relationships from a binding site similarity network perspective.

Published in:

Proteins, 2017, v. 85, n. 7, p. 1319, doi. 10.1002/prot.25293

By:

Mudgal, Richa;
Srinivasan, Narayanaswamy;
Chandra, Nagasuma

Publication type:

Article

Comparative analyses of quaternary arrangements in homo-oligomeric proteins in superfamilies: Functional implications.

Published in:

Proteins, 2016, v. 84, n. 9, p. 1190, doi. 10.1002/prot.25065

By:

Sudha, Govindarajan;
Srinivasan, Narayanaswamy

Publication type:

Article

Cover Image, Volume 84, Issue 7.

Published in:

Proteins, 2016, v. 84, n. 7, p. C1, doi. 10.1002/prot.25067

By:

Kalaivani, Raju;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Conservation of structural fluctuations in homologous protein kinases and its implications on functional sites.

Published in:

Proteins, 2016, v. 84, n. 7, p. 957, doi. 10.1002/prot.25044

By:

Kalaivani, Raju;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Evolutionary and structural analyses of heterodimeric proteins composed of subunits with same fold.

Published in:

Proteins, 2015, v. 83, n. 10, p. 1766, doi. 10.1002/prot.24849

By:

Sudha, Govindarajan;
Naveenkumar, Nagarajan;
Srinivasan, Narayanaswamy

Publication type:

Article

Key challenges for the creation and maintenance of specialist protein resources.

Published in:

2015

By:

Holliday, Gemma L.;
Bairoch, Amos;
Bagos, Pantelis G.;
Chatonnet, Arnaud;
Craik, David J.;
Finn, Robert D.;
Henrissat, Bernard;
Landsman, David;
Manning, Gerard;
Nagano, Nozomi;
O'Donovan, Claire;
Pruitt, Kim D.;
Rawlings, Neil D.;
Saier, Milton;
Sowdhamini, Ramanathan;
Spedding, Michael;
Srinivasan, Narayanaswamy;
Vriend, Gert;
Babbitt, Patricia C.;
Bateman, Alex

Publication type:

Editorial

Accurate prediction of interfacial residues in two-domain proteins using evolutionary information: Implications for three-dimensional modeling.

Published in:

Proteins, 2014, v. 82, n. 7, p. 1219, doi. 10.1002/prot.24486

By:

Bhaskara, Ramachandra M.;
Padhi, Amrita;
Srinivasan, Narayanaswamy

Publication type:

Article

The <i>Escherichia coli</i> Phosphotyrosine Proteome Relates to Core Pathways and Virulence.

Published in:

PLoS Pathogens, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.ppat.1003403

By:

Hansen, Anne-Marie;
Chaerkady, Raghothama;
Sharma, Jyoti;
Díaz-Mejía, J. Javier;
Tyagi, Nidhi;
Renuse, Santosh;
Jacob, Harrys K. C.;
Pinto, Sneha M.;
Sahasrabuddhe, Nandini A.;
Kim, Min-Sik;
Delanghe, Bernard;
Srinivasan, Narayanaswamy;
Emili, Andrew;
Kaper, James B.;
Pandey, Akhilesh

Publication type:

Article

Cis- trans peptide variations in structurally similar proteins.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1369, doi. 10.1007/s00726-011-1211-9

By:

Joseph, Agnel;
Srinivasan, Narayanaswamy;
Brevern, Alexandre

Publication type:

Article

Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37473-y

By:

Tandon, Himani;
Sharma, Arun;
Sandhya, Sankaran;
Srinivasan, Narayanaswamy;
Singh, Ramandeep

Publication type:

Article

Structural and molecular basis of interaction of HCV non-structural protein 5A with human casein kinase 1α and PKR.

Published in:

BMC Structural Biology, 2012, v. 12, n. 1, p. 28, doi. 10.1186/1472-6807-12-28

By:

Sudha, Govindarajan;
Yamunadevi, Subburaj;
Tyagi, Nidhi;
Das, Saumitra;
Srinivasan, Narayanaswamy

Publication type:

Article

Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins.

Published in:

BMC Structural Biology, 2012, v. 12, n. 1, p. 6, doi. 10.1186/1472-6807-12-6

By:

Swapna, Lakshmipuram S.;
Mahajan, Swapnil;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures.

Published in:

BMC Structural Biology, 2010, v. 10, p. 17, doi. 10.1186/1472-6807-10-17

By:

Gadkari, Rupali A.;
Srinivasan, Narayanaswamy

Publication type:

Article

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-28

By:

Sandhya, Sankaran;
Pankaj, Barah;
Govind, Madabosse Kande;
Offmann, Bernard;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-343

By:

Gnanavel, Mutharasu;
Mehrotra, Prachi;
Rakshambikai, Ramaswamy;
Martin, Juliette;
Srinivasan, Narayanaswamy;
Bhaskara, Ramachandra M.

Publication type:

Article

AlignHUSH: Alignment of HMMs using structure and hydrophobicity information.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 275, doi. 10.1186/1471-2105-12-275

By:

Krishnadev, Oruganty;
Srinivasan, Narayanaswamy

Publication type:

Article

Synthesis and spectral studies of Ni(II) heterocyclic dithiocarbamates with S<sub>2</sub>PN chromophore: X-ray crystal structures of bis(1,2,3,4-tetrahydroquinolinecarbodithioato- S,S')nickel(II) and 1,2,3,4-tetrahydroquinolinecarbodithioato- S,S')(thiocyanato-N)(triphenylphosphine)nickel(II)

Published in:

Journal of Sulfur Chemistry, 2011, v. 32, n. 6, p. 583, doi. 10.1080/17415993.2011.628991

By:

Valarmathi, Panneerselvam;
Srinivasan, Narayanaswamy;
Thirumaran, Subbiah

Publication type:

Article