Works by Singh, Karam B.

Results: 78

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01168

By:

Sperschneider, Jana;
Williams, Angela H.;
Hane, James K.;
Singh, Karam B.;
Taylor, Jennifer M.

Publication type:

Article

Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.

Published in:

Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00372

By:

Sperschneider, Jana;
Singh, Karam B.;
Hua Ying;
Dodds, Peter N.;
Upadhyaya, Narayana M.;
Manners, John M.;
Taylor, Jennifer M.;
Gardiner, Donald M.

Publication type:

Article

A pan‐genome and chromosome‐length reference genome of narrow‐leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits.

Published in:

Plant Journal, 2022, v. 111, n. 5, p. 1252, doi. 10.1111/tpj.15885

By:

Garg, Gagan;
Kamphuis, Lars G.;
Bayer, Philipp E.;
Kaur, Parwinder;
Dudchenko, Olga;
Taylor, Candy M.;
Frick, Karen M.;
Foley, Rhonda C.;
Gao, Ling‐Ling;
Aiden, Erez Lieberman;
Edwards, David;
Singh, Karam B.

Publication type:

Article

The mitochondrial outer membrane AAA ATPase At OM66 affects cell death and pathogen resistance in Arabidopsis thaliana.

Published in:

Plant Journal, 2014, v. 80, n. 4, p. 709, doi. 10.1111/tpj.12665

By:

Zhang, Botao;
Van Aken, Olivier;
Thatcher, Louise;
De Clercq, Inge;
Duncan, Owen;
Law, Simon R.;
Murcha, Monika W.;
Merwe, Margaretha;
Seifi, Hamed Soren;
Carrie, Chris;
Cazzonelli, Christopher;
Radomiljac, Jordan;
Höfte, Monica;
Singh, Karam B.;
Van Breusegem, Frank;
Whelan, James

Publication type:

Article

Characterization and genetic dissection of resistance to spotted alfalfa aphid (Therioaphis trifolii) in Medicago truncatula.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 16, p. 5157, doi. 10.1093/jxb/ert305

By:

Kamphuis, Lars G.;
Lichtenzveig, Judith;
Peng, Kefan;
Guo, Su-Min;
Klingler, John P.;
Siddique, Kadambot H. M.;
Gao, Ling-Ling;
Singh, Karam B.

Publication type:

Article

Identification of distinct quantitative trait loci associated with defence against the closely related aphids Acyrthosiphon pisum and A. kondoi in Medicago truncatula.

Published in:

Journal of Experimental Botany, 2012, v. 63, n. 10, p. 3913, doi. 10.1093/jxb/ers084

By:

Guo, Su-Min;
Kamphuis, Lars G.;
Gao, Ling-Ling;
Klingler, John P.;
Lichtenzveig, Judith;
Edwards, Owain;
Singh, Karam B.

Publication type:

Article

A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid.

Published in:

Journal of Experimental Botany, 2009, v. 60, n. 14, p. 4115, doi. 10.1093/jxb/erp244

By:

Klingler, John P.;
Nair, Ramakrishnan M.;
Edwards, Owain R.;
Singh, Karam B.

Publication type:

Article

Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat.

Published in:

PLoS Pathogens, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.ppat.1010149

By:

John, Evan;
Jacques, Silke;
Phan, Huyen T. T.;
Liu, Lifang;
Pereira, Danilo;
Croll, Daniel;
Singh, Karam B.;
Oliver, Richard P.;
Tan, Kar-Chun

Publication type:

Article

ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.

Published in:

New Phytologist, 2018, v. 217, n. 4, p. 1764, doi. 10.1111/nph.14946

By:

Sperschneider, Jana;
Dodds, Peter N.;
Singh, Karam B.;
Taylor, Jennifer M.

Publication type:

Article

Editorial: Legumes for Global Food Security.

Published in:

2020

By:

Jimenez-Lopez, Jose C.;
Singh, Karam B.;
Clemente, Alfonso;
Nelson, Matthew N.;
Ochatt, Sergio;
Smith, Penelope M. C.

Publication type:

Editorial

The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress.

Published in:

Plant Journal, 2009, v. 58, n. 1, p. 53, doi. 10.1111/j.1365-313X.2008.03761.x

By:

Sappl, Pia G.;
Carroll, Adam J.;
Clifton, Rachael;
Lister, Ryan;
Whelan, James;
Harvey Millar, A.;
Singh, Karam B.

Publication type:

Article

The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations.

Published in:

Plant Journal, 2008, v. 55, n. 4, p. 580, doi. 10.1111/j.1365-313X.2008.03531.x

By:

Varma Penmetsa, R.;
Uribe, Pedro;
Anderson, Jonathan;
Lichtenzveig, Judith;
Gish, John-Charles;
Young Woo Nam;
Engstrom, Eric;
Kun Xu;
Sckisel, Gail;
Pereira, Mariana;
Jong Min Baek;
Lopez-Meyer, Melina;
Long, Sharon R.;
Harrison, Maria J.;
Singh, Karam B.;
Kiss, Gyorgy B.;
Cook, Douglas R.

Publication type:

Article

Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid.

Published in:

Plant Journal, 2003, v. 35, n. 3, p. 362, doi. 10.1046/j.1365-313X.2003.01812.x

By:

Kang, Hong-Gu;
Foley, Rhonda C.;
Oñate-Sánchez, Luis;
Lin, Chentao;
Singh, Karam B.

Publication type:

Article

Identification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5521-8

By:

DeBoer, Kathleen;
Melser, Su;
Sperschneider, Jana;
Kamphuis, Lars G.;
Garg, Gagan;
Gao, Ling-Ling;
Frick, Karen;
Singh, Karam B.

Publication type:

Article

Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8.

Published in:

PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004281

By:

Hane, James K.;
Anderson, Jonathan P.;
Williams, Angela H.;
Sperschneider, Jana;
Singh, Karam B.

Publication type:

Article

Transcriptome analysis reveals molecular mechanisms of sclerotial development in the rice sheath blight pathogen Rhizoctonia solani AG1-IA.

Published in:

Functional & Integrative Genomics, 2019, v. 19, n. 5, p. 743, doi. 10.1007/s10142-019-00677-0

By:

Shu, Canwei;
Zhao, Mei;
Anderson, Jonathan P.;
Garg, Gagan;
Singh, Karam B.;
Zheng, Wenbo;
Wang, Chenjiaozi;
Yang, Mei;
Zhou, Erxun

Publication type:

Article

The role of jasmonate signalling in quinolizidine alkaloid biosynthesis, wounding and aphid predation response in narrow-leafed lupin.

Published in:

Functional Plant Biology, 2019, v. 46, n. 5, p. 443, doi. 10.1071/FP18278

By:

Frick, Karen M.;
Foley, Rhonda C.;
Siddique, Kadambot H. M.;
Singh, Karam B.;
Kamphuis, Lars G.

Publication type:

Article

Plant-aphid interactions with a focus on legumes.

Published in:

Functional Plant Biology, 2013, v. 40, n. 12, p. 1271, doi. 10.1071/FP13090

By:

Kamphuis, Lars G.;
Zulak, Katherine;
Gao, Ling-Ling;
Anderson, Jonathan;
Singh, Karam B.

Publication type:

Article

Additive and epistatic interactions between AKR and AIN loci conferring bluegreen aphid resistance and hypersensitivity in Medicago truncatula.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 18, p. 4887, doi. 10.1093/jxb/erz222

By:

Kamphuis, Lars G;
Klingler, John P;
Jacques, Silke;
Gao, Ling-Ling;
Edwards, Owain R;
Singh, Karam B

Publication type:

Article

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1613, doi. 10.1093/gbe/evv092

By:

Sperschneider, Jana;
Gardiner, Donald M.;
Thatcher, Louise F.;
Lyons, Rebecca;
Singh, Karam B.;
Manners, John M.;
Taylor, Jennifer M.

Publication type:

Article

Reactive Oxygen Species Play a Role in the Infection of the Necrotrophic Fungi, Rhizoctonia solani in Wheat.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0152548

By:

Foley, Rhonda C.;
Kidd, Brendan N.;
Hane, James K.;
Anderson, Jonathan P.;
Singh, Karam B.

Publication type:

Article

Actinobacteria Warfare Against the Plant Pathogen Sclerotinia sclerotiorum: 2,4,6‐Trimethylpyridine Identified as a Bacterial Derived Volatile With Antifungal Activity.

Published in:

Microbial Biotechnology, 2025, v. 18, n. 3, p. 1, doi. 10.1111/1751-7915.70082

By:

Belt, Katharina;
Flematti, Gavin R.;
Bohman, Björn;
Chooi, Heng;
Roper, Margaret M.;
Dow, Lachlan;
Truman, Andrew W.;
Wilkinson, Barrie;
Singh, Karam B.;
Thatcher, Louise F.

Publication type:

Article

β-Conglutins' Unique Mobile Arm Is a Key Structural Domain Involved in Molecular Nutraceutical Properties of Narrow-Leafed Lupin (Lupinus angustifolius L.).

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7676, doi. 10.3390/ijms24087676

By:

Lima-Cabello, Elena;
Escudero-Feliu, Julia;
Peralta-Leal, Andreina;
Garcia-Fernandez, Pedro;
Siddique, Kadambot H. M.;
Singh, Karam B.;
Núñez, Maria I.;
León, Josefa;
Jimenez-Lopez, Jose C.

Publication type:

Article

Ethylene Is Not Essential for R-Gene Mediated Resistance but Negatively Regulates Moderate Resistance to Some Aphids in Medicago truncatula.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 13, p. 4657, doi. 10.3390/ijms21134657

By:

Zhang, Lijun;
Kamphuis, Lars G.;
Guo, Yanqiong;
Jacques, Silke;
Singh, Karam B.;
Gao, Ling-Ling

Publication type:

Article

Genetic Mapping of a Major Resistance Gene to Pea Aphid (Acyrthosipon pisum) in the Model Legume Medicago truncatula.

Published in:

International Journal of Molecular Sciences, 2016, v. 17, n. 8, p. 1224, doi. 10.3390/ijms17081224

By:

Kamphuis, Lars G.;
Su-Min Guo;
Ling-Ling Gao;
Singh, Karam B.

Publication type:

Article

Characterization of salicyclic acid-responsive, Arabidopsis Dof domain proteins: overexpression of OBP3 leads to growth defects.

Published in:

Plant Journal, 2000, v. 21, n. 4, p. 329, doi. 10.1046/j.1365-313x.2000.00678.x

By:

Hong-Gu Kang;
Singh, Karam B.

Publication type:

Article

A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defense-related genes.

Published in:

Plant Journal, 1999, v. 20, n. 1, p. 127, doi. 10.1046/j.1365-313X.1999.00575.x

By:

Kang, Hong-Gu;
Fang, Yiwen;
Singh, Karam B.

Publication type:

Article

The auxin, hydrogen peroxide and salicylic acid induced expression of the Arabidopsis GST6 promoter is mediated in part by an ocs element.

Published in:

Plant Journal, 1999, v. 19, n. 6, p. 667, doi. 10.1046/j.1365-313x.1999.00560.x

By:

Chen, Wenqiong;
Singh, Karam B

Publication type:

Article

The promoter of a H2O2-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding sites.

Published in:

Plant Journal, 1996, v. 10, n. 6, p. 955, doi. 10.1046/j.1365-313X.1996.10060955.x

By:

Chen, Wenqiong;
Chao, Gerald;
Singh, Karam B.

Publication type:

Article

Isolation and characterization of two related Arabidopsis ocs-element bZIP binding proteins.

Published in:

Plant Journal, 1993, v. 4, n. 4, p. 711, doi. 10.1046/j.1365-313X.1993.04040711.x

By:

Zhang, Bei;
Foley, Rhonda C.;
Singh, Karam B.

Publication type:

Article

Isolation of a maize bZlP protein subfamily: candidates for the ocs-element transcription factor.

Published in:

Plant Journal, 1993, v. 3, n. 5, p. 669

By:

Foley, Rhonda C.;
Grossman, Carol;
Ellis, Jeff G.;
Llewellyn, Danny J.;
Dennis, Elizabeth S.;
Peacock, W. James;
Singh, Karam B.

Publication type:

Article

Analysis of conglutin seed storage proteins across lupin species using transcriptomic, protein and comparative genomic approaches.

Published in:

BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0485-6

By:

Foley, Rhonda C.;
Jimenez-Lopez, Jose C.;
Kamphuis, Lars G.;
Hane, James K.;
Melser, Su;
Singh, Karam B.

Publication type:

Article

Identification and characterization of resistance to cowpea aphid (Aphis craccivora Koch) in Medicago truncatula.

Published in:

BMC Plant Biology, 2012, v. 12, n. 1, p. 101, doi. 10.1186/1471-2229-12-101

By:

Kamphuis, Lars G.;
Gao, Lingling;
Singh, Karam B.

Publication type:

Article

Identification and characterisation of seed storage protein transcripts from Lupinus angustifolius.

Published in:

BMC Plant Biology, 2011, v. 11, n. 1, p. 59, doi. 10.1186/1471-2229-11-59

By:

Foley, Rhonda C.;
Ling-Ling Gao;
Spriggs, Andrew;
Soo, Lena Y. C.;
Goggin, Danica E.;
Smith, Penelope M. C.;
Atkins, Craig A.;
Singh, Karam B.

Publication type:

Article

The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01123-z

By:

Sperschneider, Jana;
Jones, Ashley W.;
Nasim, Jamila;
Xu, Bo;
Jacques, Silke;
Zhong, Chengcheng;
Upadhyaya, Narayana M.;
Mago, Rohit;
Hu, Yiheng;
Figueroa, Melania;
Singh, Karam B.;
Stone, Eric A.;
Schwessinger, Benjamin;
Wang, Ming-Bo;
Taylor, Jennifer M.;
Dodds, Peter N.

Publication type:

Article

Transcriptome analysis reveals class IX ethylene response factors show specific up-regulation in resistant but not susceptible Medicago truncatula lines following infection with Rhizoctonia solani.

Published in:

European Journal of Plant Pathology, 2018, v. 152, n. 2, p. 549, doi. 10.1007/s10658-018-1492-x

By:

Anderson, Jonathan P.;
Kidd, Brendan N.;
Garg, Gagan;
Singh, Karam B.

Publication type:

Article

An RNAi supplemented diet as a reverse genetics tool to control bluegreen aphid, a major pest of legumes.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58442-4

By:

Jacques, Silke;
Reidy-Crofts, Jenny;
Sperschneider, Jana;
Kamphuis, Lars G.;
Gao, Ling-Ling;
Edwards, Owain R.;
Singh, Karam B.

Publication type:

Article

A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52444-7

By:

Jones, Darcy A. B.;
John, Evan;
Rybak, Kasia;
Phan, Huyen T. T.;
Singh, Karam B.;
Lin, Shao-Yu;
Solomon, Peter S.;
Oliver, Richard P.;
Tan, Kar-Chun

Publication type:

Article

E ffectorP: predicting fungal effector proteins from secretomes using machine learning.

Published in:

New Phytologist, 2016, v. 210, n. 2, p. 743, doi. 10.1111/nph.13794

By:

Sperschneider, Jana;
Gardiner, Donald M.;
Dodds, Peter N.;
Tini, Francesco;
Covarelli, Lorenzo;
Singh, Karam B.;
Manners, John M.;
Taylor, Jennifer M.

Publication type:

Article

Identification of potential early regulators of aphid resistance in Medicago truncatula via transcription factor expression profiling.

Published in:

New Phytologist, 2010, v. 186, n. 4, p. 980, doi. 10.1111/j.1469-8137.2010.03229.x

By:

Ling-Ling Gao;
Kamphuis, Lars G.;
Kakar, Klementina;
Edwards, Owain R.;
Udvardi, Michael K.;
Singh, Karam B.

Publication type:

Article

The Medicago truncatula reference accession A17 has an aberrant chromosomal configuration.

Published in:

New Phytologist, 2007, v. 174, n. 2, p. 299, doi. 10.1111/j.1469-8137.2007.02039.x

By:

Kamphuis, Lars G.;
Williams, Angela H.;
D'Souza, Nola K.;
Pfaff, Theo;
Ellwood, Simon R.;
Groves, Emma J.;
Singh, Karam B.;
Oliver, Richard P.;
Lichtenzveig, Judith

Publication type:

Article

Independent action and contrasting phenotypes of resistance genes against spotted alfalfa aphid and bluegreen aphid in Medicago truncatula.

Published in:

New Phytologist, 2007, v. 173, n. 3, p. 630, doi. 10.1111/j.1469-8137.2006.01939.x

By:

Klingler, John P.;
Edwards, Owain R.;
Singh, Karam B.

Publication type:

Article

TGA5 acts as a positive and TGA4 acts as a negative regulator of ocs element activity in Arabidopsis roots in response to defence signals

Published in:

FEBS Letters, 2004, v. 563, n. 1-3, p. 141, doi. 10.1016/S0014-5793(04)00288-1

By:

Foley, Rhonda C.;
Singh, Karam B.

Publication type:

Article

Narrow-leafed lupin ( Lupinus angustifolius L.) β-conglutin proteins modulate the insulin signaling pathway as potential type 2 diabetes treatment and inflammatory-related disease amelioration.

Published in:

Molecular Nutrition & Food Research, 2017, v. 61, n. 5, p. n/a, doi. 10.1002/mnfr.201600819

By:

Lima‐Cabello, Elena;
Alche, Victor;
Foley, Rhonda C.;
Andrikopoulos, Sofianos;
Morahan, Grant;
Singh, Karam B.;
Alche, Juan D.;
Jimenez‐Lopez, Jose C.

Publication type:

Article

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-807

By:

Sperschneider, Jana;
Gardiner, Donald M.;
Taylor, Jennifer M.;
Hane, James K.;
Singh, Karam B.;
Manners, John M.

Publication type:

Article

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi.

Published in:

PLoS Pathogens, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.ppat.1004806

By:

Sperschneider, Jana;
Dodds, Peter N.;
Gardiner, Donald M.;
Manners, John M.;
Singh, Karam B.;
Taylor, Jennifer M.

Publication type:

Article

The Arabidopsis altered in stress response2 is Impaired in Resistance to Root and Leaf Necrotrophic Fungal Pathogens.

Published in:

Plants (2223-7747), 2019, v. 8, n. 3, p. 60, doi. 10.3390/plants8030060

By:

Thatcher, Louise F.;
Singh, Karam B.

Publication type:

Article

The Arabidopsis RNA Polymerase II Carboxyl Terminal Domain (CTD) Phosphatase-Like1 (CPL1) is a biotic stress susceptibility gene.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31837-0

By:

Thatcher, Louise F.;
Foley, Rhonda;
Casarotto, Hayley J.;
Gao, Ling-Ling;
Kamphuis, Lars G.;
Melser, Su;
Singh, Karam B.

Publication type:

Article

Editorial: Legumes for global food security - volume II.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1273600

By:

Jimenez-Lopez, Jose C.;
Singh, Karam B.;
Clemente, Alfonso;
Czubinski, Jaroslaw;
Ochatt, Sergio;
Von Wettberg, Eric;
Smýkal, Petr

Publication type:

Article

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow‐leafed lupin (Lupinus angustifolius L.).

Published in:

Plant, Cell & Environment, 2019, v. 42, n. 1, p. 174, doi. 10.1111/pce.13320

By:

Taylor, Candy M.;
Kamphuis, Lars G.;
Zhang, Weilu;
Garg, Gagan;
Berger, Jens D.;
Mousavi‐Derazmahalleh, Mahsa;
Bayer, Philipp E.;
Edwards, David;
Singh, Karam B.;
Cowling, Wallace A.;
Nelson, Matthew N.

Publication type:

Article