Works matching AU Peilin Jia

Results: 123

MET Exon 14 Skipping in Non-Small Cell Lung Cancer.

Published in:

Oncologist, 2016, v. 21, n. 4, p. 481, doi. 10.1634/theoncologist.2015-0510

By:

Heist, Rebecca S.;
Shim, Hyo Sup;
Gingipally, Shalini;
Mino‐Kenudson, Mari;
Le, Long;
Gainor, Justin F.;
Zheng, Zongli;
Aryee, Martin;
Xia, Junfeng;
Jia, Peilin;
Jin, Hailing;
Zhao, Zhongming;
Pao, William;
Engelman, Jeffrey A.;
Iafrate, A. John

Publication type:

Article

Convergent roles of de novo mutations and common variants in schizophrenia in tissue-specific and spatiotemporal co-expression network.

Published in:

Translational Psychiatry, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41398-018-0154-2

By:

Jia, Peilin;
Chen, Xiangning;
Fanous, Ayman H.;
Zhao, Zhongming

Publication type:

Article

scGraph2Vec: a deep generative model for gene embedding augmented by graph neural network and single-cell omics data.

Published in:

GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae108

By:

Lin, Shiqi;
Jia, Peilin

Publication type:

Article

Editorial: Advanced Interpretable Machine Learning Methods for Clinical NGS Big Data of Complex Hereditary Diseases.

Published in:

2020

By:

Cai, Yudong;
Huang, Tao;
Jia, Peilin

Publication type:

Editorial

Integrated analysis of racial disparities in genomic architecture identifies a trans‐ancestry prognostic subtype in bladder cancer.

Published in:

Molecular Oncology, 2023, v. 17, n. 4, p. 564, doi. 10.1002/1878-0261.13360

By:

Zhang, Baifeng;
Jia, Peilin;
Wang, Jiayin;
Pei, Guangsheng;
Wang, Changxi;
Pei, Shimei;
Li, Xiangchun;
Zhao, Zhongming;
Yi, Xin;
Guan, Xin‐yuan;
Huang, Yi

Publication type:

Article

Multiple transcription factors contribute to inter-chromosomal interaction in yeast.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0643-1

By:

Dai, Yulin;
Li, Chao;
Pei, Guangsheng;
Dong, Xiao;
Ding, Guohui;
Zhao, Zhongming;
Li, Yixue;
Jia, Peilin

Publication type:

Article

An Integrative Transcriptomic and Methylation Approach for Identifying Differentially Expressed Circular RNAs Associated with DNA Methylation Change.

Published in:

Biomedicines, 2021, v. 9, n. 6, p. 657, doi. 10.3390/biomedicines9060657

By:

Xu, Tianyi;
Wang, LiPing;
Jia, Peilin;
Song, Xiaofeng;
Zhao, Zhongming

Publication type:

Article

A Method for Bridging Population-Specific Genotypes to Detect Gene Modules Associated with Alzheimer's Disease.

Published in:

Cells (2073-4409), 2022, v. 11, n. 14, p. N.PAG, doi. 10.3390/cells11142219

By:

Dai, Yulin;
Jia, Peilin;
Zhao, Zhongming;
Gottlieb, Assaf

Publication type:

Article

Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.603509

By:

Liu, Teng;
Jia, Peilin;
Fang, Bingliang;
Zhao, Zhongming

Publication type:

Article

Targeted next-generation sequencing of DNA regions proximal to a conserved GXGXXG signaling motif enables systematic discovery of tyrosine kinase fusions in cancer.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 20, p. 6985, doi. 10.1093/nar/gkq579

By:

Chmielecki, Juliann;
Peifer, Martin;
Jia, Peilin;
Socci, Nicholas D.;
Hutchinson, Katherine;
Viale, Agnes;
Zhao, Zhongming;
Thomas, Roman K.;
Pao, William

Publication type:

Article

Characterization of genome-wide association study data reveals spatiotemporal heterogeneity of mental disorders.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-00832-8

By:

Dai, Yulin;
O'Brien, Timothy D.;
Pei, Guangsheng;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palate.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0675-4

By:

Yan, Fangfang;
Dai, Yulin;
Iwata, Junichi;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

Dense module searching for gene networks associated with multiple sclerosis.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0674-5

By:

Manuel, Astrid M.;
Dai, Yulin;
Freeman, Leorah A.;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

MicroRNA-655-3p and microRNA-497-5p inhibit cell proliferation in cultured human lip cells through the regulation of genes related to human cleft lip.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12920-019-0535-2

By:

Gajera, Mona;
Desai, Neha;
Suzuki, Akiko;
Li, Aimin;
Zhang, Musi;
Jun, Goo;
Jia, Peilin;
Zhao, Zhongming;
Iwata, Junichi

Publication type:

Article

Network-based identification of critical regulators as putative drivers of human cleft lip.

Published in:

BMC Medical Genomics, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s12920-018-0458-3

By:

Li, Aimin;
Qin, Guimin;
Suzuki, Akiko;
Gajera, Mona;
Iwata, Junichi;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

Genome-Wide Meta-Analyses of FTND and TTFC Phenotypes.

Published in:

2020

By:

Chen, Jingchun;
Loukola, Anu;
Gillespie, Nathan A;
Peterson, Roseann;
Jia, Peilin;
Riley, Brien;
Maes, Hermine;
Dick, Daniella M;
Kendler, Kenneth S;
Damaj, M Imad;
Miles, Michael F;
Zhao, Zhongming;
Li, Ming D;
Vink, Jacqueline M;
Minica, Camelia C;
Willemsen, Gonneke;
Boomsma, Dorret I;
Qaiser, Beenish;
Madden, Pamela A F;
Korhonen, Tellervo

Publication type:

journal article

MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6238-4

By:

Suzuki, Akiko;
Yoshioka, Hiroki;
Summakia, Dima;
Desai, Neha G.;
Jun, Goo;
Jia, Peilin;
Loose, David S.;
Ogata, Kenichi;
Gajera, Mona V.;
Zhao, Zhongming;
Iwata, Junichi

Publication type:

Article

Investigation of multi-trait associations using pathway-based analysis of GWAS summary statistics.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5373-7

By:

Pei, Guangsheng;
Sun, Hua;
Dai, Yulin;
Liu, Xiaoming;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

Gene2vec: distributed representation of genes based on co-expression.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5370-x

By:

Du, Jingcheng;
Jia, Peilin;
Dai, Yulin;
Tao, Cui;
Zhao, Zhongming;
Zhi, Degui

Publication type:

Article

Quantification of multi-pathway metabolites related to folate metabolism and application in natural population with MTHFR C677T polymorphism.

Published in:

Analytical & Bioanalytical Chemistry, 2025, v. 417, n. 13, p. 2807, doi. 10.1007/s00216-024-05688-w

By:

Wang, Mengdie;
Zheng, Qiwen;
You, Lei;
Wang, Huihui;
Jia, Peilin;
Liu, Xinyu;
Zeng, Changqing;
Xu, Guowang

Publication type:

Article

Lung Cancer: One Disease or Many.

Published in:

Human Heredity, 2018, v. 83, n. 2, p. 65, doi. 10.1159/000488942

By:

O'Brien, Timothy D.;
Jia, Peilin;
aldrich, Melinda C.;
Zhao, Zhongming

Publication type:

Article

Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts.

Published in:

Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-00987-z

By:

Jiang, Shan;
Zhou, Daizhan;
Wang, Yin-Ying;
Jia, Peilin;
Wan, Chunling;
Li, Xingwang;
He, Guang;
Cao, Dongmei;
Jiang, Xiaoqian;
Kendler, Kenneth S.;
Tsuang, Ming;
Mize, Travis;
Wu, Jain-Shing;
Lu, Yimei;
He, Lin;
Chen, Jingchun;
Zhao, Zhongming;
Chen, Xiangning

Publication type:

Article

Identification of de novo mutations in prenatal neurodevelopment-associated genes in schizophrenia in two Han Chinese patient-sibling family-based cohorts.

Published in:

Translational Psychiatry, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41398-020-00987-z

By:

Jiang, Shan;
Zhou, Daizhan;
Wang, Yin-Ying;
Jia, Peilin;
Wan, Chunling;
Li, Xingwang;
He, Guang;
Cao, Dongmei;
Jiang, Xiaoqian;
Kendler, Kenneth S.;
Tsuang, Ming;
Mize, Travis;
Wu, Jain-Shing;
Lu, Yimei;
He, Lin;
Chen, Jingchun;
Zhao, Zhongming;
Chen, Xiangning

Publication type:

Article

A gene regulatory network approach harmonizes genetic and epigenetic signals and reveals repurposable drug candidates for multiple sclerosis.

Published in:

Human Molecular Genetics, 2023, v. 32, n. 6, p. 998, doi. 10.1093/hmg/ddac265

By:

Manuel, Astrid M;
Dai, Yulin;
Jia, Peilin;
Freeman, Leorah A;
Zhao, Zhongming

Publication type:

Article

Identifying candidate genes and drug targets for Alzheimer's disease by an integrative network approach using genetic and brain region-specific proteomic data.

Published in:

Human Molecular Genetics, 2022, v. 31, n. 19, p. 3341, doi. 10.1093/hmg/ddac124

By:

Liu, Andi;
Manuel, Astrid M;
Dai, Yulin;
Fernandes, Brisa S;
Enduru, Nitesh;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

Rewired Pathways and Disrupted Pathway Crosstalk in Schizophrenia Transcriptomes by Multiple Differential Coexpression Methods.

Published in:

Genes, 2021, v. 12, n. 5, p. 665, doi. 10.3390/genes12050665

By:

Yu, Hui;
Guo, Yan;
Chen, Jingchun;
Chen, Xiangning;
Jia, Peilin;
Zhao, Zhongming;
Zou, Quan

Publication type:

Article

scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells.

Published in:

Genes, 2017, v. 8, n. 12, p. 368, doi. 10.3390/genes8120368

By:

Yuan Cao;
Junjie Zhu;
Peilin Jia;
Zhongming Zhao

Publication type:

Article

Mega-analysis of Odds Ratio: A Convergent Method for a Deep Understanding of the Genetic Evidence in Schizophrenia.

Published in:

Schizophrenia Bulletin, 2019, v. 45, n. 3, p. 698, doi. 10.1093/schbul/sby085

By:

Jia, Peilin;
Chen, Xiangning;
Xie, Wei;
Kendler, Kenneth S;
Zhao, Zhongming

Publication type:

Article

Protein-Protein Interaction and Pathway Analyses of Top Schizophrenia Genes Reveal Schizophrenia Susceptibility Genes Converge on Common Molecular Networks and Enrichment of Nucleosome (Chromatin) Assembly Genes in Schizophrenia Susceptibility Loci.

Published in:

2014

By:

Luo, Xiongjian;
Huang, Liang;
Jia, Peilin;
Li, Ming;
Su, Bing;
Zhao, Zhongming;
Gan, Lin

Publication type:

Journal Article

Protein-Protein Interaction and Pathway Analyses of Top Schizophrenia Genes Reveal Schizophrenia Susceptibility Genes Converge on Common Molecular Networks and Enrichment of Nucleosome (Chromatin) Assembly Genes in Schizophrenia Susceptibility Loci.

Published in:

Schizophrenia Bulletin, 2014, v. 40, n. 1, p. 39, doi. 10.1093/schbul/sbt066

By:

Luo, Xiongjian;
Huang, Liang;
Jia, Peilin;
Li, Ming;
Su, Bing;
Zhao, Zhongming;
Gan, Lin

Publication type:

Article

PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 8, p. 1916, doi. 10.3390/ijms20081916

By:

Sprouse, Marc L.;
Welte, Thomas;
Boral, Debasish;
Liu, Haowen N.;
Yin, Wei;
Vishnoi, Monika;
Goswami-Sewell, Debalina;
Li, Lili;
Pei, Guangsheng;
Jia, Peilin;
Glitza-Oliva, Isabella C.;
Marchetti, Dario

Publication type:

Article

Targeted activation of CREB in reactive astrocytes is neuroprotective in focal acute cortical injury.

Published in:

Glia (0894-1491), 2016, v. 64, n. 5, p. 853, doi. 10.1002/glia.22969

By:

Pardo, Luis;
Schlüter, Agatha;
Valor, Luis M.;
Barco, Angel;
Giralt, Mercedes;
Golbano, Arantxa;
Hidalgo, Juan;
Jia, Peilin;
Zhao, Zhongming;
Jové, Mariona;
Portero‐Otin, Manuel;
Ruiz, Montserrat;
Giménez‐Llort, Lydia;
Masgrau, Roser;
Pujol, Aurora;
Galea, Elena

Publication type:

Article

Comprehensive assessment of long-read sequencing platforms and calling algorithms for detection of copy number variation.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae441

By:

Yuan, Na;
Jia, Peilin

Publication type:

Article

Benchmark of embedding-based methods for accurate and transferable prediction of drug response.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad098

By:

Jia, Peilin;
Hu, Ruifeng;
Zhao, Zhongming

Publication type:

Article

Distinct effect of prenatal and postnatal brain expression across 20 brain disorders and anthropometric social traits: a systematic study of spatiotemporal modularity.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab214

By:

Jia, Peilin;
Manuel, Astrid M;
Fernandes, Brisa S;
Dai, Yulin;
Zhao, Zhongming

Publication type:

Article

Deep4mC: systematic assessment and computational prediction for DNA N4-methylcytosine sites by deep learning.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa099

By:

Xu, Haodong;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA–TF–gene network approach in humans and mice.

Published in:

Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1465, doi. 10.1093/bib/bbz082

By:

Li, Aimin;
Jia, Peilin;
Mallik, Saurav;
Fei, Rong;
Yoshioka, Hiroki;
Suzuki, Akiko;
Iwata, Junichi;
Zhao, Zhongming

Publication type:

Article

Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor.

Published in:

Briefings in Bioinformatics, 2019, p. 1502, doi. 10.1093/bib/bby020

By:

Sun, Hua;
Kim, Pora;
Jia, Peilin;
Park, Ae Kyung;
Liang, Han;
Zhao, Zhongming

Publication type:

Article

Translational bioinformatics in mental health: open access data sources and computational biomarker discovery.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 3, p. 842, doi. 10.1093/bib/bbx157

By:

Tenenbaum, Jessica D;
Bhuvaneshwar, Krithika;
Gagliardi, Jane P;
Hollis, Kate Fultz;
Jia, Peilin;
Ma, Liang;
Nagarajan, Radhakrishnan;
Rakesh, Gopalkumar;
Subbian, Vignesh;
Visweswaran, Shyam;
Zhao, Zhongming;
Rozenblit, Leon

Publication type:

Article

Kinase impact assessment in the landscape of fusion genes that retain kinase domains: a pan-cancer study.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 3, p. 450, doi. 10.1093/bib/bbw127

By:

Kim, Pora;
Peilin Jia;
Zhongming Zhao

Publication type:

Article

Impacts of somatic mutations on gene expression: an association perspective.

Published in:

Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 413, doi. 10.1093/bib/bbw037

By:

Peilin Jia;
Zhongming Zhao

Publication type:

Article

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 4, p. 506, doi. 10.1093/bib/bbs044

By:

Wang, Qingguo;
Xia, Junfeng;
Jia, Peilin;
Pao, William;
Zhao, Zhongming

Publication type:

Article

Causal Inference of Genetic Variants and Genes in Amyotrophic Lateral Sclerosis.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.917142

By:

Pan, Siyu;
Liu, Xinxuan;
Liu, Tianzi;
Zhao, Zhongming;
Dai, Yulin;
Wang, Yin-Ying;
Jia, Peilin;
Liu, Fan

Publication type:

Article

Rewired m<sup>6</sup>A epitranscriptomic networks link mutant p53 to neoplastic transformation.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37398-9

By:

Xu, An;
Liu, Mo;
Huang, Mo-Fan;
Zhang, Yang;
Hu, Ruifeng;
Gingold, Julian A.;
Liu, Ying;
Zhu, Dandan;
Chien, Chian-Shiu;
Wang, Wei-Chen;
Liao, Zian;
Yuan, Fei;
Hsu, Chih-Wei;
Tu, Jian;
Yu, Yao;
Rosen, Taylor;
Xiong, Feng;
Jia, Peilin;
Yang, Yi-Ping;
Bazer, Danielle A.

Publication type:

Article

Genome-wide association study of HIV-associated neurocognitive disorder (HAND): A CHARTER group study.

Published in:

American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2017, v. 174, n. 4, p. 413, doi. 10.1002/ajmg.b.32530

By:

Jia, Peilin;
Zhao, Zhongming;
Hulgan, Todd;
Bush, William S.;
Samuels, David C.;
Bloss, Cinnamon S.;
Heaton, Robert K.;
Ellis, Ronald J.;
Schork, Nicholas;
Marra, Christina M.;
Collier, Ann C.;
Clifford, David B.;
Gelman, Benjamin B.;
Sacktor, Ned;
Morgello, Susan;
Simpson, David M.;
McCutchan, J. Allen;
Barnholtz‐Sloan, Jill S.;
Franklin, Donald R.;
Rosario, Debralee

Publication type:

Article

Studying Tumorigenesis through Network Evolution and Somatic Mutational Perturbations in the Cancer Interactome.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 8, p. 2156, doi. 10.1093/molbev/msu167

By:

Cheng, Feixiong;
Jia, Peilin;
Wang, Quan;
Lin, Chen-Ching;
Li, Wen-Hsiung;
Zhao, Zhongming

Publication type:

Article

6mA-Finder: a novel online tool for predicting DNA N6-methyladenine sites in genomes.

Published in:

Bioinformatics, 2020, v. 36, n. 10, p. 3257, doi. 10.1093/bioinformatics/btaa113

By:

Xu, Haodong;
Hu, Ruifeng;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

CNet: a multi-omics approach to detecting clinically associated, combinatory genomic signatures.

Published in:

Bioinformatics, 2019, v. 35, n. 24, p. 5207, doi. 10.1093/bioinformatics/btz441

By:

Jia, Peilin;
Pei, Guangsheng;
Zhao, Zhongming

Publication type:

Article

deTS: tissue-specific enrichment analysis to decode tissue specificity.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3842, doi. 10.1093/bioinformatics/btz138

By:

Pei, Guangsheng;
Dai, Yulin;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

EW_dmGWAS: edge-weighted dense module search for genome-wide association studies and gene expression profiles.

Published in:

Bioinformatics, 2015, v. 31, n. 15, p. 2591, doi. 10.1093/bioinformatics/btv150

By:

Quan Wang;
Hui Yu;
Zhongming Zhao;
Peilin Jia

Publication type:

Article