Works by Grenfell, Bryan T.

Results: 92

Absolute Humidity and the Seasonal Onset of Influenza in the Continental United States.

Published in:

PLoS Biology, 2010, v. 8, n. 2, p. 1, doi. 10.1371/journal.pbio.1000316

By:

Shaman, Jeffrey;
Pitzer, Virginia E.;
Viboud, Cécile;
Grenfell, Bryan T.;
Lipsitch, Marc

Publication type:

Article

Intracellular Demography and the Dynamics of Salmonella enterica Infections.

Published in:

PLoS Biology, 2006, v. 4, n. 11, p. 2091, doi. 10.1371/journal.pbio.0040349

By:

Brown, Sam P.;
Cornell, Stephen J.;
Sheppard, Mark;
Grant, Andrew J.;
Maskell, Duncan J.;
Grenfell, Bryan T.;
Mastroeni, Pietro

Publication type:

Article

Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses.

Published in:

PLoS Biology, 2005, v. 3, n. 9, p. 1579, doi. 10.1371/journal.pbio.0030300

By:

Holmes, Edward C.;
Ghedin, Elodie;
Miller, Naomi;
Taylor, Jill;
Yiming Bao;
St. George, Kirsten;
Grenfell, Bryan T.;
Salzberg, Steven L.;
Fraser, Claire M.;
Lipman, David J.;
Taubenberger, Jeffery K.

Publication type:

Article

Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses.

Published in:

PLoS Biology, 2005, v. 3, n. 7, p. 1, doi. 10.1371/journal.pbio.0030300

By:

Holmes, Edward C;
Ghedin, Elodie;
Miller, Naomi;
Taylor, Jill;
Bao, Yiming;
St George, Kirsten;
Grenfell, Bryan T;
Salzberg, Steven L;
Fraser, Claire M;
Lipman, David J;
Taubenberger, Jeffery K

Publication type:

Article

The Genesis and Spread of Reassortment Human Influenza A/H3N2 Viruses Conferring Adamantane Resistance.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 8, p. 1811, doi. 10.1093/molbev/msm103

By:

Simonsen, Lone;
Viboud, Cécile;
Grenfell, Bryan T.;
Dushoff, Jonathan;
Jennings, Lance;
Smit, Marita;
Macken, Catherine;
Hata, Mami;
Gog, Julia;
Miller, Mark A.;
Holmes, Edward C.

Publication type:

Article

Estimating Drivers of Autochthonous Transmission of Chikungunya Virus in its Invasion of the Americas.

Published in:

PLoS Currents, 2015, p. 1, doi. 10.1371/currents.outbreaks.a4c7b6ac10e0420b1788c9767946d1fc

By:

Perkins, T. Alex;
Metcalf, C. Jessica E.;
Grenfell, Bryan T.;
Tatem, Andrew J.

Publication type:

Article

The dynamics of measles in sub-Saharan Africa.

Published in:

Nature, 2008, v. 451, n. 7179, p. 679, doi. 10.1038/nature06509

By:

Ferrari, Matthew J.;
Grais, Rebecca F.;
Bharti, Nita;
Conlan, Andrew J. K.;
Bjørnstad, Ottar N.;
Wolfson, Lara J.;
Guerin, Philippe J.;
Djibo, Ali;
Grenfell, Bryan T.

Publication type:

Article

Veterinary epidemiology: Vaccination strategies for foot-and-mouth disease (reply).

Published in:

Nature, 2007, v. 445, n. 7128, p. 12, doi. 10.1038/nature05605

By:

Tildesley, Michael J.;
Savill, Nicholas J.;
Shaw, Darren J.;
Deardon, Rob;
Brooks, Stephen P.;
Woolhouse, Mark E. J.;
Grenfell, Bryan T.;
Keeling, Matt J.

Publication type:

Article

Optimal reactive vaccination strategies for a foot-and-mouth outbreak in the UK.

Published in:

Nature, 2006, v. 440, n. 7080, p. 83, doi. 10.1038/nature04324

By:

Tildesley, Michael J.;
Savill, Nicholas J.;
Shaw, Darren J.;
Deardon, Rob;
Brooks, Stephen P.;
Woolhouse, Mark E. J.;
Grenfell, Bryan T.;
Keeling, Matt J.

Publication type:

Article

Planning for smallpox outbreaks.

Published in:

Nature, 2003, v. 425, n. 6959, p. 681, doi. 10.1038/nature02007

By:

Ferguson, Neil M.;
Keeling, Matt J.;
Edmunds, W. John;
Gani, Raymond;
Grenfell, Bryan T.;
Anderson, Roy M.;
Leach, Steve

Publication type:

Article

Predicting the Impact of Vaccination on the Transmission Dynamics of Typhoid in South Asia: A Mathematical Modeling Study.

Published in:

PLoS Neglected Tropical Diseases, 2014, v. 8, n. 1, p. 1, doi. 10.1371/journal.pntd.0002642

By:

Pitzer, Virginia E.;
Bowles, Cayley C.;
Baker, Stephen;
Kang, Gagandeep;
Balaji, Veeraraghavan;
Farrar, Jeremy J.;
Grenfell, Bryan T.

Publication type:

Article

Predicting the Impact of Vaccination on the Transmission Dynamics of Typhoid in South Asia: A Mathematical Modeling Study.

Published in:

PLoS Neglected Tropical Diseases, 2014, v. 8, n. 1, p. 1, doi. 10.1371/journal.pntd.0002642

By:

Pitzer, Virginia E.;
Bowles, Cayley C.;
Baker, Stephen;
Kang, Gagandeep;
Balaji, Veeraraghavan;
Farrar, Jeremy J.;
Grenfell, Bryan T.

Publication type:

Article

Urban Cholera Transmission Hotspots and Their Implications for Reactive Vaccination: Evidence from Bissau City, Guinea Bissau.

Published in:

PLoS Neglected Tropical Diseases, 2012, v. 6, n. 11, p. 1, doi. 10.1371/journal.pntd.0001901

By:

Azman, Andrew S.;
Luquero, Francisco J.;
Rodrigues, Amabelia;
Palma, Pedro Pablo;
Grais, Rebecca F.;
Banga, Cunhate Na;
Grenfell, Bryan T.;
Lessler, Justin

Publication type:

Article

Urban Cholera Transmission Hotspots and Their Implications for Reactive Vaccination: Evidence from Bissau City, Guinea Bissau

Published in:

2012

By:

Azman, Andrew S.;
Luquero, Francisco J.;
Rodrigues, Amabelia;
Palma, Pedro Pablo;
Grais, Rebecca F.;
Banga, Cunhate Na;
Grenfell, Bryan T.;
Lessler, Justin

Publication type:

Case Study

Optimal sampling frequency and site selection for wastewater and environmental surveillance of infectious pathogens: A value of information assessment.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pcbi.1013190

By:

Impalli, Isabella;
Bergland, Erik;
Saad-Roy, Chadi M.;
Grenfell, Bryan T.;
Levin, Simon A.;
Larsson, D. G. Joakim;
Laxminarayan, Ramanan

Publication type:

Article

Deep neural networks for endemic measles dynamics: Comparative analysis and integration with mechanistic models.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 11, p. 1, doi. 10.1371/journal.pcbi.1012616

By:

Madden, Wyatt G.;
Jin, Wei;
Lopman, Benjamin;
Zufle, Andreas;
Dalziel, Benjamin;
E. Metcalf, C. Jessica;
Grenfell, Bryan T.;
Lau, Max S. Y.

Publication type:

Article

A mechanistic spatio-temporal framework for modelling individual-to-individual transmission—With an application to the 2014-2015 West Africa Ebola outbreak.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005798

By:

Lau, Max S. Y.;
Gibson, Gavin J.;
Adrakey, Hola;
McClelland, Amanda;
Riley, Steven;
Zelner, Jon;
Streftaris, George;
Funk, Sebastian;
Metcalf, Jessica;
Dalziel, Benjamin D.;
Grenfell, Bryan T.

Publication type:

Article

Human mobility and the spatial transmission of influenza in the United States.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005382

By:

Charu, Vivek;
Zeger, Scott;
Gog, Julia;
Bjørnstad, Ottar N.;
Kissler, Stephen;
Simonsen, Lone;
Grenfell, Bryan T.;
Viboud, Cécile

Publication type:

Article

Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005204

By:

Subramanian, Rahul;
Graham, Andrea L.;
Grenfell, Bryan T.;
Arinaminpathy, Nimalan

Publication type:

Article

Impact on Epidemic Measles of Vaccination Campaigns Triggered by Disease Outbreaks or Serosurveys: A Modeling Study.

Published in:

2016

By:

Lessler, Justin;
Metcalf, C. Jessica E.;
Cutts, Felicity T.;
Grenfell, Bryan T.

Publication type:

journal article

Correction: Routine Pediatric Enterovirus 71 Vaccination in China: a Cost-Effectiveness Analysis.

Published in:

2016

By:

Wu, Joseph T.;
Jit, Mark;
Zheng, Yaming;
Leung, Kathy;
Xing, Weijia;
Yang, Juan;
Liao, Qiaohong;
Cowling, Benjamin J.;
Yang, Bingyi;
Lau, Eric H. Y.;
Takahashi, Saki;
Farrar, Jeremy J.;
Grenfell, Bryan T.;
Leung, Gabriel M.;
Yu, Hongjie

Publication type:

corrected article

Routine Pediatric Enterovirus 71 Vaccination in China: a Cost-Effectiveness Analysis.

Published in:

2016

By:

Wu, Joseph T.;
Jit, Mark;
Zheng, Yaming;
Leung, Kathy;
Xing, Weijia;
Yang, Juan;
Liao, Qiaohong;
Cowling, Benjamin J.;
Yang, Bingyi;
Lau, Eric H. Y.;
Takahashi, Saki;
Farrar, Jeremy J.;
Grenfell, Bryan T.;
Leung, Gabriel M.;
Yu, Hongjie

Publication type:

journal article

Hand, Foot, and Mouth Disease in China: Modeling Epidemic Dynamics of Enterovirus Serotypes and Implications for Vaccination.

Published in:

2016

By:

Takahashi, Saki;
Liao, Qiaohong;
Van Boeckel, Thomas P.;
Xing, Weijia;
Sun, Junling;
Hsiao, Victor Y.;
Metcalf, C. Jessica E.;
Chang, Zhaorui;
Liu, Fengfeng;
Zhang, Jing;
Wu, Joseph T.;
Cowling, Benjamin J.;
Leung, Gabriel M.;
Farrar, Jeremy J.;
van Doorn, H. Rogier;
Grenfell, Bryan T.;
Yu, Hongjie

Publication type:

journal article

Measuring the performance of vaccination programs using cross-sectional surveys: a likelihood framework and retrospective analysis.

Published in:

2011

By:

Lessler, Justin;
Metcalf, C. Jessica E.;
Grais, Rebecca F.;
Luquero, Francisco J.;
Cummings, Derek A. T.;
Grenfell, Bryan T.

Publication type:

journal article

Air Travel and the Spread of Influenza: Important Caveats.

Published in:

2006

By:

Viboud, Cécile;
Miller, Mark A.;
Grenfell, Bryan T.;
Bjørnstad, Ottar N.;
Simonsen, Lone

Publication type:

Letter

DYNAMICS OF MEASLES EPIDEMICS: SCALING NOISE, DETERMINISM, AND PREDICTABILITY WITH THE TSIR MODEL.

Published in:

Ecological Monographs, 2002, v. 72, n. 2, p. 185, doi. 10.1890/0012-9615(2002)072[0185:DOMESN]2.0.CO;2

By:

Grenfell, Bryan T.;
Brørnstad, Ottar N.;
Finkenst&aoml;dt, B&aoml;rbel F.

Publication type:

Article

DYNAMICS OF MEASLES EPIDEMICS: ESTIMATING SCALING OF TRANSMISSION RATES USING A TIME SERIES SIR MODEL.

Published in:

Ecological Monographs, 2002, v. 72, n. 2, p. 169, doi. 10.2307/3100023

By:

Bjørnstad, Ottar N.;
Finkenst&aoml;dt, B&aoml;rbel F.;
Grenfell, Bryan T.

Publication type:

Article

Modeling the impact of COVID‐19 nonpharmaceutical interventions on respiratory syncytial virus transmission in South Africa.

Published in:

Influenza & Other Respiratory Viruses, 2023, v. 17, n. 12, p. 1, doi. 10.1111/irv.13229

By:

Bents, Samantha J.;
Viboud, Cécile;
Grenfell, Bryan T.;
Hogan, Alexandra B.;
Tempia, Stefano;
von Gottberg, Anne;
Moyes, Jocelyn;
Walaza, Sibongile;
Hansen, Chelsea;
Cohen, Cheryl;
Baker, Rachel E.

Publication type:

Article

Age-Specific Risks of Tuberculosis Infection From Household and Community Exposures and Opportunities for Interventions in a High-Burden Setting.

Published in:

American Journal of Epidemiology, 2014, v. 180, n. 8, p. 853, doi. 10.1093/aje/kwu192

By:

Zelner, Jonathan L.;
Murray, Megan B.;
Becerra, Mercedes C.;
Galea, Jerome;
Lecca, Leonid;
Calderon, Roger;
Yataco, Rosa;
Contreras, Carmen;
Zhang, Zibiao;
Grenfell, Bryan T.;
Cohen, Ted

Publication type:

Article

Spatial variation of Anopheles-transmitted Wuchereria bancrofti and Plasmodium falciparum infection densities in Papua New Guinea.

Published in:

Filaria Journal, 2003, v. 2, p. 1

By:

Alexander, Neal D.;
Moyeed, Rana A.;
Hyun, Phil J.;
Dimber, Zachary B.;
Bockarie, Moses J.;
Stander, Julian;
Grenfell, Bryan T.;
Kazura, James W.;
Alpers, Michael P.

Publication type:

Article

Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 2, p. 1, doi. 10.1371/journal.pcbi.1010896

By:

Nielsen, Bjarke Frost;
Saad-Roy, Chadi M.;
Li, Yimei;
Sneppen, Kim;
Simonsen, Lone;
Viboud, Cécile;
Levin, Simon A.;
Grenfell, Bryan T.

Publication type:

Article

Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.pcbi.1010251

By:

Lau, Max S. Y.;
Becker, Alex;
Madden, Wyatt;
Waller, Lance A.;
Metcalf, C. Jessica E.;
Grenfell, Bryan T.

Publication type:

Article

Application of a forecasting model to mitigate the consequences of unexpected RSV surge: Experience from the post-COVID-19 2021/22 winter season in a major metropolitan centre, Lyon, France.

Published in:

Journal of Global Health, 2023, v. 13, p. 1, doi. 10.7189/jogh.13.04007

By:

Casalegno, Jean-Sebastien;
Bents, Samantha;
Paget, John;
Gillet, Yves;
Ploin, Dominique;
Javouhey, Etienne;
Lina, Bruno;
Morfin, Florence;
Grenfell, Bryan T.;
Baker, Rachel E.

Publication type:

Article

Publisher Correction: Long-term measles antibody profiles following different vaccine schedules in China, a longitudinal study.

Published in:

2023

By:

Wang, Qianli;
Wang, Wei;
Winter, Amy K.;
Zhan, Zhifei;
Ajelli, Marco;
Trentini, Filippo;
Wang, Lili;
Li, Fangcai;
Yang, Juan;
Xiang, Xingyu;
Liao, Qiaohong;
Zhou, Jiaxin;
Guo, Jinxin;
Yan, Xuemei;
Liu, Nuolan;
Metcalf, C. Jessica E.;
Grenfell, Bryan T.;
Yu, Hongjie

Publication type:

Correction Notice

Long-term measles antibody profiles following different vaccine schedules in China, a longitudinal study.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37407-x

By:

Wang, Qianli;
Wang, Wei;
Winter, Amy K.;
Zhan, Zhifei;
Ajelli, Marco;
Trentini, Filippo;
Wang, Lili;
Li, Fangcai;
Yang, Juan;
Xiang, Xingyu;
Liao, Qiaohong;
Zhou, Jiaxin;
Guo, Jinxin;
Yan, Xuemei;
Liu, Nuolan;
Metcalf, C. Jessica E.;
Grenfell, Bryan T.;
Yu, Hongjie

Publication type:

Article

Correction: Changes in historical typhoid transmission across 16 U.S. cities, 1889–1931: Quantifying the impact of investments in water and sewer infrastructures.

Published in:

2021

By:

Phillips, Maile T.;
Owers, Katharine A.;
Grenfell, Bryan T.;
Pitzer, Virginia E.

Publication type:

Correction Notice

Analysis of multi-level spatial data reveals strong synchrony in seasonal influenza epidemics across Norway, Sweden, and Denmark.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197519

By:

Morris, Sinead E.;
Freiesleben de Blasio, Birgitte;
Viboud, Cécile;
Wesolowski, Amy;
Bjørnstad, Ottar N.;
Grenfell, Bryan T.

Publication type:

Article

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0185528

By:

Becker, Alexander D.;
Grenfell, Bryan T.

Publication type:

Article

The impact of HCV therapy in a high HIV-HCV prevalence population: A modeling study on people who inject drugs in Ho Chi Minh City, Vietnam.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177195

By:

Birger, Ruthie B.;
Le, Thuy;
Kouyos, Roger D.;
Grenfell, Bryan T.;
Hallett, Timothy B.

Publication type:

Article

Topographic determinants of foot and mouth disease transmission in the UK 2001 epidemic.

Published in:

BMC Veterinary Research, 2006, v. 2, p. 1

By:

Savill, Nicholas J.;
Shaw, Darren J.;
Deardon, Rob;
Tildesley, Michael J.;
Keeling, Matthew J.;
Woolhouse, Mark E. J.;
Brooks, Stephen P.;
Grenfell, Bryan T.

Publication type:

Article

Bacillus Calmette-Guérin and Isoniazid Preventive Therapy Protect Contacts of Patients with Tuberculosis.

Published in:

American Journal of Respiratory & Critical Care Medicine, 2014, v. 189, n. 7, p. 853, doi. 10.1164/rccm.201310-1896OC

By:

Zelner, Jonathan L.;
Murray, Megan B.;
Becerra, Mercedes C.;
Galea, Jerome;
Lecca, Leonid;
Calderon, Roger;
Yataco, Rosa;
Contreras, Carmen;
Zibiao Zhang;
Grenfell, Bryan T.;
Cohen, Ted

Publication type:

Article

Modeling the measles paradox reveals the importance of cellular immunity in regulating viral clearance.

Published in:

PLoS Pathogens, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.ppat.1007493

By:

Morris, Sinead E.;
Yates, Andrew J.;
de Swart, Rik L.;
de Vries, Rory D.;
Mina, Michael J.;
Nelson, Ashley N.;
Lin, Wen-Hsuan W.;
Kouyos, Roger D.;
Griffin, Diane E.;
Grenfell, Bryan T.

Publication type:

Article

Markets as drivers of selection for highly virulent poultry pathogens.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-44777-3

By:

Sheen, Justin K.;
Rasambainarivo, Fidisoa;
Saad-Roy, Chadi M.;
Grenfell, Bryan T.;
Metcalf, C. Jessica E.

Publication type:

Article

Tensor decomposition for infectious disease incidence data.

Published in:

Methods in Ecology & Evolution, 2020, v. 11, n. 12, p. 1690, doi. 10.1111/2041-210X.13480

By:

Korevaar, Hannah;
Metcalf, C. Jessica;
Grenfell, Bryan T.;
Freckleton, Robert

Publication type:

Article

Modeling the Impact of Interventions Along the HIV Continuum of Care in Newark, New Jersey.

Published in:

Clinical Infectious Diseases, 2014, v. 58, n. 2, p. 274, doi. 10.1093/cid/cit687

By:

Birger, Ruthie B.;
Hallett, Timothy B.;
Sinha, Anushua;
Grenfell, Bryan T.;
Hodder, Sally L.

Publication type:

Article

Environmental Drivers of the Spatiotemporal Dynamics of Respiratory Syncytial Virus in the United States.

Published in:

PLoS Pathogens, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.ppat.1004591

By:

Pitzer, Virginia E.;
Viboud, Cécile;
Alonso, Wladimir J.;
Wilcox, Tanya;
Metcalf, C. Jessica;
Steiner, Claudia A.;
Haynes, Amber K.;
Grenfell, Bryan T.

Publication type:

Article

Contact Heterogeneity, Rather Than Transmission Efficiency, Limits the Emergence and Spread of Canine Influenza Virus.

Published in:

PLoS Pathogens, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.ppat.1004455

By:

Dalziel, Benjamin D.;
Huang, Kai;
Geoghegan, Jemma L.;
Arinaminpathy, Nimalan;
Dubovi, Edward J.;
Grenfell, Bryan T.;
Ellner, Stephen P.;
Holmes, Edward C.;
Parrish, Colin R.

Publication type:

Article

Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs.

Published in:

PLoS Pathogens, 2012, v. 8, n. 5, p. 1, doi. 10.1371/journal.ppat.1002730

By:

Murcia, Pablo R.;
Hughes, Joseph;
Battista, Patrizia;
Lloyd, Lucy;
Baillie, Gregory J.;
Ramirez-Gonzalez, Ricardo H.;
Ormond, Doug;
Oliver, Karen;
Elton, Debra;
Mumford, Jennifer A.;
Caccamo, Mario;
Kellam, Paul;
Grenfell, Bryan T.;
Holmes, Edward C.;
Wood, James L. N.

Publication type:

Article

Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus.

Published in:

PLoS Pathogens, 2006, v. 2, n. 12, p. 1144, doi. 10.1371/journal.ppat.0020125

By:

Nelson, Martha I.;
Simonsen, Lone;
Viboud, Cecile;
Miller, Mark A.;
Taylor, Jill;
St. George, Kirsten;
Griesemer, Sara B.;
Ghedi, Elodie;
Sengamalay, Naomi A.;
Spiro, David J.;
Volkov, Igor;
Grenfell, Bryan T.;
Lipman, David J.;
Taubenberger, Jeffery K.;
Holmes, Edward C.

Publication type:

Article

Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread.

Published in:

PLoS Computational Biology, 2021, p. 1, doi. 10.1371/journal.pcbi.1009127

By:

Giles, John R.;
Cummings, Derek AT;
Grenfell, Bryan T.;
Tatem, Andrew J.;
Erbach-Schoenberg, Elisabeth zu;
Metcalf, CJE;
Wesolowski, Amy

Publication type:

Article