Works matching AU Diehl, Alexander

Results: 44
    1

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Article
    2

    flowCL: ontology-based cell population labelling in flow cytometry.

    Published in:
    2015
    By:
    • Courtot, Mélanie;
    • Meskas, Justin;
    • Diehl, Alexander D.;
    • Droumeva, Radina;
    • Gottardo, Raphael;
    • Jalali, Adrin;
    • Taghiyar, Mohammad Jafar;
    • Maecker, Holden T.;
    • McCoy, J. Philip;
    • Ruttenberg, Alan;
    • Scheuermann, Richard H.;
    • Brinkman, Ryan R.
    Publication type:
    Product Review
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    Muscle Research and Gene Ontology: New standards for improved data integration.

    Published in:
    BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-6
    By:
    • Feltrin, Erika;
    • Campanaro, Stefano;
    • Diehl, Alexander D.;
    • Ehler, Elisabeth;
    • Faulkner, Georgine;
    • Fordham, Jennifer;
    • Gardin, Chiara;
    • Harris, Midori;
    • Hill, David;
    • Knoell, Ralph;
    • Laveder, Paolo;
    • Mittempergher, Lorenza;
    • Nori, Alessandra;
    • Reggiani, Carlo;
    • Sorrentino, Vincenzo;
    • Volpe, Pompeo;
    • Zara, Ivano;
    • Valle, Giorgio;
    • Clark, Jennifer Deegan née
    Publication type:
    Article
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    A Unified Anatomy Ontology of the Vertebrate Skeletal System.

    Published in:
    PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
    By:
    • Dahdul, Wasila M.;
    • Balhoff, James P.;
    • Blackburn, David C.;
    • Diehl, Alexander D.;
    • Haendel, Melissa A.;
    • Hall, Brian K.;
    • Lapp, Hilmar;
    • Lundberg, John G.;
    • Mungall, Christopher J.;
    • Ringwald, Martin;
    • Segerdell, Erik;
    • Van Slyke, Ceri E.;
    • Vickaryous, Matthew K.;
    • Westerfield, Monte;
    • Mabee, Paula M.
    Publication type:
    Article
    12

    A Trend Towards Causal Therapy.

    Published in:
    2020
    By:
    • Hummel, Jana;
    • Bierhals, Bernadette;
    • Breivogel, Boris;
    • Diehl, Alexander
    Publication type:
    Letter to the Editor
    13

    Access to immunology through the Gene Ontology.

    Published in:
    Immunology, 2008, v. 125, n. 2, p. 154, doi. 10.1111/j.1365-2567.2008.02940.x
    By:
    • Lovering, Ruth C.;
    • Camon, Evelyn B.;
    • Blake, Judith A.;
    • Diehl, Alexander D.
    Publication type:
    Article
    14
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    The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

    Published in:
    Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
    By:
    • Diehl, Alexander D.;
    • Meehan, Terrence F.;
    • Bradford, Yvonne M.;
    • Brush, Matthew H.;
    • Dahdul, Wasila M.;
    • Dougall, David S.;
    • Yongqun He;
    • Osumi-Sutherland, David;
    • Ruttenberg, Alan;
    • Sarntivijai, Sirarat;
    • Van Slyke, Ceri E.;
    • Vasilevsky, Nicole A.;
    • Haendel, Melissa A.;
    • Blake, Judith A.;
    • Mungall, Christopher J.
    Publication type:
    Article
    16

    Representing vision and blindness.

    Published in:
    Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0058-0
    By:
    • Ray, Patrick L.;
    • Cox, Alexander P.;
    • Jensen, Mark;
    • Allen, Travis;
    • Duncan, William;
    • Diehl, Alexander D.
    Publication type:
    Article
    17

    The neurological disease ontology.

    Published in:
    Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-42
    By:
    • Jensen, Mark;
    • Cox, Alexander P.;
    • Chaudhry, Naveed;
    • Ng, Marcus;
    • Sule, Donat;
    • Duncan, William;
    • Weinstock-Guttman, Bianca;
    • Smith, Barry;
    • Ruttenberg, Alan;
    • Szigeti, Kinga;
    • Diehl, Alexander D.;
    • Ray, Patrick
    Publication type:
    Article
    18
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    Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO<sub>2</sub> Fixation and 16S Tags of the Transcriptome in Incubation Experiments

    Published in:
    Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02296
    By:
    • Böhnke, Stefanie;
    • Sass, Katharina;
    • Gonnella, Giorgio;
    • Diehl, Alexander;
    • Kleint, Charlotte;
    • Bach, Wolfgang;
    • Zitoun, Rebecca;
    • Koschinsky, Andrea;
    • Indenbirken, Daniela;
    • Sander, Sylvia G.;
    • Kurtz, Stefan;
    • Perner, Mirjam
    Publication type:
    Article
    20

    Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

    Published in:
    Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00320-3
    By:
    • Toro, Sabrina;
    • Anagnostopoulos, Anna V.;
    • Bello, Susan M.;
    • Blumberg, Kai;
    • Cameron, Rhiannon;
    • Carmody, Leigh;
    • Diehl, Alexander D.;
    • Dooley, Damion M.;
    • Duncan, William D.;
    • Fey, Petra;
    • Gaudet, Pascale;
    • Harris, Nomi L.;
    • Joachimiak, Marcin P.;
    • Kiani, Leila;
    • Lubiana, Tiago;
    • Munoz-Torres, Monica C.;
    • O'Neil, Shawn;
    • Osumi-Sutherland, David;
    • Puig-Barbe, Aleix;
    • Reese, Justin T.
    Publication type:
    Article
    21

    Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.

    Published in:
    Human Molecular Genetics, 2010, v. 19, n. 4, p. 707, doi. 10.1093/hmg/ddp521
    By:
    • Karp, David R.;
    • Marthandan, Nishanth;
    • Marsh, Steven G.E.;
    • Ahn, Chul;
    • Arnett, Frank C.;
    • DeLuca, David S.;
    • Diehl, Alexander D.;
    • Dunivin, Raymond;
    • Eilbeck, Karen;
    • Feolo, Michael;
    • Guidry, Paula A.;
    • Helmberg, Wolfgang;
    • Lewis, Suzanna;
    • Mayes, Maureen D.;
    • Mungall, Chris;
    • Natale, Darren A.;
    • Peters, Bjoern;
    • Petersdorf, Effie;
    • Reveille, John D.;
    • Smith, Barry
    Publication type:
    Article
    22

    OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
    By:
    • Jackson, Rebecca;
    • Matentzoglu, Nicolas;
    • Overton, James A;
    • Vita, Randi;
    • Balhoff, James P;
    • Buttigieg, Pier Luigi;
    • Carbon, Seth;
    • Courtot, Melanie;
    • Diehl, Alexander D;
    • Dooley, Damion M;
    • Duncan, William D;
    • Harris, Nomi L;
    • Haendel, Melissa A;
    • Lewis, Suzanna E;
    • Natale, Darren A;
    • Osumi-Sutherland, David;
    • Ruttenberg, Alan;
    • Schriml, Lynn M;
    • Smith, Barry;
    • Stoeckert Jr., Christian J
    Publication type:
    Article
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    The identification of a common pathogen-specific HLA class I A*0201-restricted cytotoxic T cell epitope encoded within the heat shock protein 65.

    Published in:
    European Journal of Immunology, 2001, v. 31, n. 12, p. 3602, doi. 10.1002/1521-4141(200112)31:12&lt;3602::AID-IMMU3602&gt;3.0.CO;2-L
    By:
    • Charo, Jehad;
    • Geluk, Annemieke;
    • Sundbäck, Maria;
    • Mirzai, Babak;
    • Diehl, Alexander D.;
    • Malmberg, Karl-Johan;
    • Achour, Adnane;
    • Huriguchi, Shigetoshi;
    • Meijgaarden, Krista E. van;
    • Drijfhout, Jan-Wouter;
    • Beekman, Nico;
    • Veelen, Peter van;
    • Ossendorp, Ferry;
    • Ottenhoff, Tom H.M.;
    • Kiessling, Rolf
    Publication type:
    Article
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    Gateways to the FANTOM5 promoter level mammalian expression atlas.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0560-6
    By:
    • Lizio, Marina;
    • Harshbarger, Jayson;
    • Hisashi Shimoji;
    • Severin, Jessica;
    • Takeya Kasukawa;
    • Sahin, Serkan;
    • Abugessaisa, Imad;
    • Shiro Fukuda;
    • Fumi Hori;
    • Sachi Ishikawa-Kato;
    • Mungall, Christopher J.;
    • Arner, Erik;
    • Baillie, J. Kenneth;
    • Bertin, Nicolas;
    • Hidemasa Bono;
    • de Hoon, Michiel;
    • Diehl, Alexander D.;
    • Dimont, Emmanuel;
    • Freeman, Tom C.;
    • Kaori Fujieda
    Publication type:
    Article
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    Logical Development of the Cell Ontology.

    Published in:
    BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6
    By:
    • Meehan, Terrence F.;
    • Masci, Anna Maria;
    • Abdulla, Amina;
    • Cowell, Lindsay G.;
    • Blake, Judith A.;
    • Mungall, Christopher J.;
    • Diehl, Alexander D.
    Publication type:
    Article
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    Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075
    By:
    • Natale, Darren A.;
    • Arighi, Cecilia N.;
    • Blake, Judith A.;
    • Bona, Jonathan;
    • Chuming Chen;
    • Sheng-Chih Chen;
    • Christie, Karen R.;
    • Cowart, Julie;
    • D’Eustachio, Peter;
    • Diehl, Alexander D.;
    • Drabkin, Harold J.;
    • Duncan, William D.;
    • Huang, Hongzhan;
    • Ren, Jia;
    • Ross, Karen;
    • Ruttenberg, Alan;
    • Shamovsky, Veronica;
    • Smith, Barry;
    • Qinghua Wang;
    • Jian Zhang
    Publication type:
    Article
    42

    Protein Ontology: a controlled structured network of protein entities.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173
    By:
    • Natale, Darren A.;
    • Arighi, Cecilia N.;
    • Blake, Judith A.;
    • Bult, Carol J.;
    • Christie, Karen R.;
    • Cowart, Julie;
    • D’Eustachio, Peter;
    • Diehl, Alexander D.;
    • Drabkin, Harold J.;
    • Helfer, Olivia;
    • Huang, Hongzhan;
    • Masci, Anna Maria;
    • Ren, Jia;
    • Roberts, Natalia V.;
    • Ross, Karen;
    • Ruttenberg, Alan;
    • Shamovsky, Veronica;
    • Smith, Barry;
    • Yerramalla, Meher Shruti;
    • Zhang, Jian
    Publication type:
    Article
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    The German ROP Registry: data from 90 infants treated for retinopathy of prematurity.

    Published in:
    Acta Ophthalmologica (1755375X), 2016, v. 94, n. 8, p. e744, doi. 10.1111/aos.13069
    By:
    • Walz, Johanna M.;
    • Bemme, Sebastian;
    • Pielen, Amelie;
    • Aisenbrey, Sabine;
    • Breuß, Helge;
    • Alex, Anne F.;
    • Wagenfeld, Lars;
    • Schiedel, Susanne;
    • Krohne, Tim U.;
    • Stahl, Andreas;
    • Akman, Stella H.;
    • Bajor, Anna;
    • Biermann, Julia;
    • Bohnhorst, Bettina;
    • Brockmann, Dorothee;
    • Diehl, Thilo Alexander;
    • Eter, Nicole;
    • Feltgen, Nicolas;
    • Framme, Carsten;
    • Gesser, Caroline
    Publication type:
    Article