Works by Aghaeepour, Nima

Results: 72
    1
    2

    Mediterranean vs. Western diet effects on the primate cerebral cortical pre‐synaptic proteome: Relationships with the transcriptome and multi‐system phenotypes.

    Published in:
    Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2025, v. 21, n. 3, p. 1, doi. 10.1002/alz.70041
    By:
    • Berson, Eloise;
    • Frye, Brett M.;
    • Gajera, Chandresh R.;
    • Saarunya, Geetha;
    • Perna, Amalia;
    • Phongpreecha, Thanaphong;
    • Shome, Sayane;
    • Negrey, Jacob D.;
    • Aghaeepour, Nima;
    • Montine, Thomas J.;
    • Craft, Suzanne;
    • Register, Thomas C.;
    • Shively, Carol A.
    Publication type:
    Article
    3
    4
    5
    6
    7
    8
    9
    10
    11

    Landscape of coordinated immune responses to H1N1 challenge in humans.

    Published in:
    2020
    By:
    • Rahil, Zainab;
    • Leylek, Rebecca;
    • Schürch, Christian M.;
    • Han Chen;
    • Bjornson-Hooper, Zach;
    • Christensen, Shannon R.;
    • Gherardini, Pier Federico;
    • Bhate, Salil S.;
    • Spitzer, Matthew H.;
    • Fragiadakis, Gabriela K.;
    • Mukherjee, Nilanjan;
    • Kim, Nelson;
    • Sizun Jiang;
    • Yo, Jennifer;
    • Gaudilliere, Brice;
    • Affrime, Melton;
    • Bock, Bonnie;
    • Hensley, Scott E.;
    • Idoyaga, Juliana;
    • Aghaeepour, Nima
    Publication type:
    journal article
    12
    13

    Multivariate prediction of dementia in Parkinson's disease.

    Published in:
    NPJ Parkinson's Disease, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41531-020-00121-2
    By:
    • Phongpreecha, Thanaphong;
    • Cholerton, Brenna;
    • Mata, Ignacio F.;
    • Zabetian, Cyrus P.;
    • Poston, Kathleen L.;
    • Aghaeepour, Nima;
    • Tian, Lu;
    • Quinn, Joseph F.;
    • Chung, Kathryn A.;
    • Hiller, Amie L.;
    • Hu, Shu-Ching;
    • Edwards, Karen L.;
    • Montine, Thomas J.
    Publication type:
    Article
    14

    Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

    Published in:
    European Journal of Immunology, 2019, v. 49, n. 10, p. 1457, doi. 10.1002/eji.201970107
    By:
    • Cossarizza, Andrea;
    • Chang, Hyun‐Dong;
    • Radbruch, Andreas;
    • Acs, Andreas;
    • Adam, Dieter;
    • Adam‐Klages, Sabine;
    • Agace, William W.;
    • Aghaeepour, Nima;
    • Akdis, Mübeccel;
    • Allez, Matthieu;
    • Almeida, Larissa Nogueira;
    • Alvisi, Giorgia;
    • Anderson, Graham;
    • Andrä, Immanuel;
    • Annunziato, Francesco;
    • Anselmo, Achille;
    • Bacher, Petra;
    • Baldari, Cosima T.;
    • Bari, Sudipto;
    • Barnaba, Vincenzo
    Publication type:
    Article
    15

    Proteins in Scalp Hair of Preschool Children.

    Published in:
    Psych, 2024, v. 6, n. 1, p. 143, doi. 10.3390/psych6010009
    By:
    • Rovnaghi, Cynthia R.;
    • Singhal, Kratika;
    • Leib, Ryan D.;
    • Xenochristou, Maria;
    • Aghaeepour, Nima;
    • Chien, Allis S.;
    • Dinakarpandian, Deendayal;
    • Anand, Kanwaljeet J. S.
    Publication type:
    Article
    16

    Generating pregnant patient biological profiles by deconvoluting clinical records with electronic health record foundation models.

    Published in:
    Briefings in Bioinformatics, 2024, v. 25, n. 6, p. 1, doi. 10.1093/bib/bbae574
    By:
    • Seong, David;
    • Mataraso, Samson;
    • Espinosa, Camilo;
    • Berson, Eloise;
    • Reincke, S Momsen;
    • Xue, Lei;
    • Kashiwagi, Chloe;
    • Kim, Yeasul;
    • Shu, Chi-Hung;
    • Chung, Philip;
    • Ghanem, Marc;
    • Xie, Feng;
    • Wong, Ronald J;
    • Angst, Martin S;
    • Gaudilliere, Brice;
    • Shaw, Gary M;
    • Stevenson, David K;
    • Aghaeepour, Nima
    Publication type:
    Article
    17

    Early response evaluation by single cell signaling profiling in acute myeloid leukemia.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35624-4
    By:
    • Tislevoll, Benedicte Sjo;
    • Hellesøy, Monica;
    • Fagerholt, Oda Helen Eck;
    • Gullaksen, Stein-Erik;
    • Srivastava, Aashish;
    • Birkeland, Even;
    • Kleftogiannis, Dimitrios;
    • Ayuda-Durán, Pilar;
    • Piechaczyk, Laure;
    • Tadele, Dagim Shiferaw;
    • Skavland, Jørn;
    • Panagiotis, Baliakas;
    • Hovland, Randi;
    • Andresen, Vibeke;
    • Seternes, Ole Morten;
    • Tvedt, Tor Henrik Anderson;
    • Aghaeepour, Nima;
    • Gavasso, Sonia;
    • Porkka, Kimmo;
    • Jonassen, Inge
    Publication type:
    Article
    18

    Quantitative estimate of cognitive resilience and its medical and genetic associations.

    Published in:
    Alzheimer's Research & Therapy, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13195-023-01329-z
    By:
    • Phongpreecha, Thanaphong;
    • Godrich, Dana;
    • Berson, Eloise;
    • Espinosa, Camilo;
    • Kim, Yeasul;
    • Cholerton, Brenna;
    • Chang, Alan L.;
    • Mataraso, Samson;
    • Bukhari, Syed A.;
    • Perna, Amalia;
    • Yakabi, Koya;
    • Montine, Kathleen S.;
    • Poston, Kathleen L.;
    • Mormino, Elizabeth;
    • White, Lon;
    • Beecham, Gary;
    • Aghaeepour, Nima;
    • Montine, Thomas J.
    Publication type:
    Article
    19
    20
    21
    22
    23

    Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops.

    Published in:
    Cytometry. Part A, 2019, v. 95, n. 12, p. 1236, doi. 10.1002/cyto.a.23941
    By:
    • Czechowska, Kamila;
    • Lannigan, Joanne;
    • Aghaeepour, Nima;
    • Back, Jessica B.;
    • Begum, Julfa;
    • Behbehani, Greg;
    • Bispo, Cláudia;
    • Bitoun, Daniel;
    • Fernández, Alfonso Blanco;
    • Boova, Samuel Tony;
    • Brinkman, Ryan Remy;
    • Ciccolella, Christopher O.;
    • Cotleur, Bunny;
    • Davies, Derek;
    • Dela Cruz, Gelo Victoriano;
    • Del Rio‐Guerra, Roxana;
    • Des Lauriers‐Cox, Ann Marie;
    • Douagi, Iyadh;
    • Dumrese, Claudia;
    • Bonilla Escobar, Diana L.
    Publication type:
    Article
    24
    25

    A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes.

    Published in:
    Cytometry. Part A, 2016, v. 89, n. 1, p. 16, doi. 10.1002/cyto.a.22732
    By:
    • Aghaeepour, Nima;
    • Chattopadhyay, Pratip;
    • Chikina, Maria;
    • Dhaene, Tom;
    • Van Gassen, Sofie;
    • Kursa, Miron;
    • Lambrecht, Bart N.;
    • Malek, Mehrnoush;
    • McLachlan, G. J.;
    • Qian, Yu;
    • Qiu, Peng;
    • Saeys, Yvan;
    • Stanton, Rick;
    • Tong, Dong;
    • Vens, Celine;
    • Walkowiak, Sławomir;
    • Wang, Kui;
    • Finak, Greg;
    • Gottardo, Raphael;
    • Mosmann, Tim
    Publication type:
    Article
    26
    27

    Implementing Mass Cytometry at the Bedside to Study the Immunological Basis of Human Diseases: Distinctive Immune Features in Patients with a History of Term or Preterm Birth.

    Published in:
    Cytometry. Part A, 2015, v. 87, n. 9, p. 817, doi. 10.1002/cyto.a.22720
    By:
    • Gaudillière, Brice;
    • Ganio, Edward A.;
    • Tingle, Martha;
    • Lancero, Hope L.;
    • Fragiadakis, Gabriela K.;
    • Baca, Quentin J.;
    • Aghaeepour, Nima;
    • Wong, Ronald J.;
    • Quaintance, Cele;
    • El‐Sayed, Yasser Y.;
    • Shaw, Gary M.;
    • Lewis, David B.;
    • Stevenson, David K.;
    • Nolan, Garry P.;
    • Angst, Martin S.
    Publication type:
    Article
    28
    29
    30
    31
    32

    Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

    Published in:
    Bioinformatics, 2019, v. 35, n. 1, p. 95, doi. 10.1093/bioinformatics/bty537
    By:
    • Ghaemi, Mohammad Sajjad;
    • Culos, Anthony;
    • Stanley, Natalie;
    • Tanada, Athena;
    • Tsai, Amy;
    • Gaudilliere, Dyani;
    • Ganio, Edward;
    • Han, Xiaoyuan;
    • Ando, Kazuo;
    • McNeil, Leslie;
    • Tingle, Martha;
    • Angst, Martin S;
    • Gaudilliere, Brice;
    • Aghaeepour, Nima;
    • Sirota, Marina;
    • Winn, Virginia D;
    • Druzin, Maurice L;
    • Gibbs, Ronald;
    • Nia, Vahid Partovi;
    • Agard, Bruno
    Publication type:
    Article
    33
    34

    Deep profiling of multitube flow cytometry data.

    Published in:
    Bioinformatics, 2015, v. 31, n. 10, p. 1623, doi. 10.1093/bioinformatics/btv008
    By:
    • O'Neill, Kieran;
    • Aghaeepour, Nima;
    • Parker, Jeremy;
    • Hogge, Donna;
    • Karsan, Aly;
    • Dalal, Bakul;
    • Brinkman, Ryan R.
    Publication type:
    Article
    35
    36
    37

    Harnessing the Potential of Multiomics Studies for Precision Medicine in Infectious Disease.

    Published in:
    Open Forum Infectious Diseases, 2021, v. 8, n. 11, p. 1, doi. 10.1093/ofid/ofab483
    By:
    • Ward, Rebecca A;
    • Aghaeepour, Nima;
    • Bhattacharyya, Roby P;
    • Clish, Clary B;
    • Gaudillière, Brice;
    • Hacohen, Nir;
    • Mansour, Michael K;
    • Mudd, Philip A;
    • Pasupneti, Shravani;
    • Presti, Rachel M;
    • Rhee, Eugene P;
    • Sen, Pritha;
    • Spec, Andrej;
    • Tam, Jenny M;
    • Villani, Alexandra-Chloé;
    • Woolley, Ann E;
    • Hsu, Joe L;
    • Vyas, Jatin M
    Publication type:
    Article
    38
    39

    Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40611-4
    By:
    • Berson, Eloise;
    • Sreenivas, Anjali;
    • Phongpreecha, Thanaphong;
    • Perna, Amalia;
    • Grandi, Fiorella C.;
    • Xue, Lei;
    • Ravindra, Neal G.;
    • Payrovnaziri, Neelufar;
    • Mataraso, Samson;
    • Kim, Yeasul;
    • Espinosa, Camilo;
    • Chang, Alan L.;
    • Becker, Martin;
    • Montine, Kathleen S.;
    • Fox, Edward J.;
    • Chang, Howard Y.;
    • Corces, M. Ryan;
    • Aghaeepour, Nima;
    • Montine, Thomas J.
    Publication type:
    Article
    40
    41
    42
    43
    44
    45

    Flow Cytometry Bioinformatics.

    Published in:
    PLoS Computational Biology, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003365
    By:
    • O'Neill, Kieran;
    • Aghaeepour, Nima;
    • Špidlen, Josef;
    • Brinkman, Ryan
    Publication type:
    Article
    46

    Cross-species comparative analysis of single presynapses.

    Published in:
    Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-40683-8
    By:
    • Berson, Eloïse;
    • Gajera, Chandresh R.;
    • Phongpreecha, Thanaphong;
    • Perna, Amalia;
    • Bukhari, Syed A.;
    • Becker, Martin;
    • Chang, Alan L.;
    • De Francesco, Davide;
    • Espinosa, Camilo;
    • Ravindra, Neal G.;
    • Postupna, Nadia;
    • Latimer, Caitlin S.;
    • Shively, Carol A.;
    • Register, Thomas C.;
    • Craft, Suzanne;
    • Montine, Kathleen S.;
    • Fox, Edward J.;
    • Keene, C. Dirk;
    • Bendall, Sean C.;
    • Aghaeepour, Nima
    Publication type:
    Article
    47

    A Peripheral Immune Signature of Labor Induction.

    Published in:
    Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.725989
    By:
    • Ando, Kazuo;
    • Hédou, Julien J.;
    • Feyaerts, Dorien;
    • Han, Xiaoyuan;
    • Ganio, Edward A.;
    • Tsai, Eileen S.;
    • Peterson, Laura S.;
    • Verdonk, Franck;
    • Tsai, Amy S.;
    • Marić, Ivana;
    • Wong, Ronald J.;
    • Angst, Martin S.;
    • Aghaeepour, Nima;
    • Stevenson, David K.;
    • Blumenfeld, Yair J.;
    • Sultan, Pervez;
    • Carvalho, Brendan;
    • Stelzer, Ina A.;
    • Gaudillière, Brice
    Publication type:
    Article
    48

    Single-Cell Analysis of the Neonatal Immune System Across the Gestational Age Continuum.

    Published in:
    Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.714090
    By:
    • Peterson, Laura S.;
    • Hedou, Julien;
    • Ganio, Edward A.;
    • Stelzer, Ina A.;
    • Feyaerts, Dorien;
    • Harbert, Eliza;
    • Adusumelli, Yamini;
    • Ando, Kazuo;
    • Tsai, Eileen S.;
    • Tsai, Amy S.;
    • Han, Xiaoyuan;
    • Ringle, Megan;
    • Houghteling, Pearl;
    • Reiss, Jonathan D.;
    • Lewis, David B.;
    • Winn, Virginia D.;
    • Angst, Martin S.;
    • Aghaeepour, Nima;
    • Stevenson, David K.;
    • Gaudilliere, Brice
    Publication type:
    Article
    49
    50