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A Trend Towards Causal Therapy.
Published in:
2020
By:
- Hummel, Jana;
- Bierhals, Bernadette;
- Breivogel, Boris;
- Diehl, Alexander
Publication type:
Letter to the Editor
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Blake, Judith A.;
- Bona, Jonathan;
- Chuming Chen;
- Sheng-Chih Chen;
- Christie, Karen R.;
- Cowart, Julie;
- D’Eustachio, Peter;
- Diehl, Alexander D.;
- Drabkin, Harold J.;
- Duncan, William D.;
- Huang, Hongzhan;
- Ren, Jia;
- Ross, Karen;
- Ruttenberg, Alan;
- Shamovsky, Veronica;
- Smith, Barry;
- Qinghua Wang;
- Jian Zhang
Publication type:
Article
Protein Ontology: a controlled structured network of protein entities.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173
By:
- Natale, Darren A.;
- Arighi, Cecilia N.;
- Blake, Judith A.;
- Bult, Carol J.;
- Christie, Karen R.;
- Cowart, Julie;
- D’Eustachio, Peter;
- Diehl, Alexander D.;
- Drabkin, Harold J.;
- Helfer, Olivia;
- Huang, Hongzhan;
- Masci, Anna Maria;
- Ren, Jia;
- Roberts, Natalia V.;
- Ross, Karen;
- Ruttenberg, Alan;
- Shamovsky, Veronica;
- Smith, Barry;
- Yerramalla, Meher Shruti;
- Zhang, Jian
Publication type:
Article
MARHYS (MARine HYdrothermal Solutions) Database: A Global Compilation of Marine Hydrothermal Vent Fluid, End Member, and Seawater Compositions.
Published in:
Geochemistry, Geophysics, Geosystems: G3, 2020, v. 21, n. 12, p. 1, doi. 10.1029/2020GC009385
By:
- Diehl, Alexander;
- Bach, Wolfgang
Publication type:
Article
The identification of a common pathogen-specific HLA class I A*0201-restricted cytotoxic T cell epitope encoded within the heat shock protein 65.
Published in:
European Journal of Immunology, 2001, v. 31, n. 12, p. 3602, doi. 10.1002/1521-4141(200112)31:12<3602::AID-IMMU3602>3.0.CO;2-L
By:
- Charo, Jehad;
- Geluk, Annemieke;
- Sundbäck, Maria;
- Mirzai, Babak;
- Diehl, Alexander D.;
- Malmberg, Karl-Johan;
- Achour, Adnane;
- Huriguchi, Shigetoshi;
- Meijgaarden, Krista E. van;
- Drijfhout, Jan-Wouter;
- Beekman, Nico;
- Veelen, Peter van;
- Ossendorp, Ferry;
- Ottenhoff, Tom H.M.;
- Kiessling, Rolf
Publication type:
Article
Volcanically hosted venting with indications of ultramafic influence at Aurora hydrothermal field on Gakkel Ridge.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34014-0
By:
- German, Christopher R.;
- Reeves, Eoghan P.;
- Türke, Andreas;
- Diehl, Alexander;
- Albers, Elmar;
- Bach, Wolfgang;
- Purser, Autun;
- Ramalho, Sofia P.;
- Suman, Stefano;
- Mertens, Christian;
- Walter, Maren;
- Ramirez-Llodra, Eva;
- Schlindwein, Vera;
- Bünz, Stefan;
- Boetius, Antje
Publication type:
Article
Gateways to the FANTOM5 promoter level mammalian expression atlas.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0560-6
By:
- Lizio, Marina;
- Harshbarger, Jayson;
- Hisashi Shimoji;
- Severin, Jessica;
- Takeya Kasukawa;
- Sahin, Serkan;
- Abugessaisa, Imad;
- Shiro Fukuda;
- Fumi Hori;
- Sachi Ishikawa-Kato;
- Mungall, Christopher J.;
- Arner, Erik;
- Baillie, J. Kenneth;
- Bertin, Nicolas;
- Hidemasa Bono;
- de Hoon, Michiel;
- Diehl, Alexander D.;
- Dimont, Emmanuel;
- Freeman, Tom C.;
- Kaori Fujieda
Publication type:
Article
GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.
Published in:
Bioinformatics, 2022, v. 38, n. 24, p. 5413, doi. 10.1093/bioinformatics/btac704
By:
- Groth, Theodore;
- Diehl, Alexander D;
- Gunawan, Rudiyanto;
- Neelamegham, Sriram
Publication type:
Article
flowCL: ontology-based cell population labelling in flow cytometry.
Published in:
Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807
By:
- Courtot, Mélanie;
- Meskas, Justin;
- Diehl, Alexander D.;
- Droumeva, Radina;
- Gottardo, Raphael;
- Jalali, Adrin;
- Taghiyar, Mohammad Jafar;
- Maecker, Holden T.;
- McCoy, J. Philip;
- Ruttenberg, Alan;
- Scheuermann, Richard H.;
- Brinkman, Ryan R.
Publication type:
Article
flowCL: ontology-based cell population labelling in flow cytometry.
Published in:
2015
By:
- Courtot, Mélanie;
- Meskas, Justin;
- Diehl, Alexander D.;
- Droumeva, Radina;
- Gottardo, Raphael;
- Jalali, Adrin;
- Taghiyar, Mohammad Jafar;
- Maecker, Holden T.;
- McCoy, J. Philip;
- Ruttenberg, Alan;
- Scheuermann, Richard H.;
- Brinkman, Ryan R.
Publication type:
Product Review
Impaired immune responses and altered peptide repertoire in tapasin-deficient mice.
Published in:
Nature Immunology, 2000, v. 1, n. 3, p. 234, doi. 10.1038/79775
By:
- Garbi, Natalio;
- Tan, Pamela;
- Diehl, Alexander D.;
- Chambers, Benedict J.;
- Ljunggren, Hans-Gustaf;
- Momburg, Frank;
- Hämmerling, Günter J.
Publication type:
Article
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
By:
- Jackson, Rebecca;
- Matentzoglu, Nicolas;
- Overton, James A;
- Vita, Randi;
- Balhoff, James P;
- Buttigieg, Pier Luigi;
- Carbon, Seth;
- Courtot, Melanie;
- Diehl, Alexander D;
- Dooley, Damion M;
- Duncan, William D;
- Harris, Nomi L;
- Haendel, Melissa A;
- Lewis, Suzanna E;
- Natale, Darren A;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Schriml, Lynn M;
- Smith, Barry;
- Stoeckert Jr., Christian J
Publication type:
Article
Ontology development for biological systems: immunology.
Published in:
Bioinformatics, 2007, v. 23, n. 7, p. 913, doi. 10.1093/bioinformatics/btm029
By:
- Alexander D. Diehl;
- Jamie A. Lee;
- Richard H. Scheuermann;
- Judith A. Blake
Publication type:
Article
Alcoholism in women: is it different in onset and outcome compared to men?
Published in:
European Archives of Psychiatry & Clinical Neuroscience, 2007, v. 257, n. 6, p. 344, doi. 10.1007/s00406-007-0737-z
By:
- Diehl, Alexander;
- Croissant, Bernhard;
- Batra, Anil;
- Mundle, Götz;
- Nakovics, Helmut;
- Mann, Karl
Publication type:
Article
Reduced affective symptoms during tobacco dependence treatment with varenicline.
Published in:
Addiction, 2009, v. 104, n. 5, p. 859, doi. 10.1111/j.1360-0443.2009.02537.x
By:
- Grosshans, Martin;
- Mutschler, Jochen;
- Hermann, Derik;
- Mann, Karl;
- Diehl, Alexander
Publication type:
Article
The German ROP Registry: data from 90 infants treated for retinopathy of prematurity.
Published in:
Acta Ophthalmologica (1755375X), 2016, v. 94, n. 8, p. e744, doi. 10.1111/aos.13069
By:
- Walz, Johanna M.;
- Bemme, Sebastian;
- Pielen, Amelie;
- Aisenbrey, Sabine;
- Breuß, Helge;
- Alex, Anne F.;
- Wagenfeld, Lars;
- Schiedel, Susanne;
- Krohne, Tim U.;
- Stahl, Andreas;
- Akman, Stella H.;
- Bajor, Anna;
- Biermann, Julia;
- Bohnhorst, Bettina;
- Brockmann, Dorothee;
- Diehl, Thilo Alexander;
- Eter, Nicole;
- Feltgen, Nicolas;
- Framme, Carsten;
- Gesser, Caroline
Publication type:
Article
Ontology based molecular signatures for immune cell types via gene expression analysis.
Published in:
BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-263
By:
- Meehan, Terrence F.;
- Vasilevsky, Nicole A.;
- Mungall, Christopher J.;
- Dougall, David S.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Diehl, Alexander D.
Publication type:
Article
Logical Development of the Cell Ontology.
Published in:
BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6
By:
- Meehan, Terrence F.;
- Masci, Anna Maria;
- Abdulla, Amina;
- Cowell, Lindsay G.;
- Blake, Judith A.;
- Mungall, Christopher J.;
- Diehl, Alexander D.
Publication type:
Article
An improved ontological representation of dendritic cells as a paradigm for all cell types.
Published in:
BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-70
By:
- Masci, Anna Maria;
- Arighi, Cecilia N.;
- Diehl, Alexander D.;
- Lieberman, Anne E.;
- Mungall, Chris;
- Scheuermann, Richard H.;
- Smith, Barry;
- Cowell, Lindsay G.
Publication type:
Article
Novel sequence feature variant type analysis of the HLA genetic association in systemic sclerosis.
Published in:
Human Molecular Genetics, 2010, v. 19, n. 4, p. 707, doi. 10.1093/hmg/ddp521
By:
- Karp, David R.;
- Marthandan, Nishanth;
- Marsh, Steven G.E.;
- Ahn, Chul;
- Arnett, Frank C.;
- DeLuca, David S.;
- Diehl, Alexander D.;
- Dunivin, Raymond;
- Eilbeck, Karen;
- Feolo, Michael;
- Guidry, Paula A.;
- Helmberg, Wolfgang;
- Lewis, Suzanna;
- Mayes, Maureen D.;
- Mungall, Chris;
- Natale, Darren A.;
- Peters, Bjoern;
- Petersdorf, Effie;
- Reveille, John D.;
- Smith, Barry
Publication type:
Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
By:
- Dahdul, Wasila M.;
- Balhoff, James P.;
- Blackburn, David C.;
- Diehl, Alexander D.;
- Haendel, Melissa A.;
- Hall, Brian K.;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mungall, Christopher J.;
- Ringwald, Martin;
- Segerdell, Erik;
- Van Slyke, Ceri E.;
- Vickaryous, Matthew K.;
- Westerfield, Monte;
- Mabee, Paula M.
Publication type:
Article
Subcritical Phase Separation and Occurrence of Deep-Seated Brines at the NW Caldera Vent Field, Brothers Volcano: Evidence from Fluid Inclusions in Hydrothermal Precipitates.
Published in:
Geofluids, 2020, p. 1, doi. 10.1155/2020/8868259
By:
- Diehl, Alexander;
- de Ronde, Cornel E. J.;
- Bach, Wolfgang
Publication type:
Article
Access to immunology through the Gene Ontology.
Published in:
Immunology, 2008, v. 125, n. 2, p. 154, doi. 10.1111/j.1365-2567.2008.02940.x
By:
- Lovering, Ruth C.;
- Camon, Evelyn B.;
- Blake, Judith A.;
- Diehl, Alexander D.
Publication type:
Article
Why is Disulfiram Superior to Acamprosate in the Routine Clinical Setting? A Retrospective Long-Term Study in 353 Alcohol-Dependent Patients.
Published in:
Alcohol & Alcoholism, 2010, v. 45, n. 3, p. 271, doi. 10.1093/alcalc/agq017
By:
- Diehl, Alexander;
- Ulmer, Lisa;
- Mutschler, Jochen;
- Herre, Hans;
- Krumm, Bertram;
- Croissant, Bernhard;
- Mann, Karl;
- Kiefer, Falk
Publication type:
Article
Disulfiram, an Option for the Treatment of Pathological Gambling?
Published in:
Alcohol & Alcoholism, 2010, v. 45, n. 2, p. 214, doi. 10.1093/alcalc/agp093
By:
- Mutschler, Jochen;
- Bühler, Mira;
- Grosshans, Martin;
- Diehl, Alexander;
- Mann, Karl;
- Kiefer, Falk
Publication type:
Article
Supervised Disulfiram in Relapse Prevention in Alcohol-Dependent Patients Suffering From Comorbid Borderline Personality Disorder—A Case Series.
Published in:
Alcohol & Alcoholism, 2010, v. 45, n. 2, p. 146, doi. 10.1093/alcalc/agq001
By:
- Mutschler, Jochen;
- Grosshans, Martin;
- Koopmann, Anne;
- Hermann, Derik;
- Diehl, Alexander;
- Mann, Karl;
- Kiefer, Falk
Publication type:
Article
Sources of Mg Enrichments in Vent Fluids From the Kermadec Arc Recorded by Li, B, and Mg Isotopes.
Published in:
Geochemistry, Geophysics, Geosystems: G3, 2022, v. 23, n. 11, p. 1, doi. 10.1029/2022GC010471
By:
- Wilckens, Frederike K.;
- Hansen, Christian T.;
- Diehl, Alexander;
- Bach, Wolfgang;
- Kasemann, Simone A.
Publication type:
Article
Parameters Governing the Community Structure and Element Turnover in Kermadec Volcanic Ash and Hydrothermal Fluids as Monitored by Inorganic Electron Donor Consumption, Autotrophic CO<sub>2</sub> Fixation and 16S Tags of the Transcriptome in Incubation Experiments
Published in:
Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02296
By:
- Böhnke, Stefanie;
- Sass, Katharina;
- Gonnella, Giorgio;
- Diehl, Alexander;
- Kleint, Charlotte;
- Bach, Wolfgang;
- Zitoun, Rebecca;
- Koschinsky, Andrea;
- Indenbirken, Daniela;
- Sander, Sylvia G.;
- Kurtz, Stefan;
- Perner, Mirjam
Publication type:
Article
Muscle Research and Gene Ontology: New standards for improved data integration.
Published in:
BMC Medical Genomics, 2009, v. 2, p. 1, doi. 10.1186/1755-8794-2-6
By:
- Feltrin, Erika;
- Campanaro, Stefano;
- Diehl, Alexander D.;
- Ehler, Elisabeth;
- Faulkner, Georgine;
- Fordham, Jennifer;
- Gardin, Chiara;
- Harris, Midori;
- Hill, David;
- Knoell, Ralph;
- Laveder, Paolo;
- Mittempergher, Lorenza;
- Nori, Alessandra;
- Reggiani, Carlo;
- Sorrentino, Vincenzo;
- Volpe, Pompeo;
- Zara, Ivano;
- Valle, Giorgio;
- Clark, Jennifer Deegan née
Publication type:
Article
Reporting and connecting cell type names and gating definitions through ontologies.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 259, doi. 10.1186/s12859-019-2725-5
By:
- Overton, James A.;
- Vita, Randi;
- Dunn, Patrick;
- Burel, Julie G.;
- Bukhari, Syed Ahmad Chan;
- Cheung, Kei-Hoi;
- Kleinstein, Steven H.;
- Diehl, Alexander D.;
- Peters, Bjoern
Publication type:
Article
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 237, doi. 10.1186/s12859-019-2723-7
By:
- He, Yongqun;
- Duncan, William D.;
- Cooper, Daniel J.;
- Hansen, Jens;
- Iyengar, Ravi;
- Ong, Edison;
- Walker, Kendal;
- Tibi, Omar;
- Smith, Sam;
- Serra, Lucas M.;
- Zheng, Jie;
- Sarntivijai, Sirarat;
- Schürer, Stephan;
- O'Shea, K. Sue;
- Diehl, Alexander D.
Publication type:
Article
An ontology for representing hematologic malignancies: the cancer cell ontology.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 231, doi. 10.1186/s12859-019-2722-8
By:
- Serra, Lucas M.;
- Duncan, William D.;
- Diehl, Alexander D.
Publication type:
Article
Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 227, doi. 10.1186/s12859-019-2721-9
By:
- Sarntivijai, Sirarat;
- He, Yongqun;
- Diehl, Alexander D.
Publication type:
Article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
By:
- Diehl, Alexander D.;
- Meehan, Terrence F.;
- Bradford, Yvonne M.;
- Brush, Matthew H.;
- Dahdul, Wasila M.;
- Dougall, David S.;
- Yongqun He;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Sarntivijai, Sirarat;
- Van Slyke, Ceri E.;
- Vasilevsky, Nicole A.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Mungall, Christopher J.
Publication type:
Article
Representing vision and blindness.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0058-0
By:
- Ray, Patrick L.;
- Cox, Alexander P.;
- Jensen, Mark;
- Allen, Travis;
- Duncan, William;
- Diehl, Alexander D.
Publication type:
Article
The neurological disease ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-42
By:
- Jensen, Mark;
- Cox, Alexander P.;
- Chaudhry, Naveed;
- Ng, Marcus;
- Sule, Donat;
- Duncan, William;
- Weinstock-Guttman, Bianca;
- Smith, Barry;
- Ruttenberg, Alan;
- Szigeti, Kinga;
- Diehl, Alexander D.;
- Ray, Patrick
Publication type:
Article
Cloninger’s typology and treatment outcome in alcohol-dependent subjects during pharmacotherapy with naltrexone.
Published in:
Addiction Biology, 2008, v. 13, n. 1, p. 124, doi. 10.1111/j.1369-1600.2007.00073.x
By:
- Kiefer, Falk;
- Jiménez-Arriero, Miguel Angel;
- Klein, Oliver;
- Diehl, Alexander;
- Rubio, Gabriel
Publication type:
Article
Cells in experimental life sciences - challenges and solution to the rapid evolution of knowledge.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1976-2
By:
- Sarntivijai, Sirarat;
- Diehl, Alexander D.;
- Yongqun He
Publication type:
Article

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