Works matching AU Amann, Rudolf

Results: 154

Comparative metagenomics indicates metabolic niche differentiation of benthic and planktonic Woeseiaceae.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00732-3

By:

Viver, Tomeu;
Knittel, Katrin;
Amann, Rudolf;
Orellana, Luis H.

Publication type:

Article

Ecological success of extreme halophiles subjected to recurrent osmotic disturbances is primarily driven by congeneric species replacement.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae215

By:

Bustos-Caparros, Esteban;
Viver, Tomeu;
Gago, Juan F;
Rodriguez-R, Luis M;
Hatt, Janet K;
Venter, Stephanus N;
Fuchs, Bernhard M;
Amann, Rudolf;
Bosch, Rafael;
Konstantinidis, Konstantinos T;
Rossello-Mora, Ramon

Publication type:

Article

Bacterial chemolithoautotrophy in ultramafic plumes along the Mid-Atlantic Ridge.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae165

By:

Dede, Bledina;
Reeves, Eoghan P;
Walter, Maren;
Bach, Wolfgang;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Niche separation in bacterial communities and activities in porewater, loosely attached, and firmly attached fractions in permeable surface sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae159

By:

Moncada, Chyrene;
Arnosti, Carol;
Brüwer, Jan D;
de Beer, Dirk;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Taxonomic and functional stability overrules seasonality in polar benthic microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad005

By:

Miksch, Sebastian;
Orellana, Luis H;
Oggerin de Orube, Monike;
Vidal-Melgosa, Silvia;
Solanki, Vipul;
Hehemann, Jan-Hendrik;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 5, p. 339, doi. 10.1038/nrmicro1888

By:

Amann, Rudolf;
Fuchs, Bernhard M.

Publication type:

Article

RRNA based identification and detection systems for rhizobia and other bacteria.

Published in:

Plant & Soil, 1998, v. 204, n. 1, p. 1, doi. 10.1023/A:1004350708767

By:

Ludwig, Wolfgang;
Amann, Rudolf;
Martinez-Romero, Esperanza;
Schönhuber, Wilhelm;
Bauer, Stephan;
Neef, Alexander;
Schleifer, Karl-Heinz

Publication type:

Article

Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments.

Published in:

Environmental Microbiology, 2024, v. 26, n. 8, p. 1, doi. 10.1111/1462-2920.16687

By:

Knittel, Katrin;
Miksch, Sebastian;
Moncada, Chyrene;
Silva‐Solar, Sebastian;
Moye, Jannika;
Amann, Rudolf;
Arnosti, Carol

Publication type:

Article

Pulsed inputs of high molecular weight organic matter shift the mechanisms of substrate utilisation in marine bacterial communities.

Published in:

Environmental Microbiology, 2024, v. 26, n. 2, p. 1, doi. 10.1111/1462-2920.16580

By:

Brown, Sarah;
Lloyd, C. Chad;
Giljan, Greta;
Ghobrial, Sherif;
Amann, Rudolf;
Arnosti, Carol

Publication type:

Article

Strong seasonal differences of bacterial polysaccharide utilization in the North Sea over an annual cycle.

Published in:

Environmental Microbiology, 2022, v. 24, n. 5, p. 2333, doi. 10.1111/1462-2920.15997

By:

Giljan, Greta;
Arnosti, Carol;
Kirstein, Inga V.;
Amann, Rudolf;
Fuchs, Bernhard M.

Publication type:

Article

Diversity and biomass dynamics of unicellular marine fungi during a spring phytoplankton bloom.

Published in:

Environmental Microbiology, 2021, v. 23, n. 1, p. 448, doi. 10.1111/1462-2920.15331

By:

Priest, Taylor;
Fuchs, Bernhard;
Amann, Rudolf;
Reich, Marlis

Publication type:

Article

Short‐term changes in polysaccharide utilization mechanisms of marine bacterioplankton during a spring phytoplankton bloom.

Published in:

Environmental Microbiology, 2020, v. 22, n. 5, p. 1884, doi. 10.1111/1462-2920.14971

By:

Reintjes, Greta;
Fuchs, Bernhard M.;
Scharfe, Mirco;
Wiltshire, Karen H.;
Amann, Rudolf;
Arnosti, Carol

Publication type:

Article

Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy.

Published in:

Environmental Microbiology, 2020, v. 22, n. 3, p. 819, doi. 10.1111/1462-2920.14934

By:

Konstantinidis, Konstantinos T.;
Rosselló‐Móra, Ramon;
Amann, Rudolf

Publication type:

Article

Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities.

Published in:

Environmental Microbiology, 2019, v. 21, n. 11, p. 4300, doi. 10.1111/1462-2920.14790

By:

Viver, Tomeu;
Orellana, Luis H.;
Díaz, Sara;
Urdiain, Mercedes;
Ramos‐Barbero, María Dolores;
González‐Pastor, José E.;
Oren, Aharon;
Hatt, Janet K.;
Amann, Rudolf;
Antón, Josefa;
Konstantinidis, Konstantinos T.;
Rosselló‐Móra, Ramon

Publication type:

Article

In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3896, doi. 10.1111/1462-2920.14739

By:

Pjevac, Petra;
Dyksma, Stefan;
Goldhammer, Tobias;
Mujakić, Izabela;
Koblížek, Michal;
Mußmann, Marc;
Amann, Rudolf;
Orlić, Sandi

Publication type:

Article

Microbial metal‐sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses.

Published in:

Environmental Microbiology, 2019, v. 21, n. 2, p. 682, doi. 10.1111/1462-2920.14514

By:

Meier, Dimitri V.;
Pjevac, Petra;
Bach, Wolfgang;
Markert, Stephanie;
Schweder, Thomas;
Jamieson, John;
Petersen, Sven;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Alpha‐ and beta‐mannan utilization by marine Bacteroidetes.

Published in:

Environmental Microbiology, 2018, v. 20, n. 11, p. 4127, doi. 10.1111/1462-2920.14414

By:

Chen, Jing;
Robb, Craig S.;
Unfried, Frank;
Kappelmann, Lennart;
Markert, Stephanie;
Song, Tao;
Harder, Jens;
Avcı, Burak;
Becher, Dörte;
Xie, Ping;
Amann, Rudolf I.;
Hehemann, Jan‐Hendrik;
Schweder, Thomas;
Teeling, Hanno

Publication type:

Article

High resilience and resistance of solar saltern microbial assemblages exposed to different environmental pressures.

Published in:

Studia Universitatis Babeş-Bolyai, Biologia, 2019, v. 64, n. 1, p. 31

By:

Viver, Tomeu;
Orellana, Luis H.;
Diaz, Sara;
Urdiain, Mercedes;
Ramos-Barbero, María Dolores;
González-Pastor, Jose E.;
Oren, Aharon;
Amann, Rudolf;
Antón, Josefa;
Konstantinidis, Konstantinos T.;
Rosselló-Móra, Ramon

Publication type:

Article

Predominance of β-proteobacteria in summer melt pools on Arctic pack ice.

Published in:

Limnology & Oceanography, 2004, v. 49, n. 4, p. 1013, doi. 10.4319/lo.2004.49.4.1013

By:

Brinkmeyer, Robin;
Glöckner, Frank-Oliver;
Helmke, Elisabeth;
Amann, Rudolf

Publication type:

Article

Intraspecific comparative analysis of the speciesSalinibacter ruber.

Published in:

Extremophiles, 2005, v. 9, n. 2, p. 151, doi. 10.1007/s00792-005-0430-y

By:

Peña, Arantxa;
Valens, Maria;
Santos, Fernando;
Buczolits, Sandra;
Antón, Josefa;
Kämpfer, Peter;
Busse, Hans-Jürgen;
Amann, Rudolf;
Rosselló-Mora, Ramon

Publication type:

Article

Direct proof for the presence and expression of two 5% different 16S rRNA genes in individual cells of Haloarcula marismortui.

Published in:

Extremophiles, 2000, v. 4, n. 6, p. 373, doi. 10.1007/s007920070007

By:

Amann, Gudrun;
Stetter, K. O.;
Llobet-Brossa, Enric;
Amann, Rudolf;
Antón, Josefa

Publication type:

Article

Massive Regime Shifts and High Activity of Heterotrophic Bacteria in an Ice-Covered Lake.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0113611

By:

Bižić-Ionescu, Mina;
Amann, Rudolf;
Grossart, Hans-Peter

Publication type:

Article

Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand).

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072627

By:

Ruff, S. Emil;
Arnds, Julia;
Knittel, Katrin;
Amann, Rudolf;
Wegener, Gunter;
Ramette, Alban;
Boetius, Antje

Publication type:

Article

Utilization of tmRNA sequences for bacterial identification.

Published in:

BMC Microbiology, 2001, v. 1, p. 20, doi. 10.1186/1471-2180-1-20

By:

Schönhuber, Wilhelm;
Le Bourhis, Guenhael;
Tremblay, Josselyne;
Amann, Rudolf;
Kulakauskas, Saulius

Publication type:

Article

Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 58, doi. 10.4056/sigs.3777412

By:

Finster, Kai;
Kjeldsen, Kasper;
Kube, Michael;
Reinhardt, Richard;
Mussmann, Marc;
Amann, Rudolf;
Schreiber, Lars

Publication type:

Article

Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.718297

By:

Isaac, Ashley;
Francis, Ben;
Amann, Rudolf I.;
Amin, Shady A.

Publication type:

Article

Particle Collection in Imhoff Sedimentation Cones Enriches Both Motile Chemotactic and Particle-Attached Bacteria.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.643730

By:

Heins, Anneke;
Reintjes, Greta;
Amann, Rudolf I.;
Harder, Jens

Publication type:

Article

Extensive Microbial Processing of Polysaccharides in the South Pacific Gyre via Selfish Uptake and Extracellular Hydrolysis.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.583158

By:

Reintjes, Greta;
Fuchs, Bernhard M.;
Amann, Rudolf;
Arnosti, Carol

Publication type:

Article

The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa.

Published in:

Environmental Microbiology, 2017, v. 19, n. 8, p. 3039, doi. 10.1111/1462-2920.13763

By:

Viver, Tomeu;
Orellana, Luis H.;
Hatt, Janet K.;
Urdiain, Mercedes;
Díaz, Sara;
Richter, Michael;
Antón, Josefa;
Avian, Massimo;
Amann, Rudolf;
Konstantinidis, Konstantinos T.;
Rosselló ‐ Móra, Ramon

Publication type:

Article

Aquatic adaptation of a laterally acquired pectin degradation pathway in marine gammaproteobacteria.

Published in:

Environmental Microbiology, 2017, v. 19, n. 6, p. 2320, doi. 10.1111/1462-2920.13726

By:

Hehemann, Jan ‐ Hendrik;
Truong, Le Van;
Unfried, Frank;
Welsch, Norma;
Kabisch, Johannes;
Heiden, Stefan E.;
Junker, Sabryna;
Becher, Dörte;
Thürmer, Andrea;
Daniel, Rolf;
Amann, Rudolf;
Schweder, Thomas

Publication type:

Article

Genomic and physiological analyses of ' Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms.

Published in:

Environmental Microbiology, 2017, v. 19, n. 3, p. 1209, doi. 10.1111/1462-2920.13646

By:

Avcı, Burak;
Hahnke, Richard L.;
Chafee, Meghan;
Fischer, Tanja;
Gruber ‐ Vodicka, Harald;
Tegetmeyer, Halina E.;
Harder, Jens;
Fuchs, Bernhard M.;
Amann, Rudolf I.;
Teeling, Hanno

Publication type:

Article

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

Published in:

Environmental Microbiology, 2017, v. 19, n. 1, p. 70, doi. 10.1111/1462-2920.13432

By:

Barrero ‐ Canosa, Jimena;
Moraru, Cristina;
Zeugner, Laura;
Fuchs, Bernhard M.;
Amann, Rudolf

Publication type:

Article

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4348, doi. 10.1111/1462-2920.13304

By:

Meier, Dimitri V.;
Bach, Wolfgang;
Girguis, Peter R.;
Gruber ‐ Vodicka, Harald R.;
Reeves, Eoghan P.;
Richter, Michael;
Vidoudez, Charles;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4456, doi. 10.1111/1462-2920.13429

By:

Bennke, Christin M.;
Krüger, Karen;
Kappelmann, Lennart;
Huang, Sixing;
Gobet, Angélique;
Schüler, Margarete;
Barbe, Valérie;
Fuchs, Bernhard M.;
Michel, Gurvan;
Teeling, Hanno;
Amann, Rudolf I.

Publication type:

Article

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans Dsij<sup>T</sup>.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4610, doi. 10.1111/1462-2920.13584

By:

Barbeyron, Tristan;
Thomas, François;
Barbe, Valérie;
Teeling, Hanno;
Schenowitz, Chantal;
Dossat, Carole;
Goesmann, Alexander;
Leblanc, Catherine;
Oliver Glöckner, Frank;
Czjzek, Mirjam;
Amann, Rudolf;
Michel, Gurvan

Publication type:

Article

Chlamydial seasonal dynamics and isolation of ' C andidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake.

Published in:

Environmental Microbiology, 2016, v. 18, n. 8, p. 2405, doi. 10.1111/1462-2920.13111

By:

Pizzetti, Ilaria;
Schulz, Frederik;
Tyml, Tomáš;
Fuchs, Bernhard M.;
Amann, Rudolf;
Horn, Matthias;
Fazi, Stefano

Publication type:

Article

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3500, doi. 10.1111/1462-2920.12466

By:

Bižić ‐ Ionescu, Mina;
Zeder, Michael;
Ionescu, Danny;
Orlić, Sandi;
Fuchs, Bernhard M.;
Grossart, Hans ‐ Peter;
Amann, Rudolf

Publication type:

Article

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea.

Published in:

Environmental Microbiology, 2015, v. 17, n. 10, p. 3515, doi. 10.1111/1462-2920.12479

By:

Hahnke, Richard L.;
Bennke, Christin M.;
Fuchs, Bernhard M.;
Mann, Alexander J.;
Rhiel, Erhard;
Teeling, Hanno;
Amann, Rudolf;
Harder, Jens

Publication type:

Article

Microbial lipids reveal carbon assimilation patterns on hydrothermal sulfide chimneys.

Published in:

Environmental Microbiology, 2014, v. 16, n. 11, p. 3515, doi. 10.1111/1462-2920.12525

By:

Reeves, Eoghan P.;
Yoshinaga, Marcos Y.;
Pjevac, Petra;
Goldenstein, Nadine I.;
Peplies, Jörg;
Meyerdierks, Anke;
Amann, Rudolf;
Bach, Wolfgang;
Hinrichs, Kai ‐ Uwe

Publication type:

Article

Distribution of a consortium between unicellular algae and the N<sub>2</sub> fixing cyanobacterium UCYN- A in the North Atlantic Ocean.

Published in:

Environmental Microbiology, 2014, v. 16, n. 10, p. 3153, doi. 10.1111/1462-2920.12431

By:

Krupke, Andreas;
Lavik, Gaute;
Halm, Hannah;
Fuchs, Bernhard M.;
Amann, Rudolf I.;
Kuypers, Marcel M. M.

Publication type:

Article

Single-cell and population level viral infection dynamics revealed by phage FISH, a method to visualize intracellular and free viruses.

Published in:

Environmental Microbiology, 2013, v. 15, n. 8, p. 2306, doi. 10.1111/1462-2920.12100

By:

Allers, Elke;
Moraru, Cristina;
Duhaime, Melissa B.;
Beneze, Erica;
Solonenko, Natalie;
Barrero ‐ Canosa, Jimena;
Amann, Rudolf;
Sullivan, Matthew B.

Publication type:

Article

Complete genome, catabolic sub-proteomes and key-metabolites of Desulfobacula toluolica Tol2, a marine, aromatic compound-degrading, sulfate-reducing bacterium.

Published in:

Environmental Microbiology, 2013, v. 15, n. 5, p. 1334, doi. 10.1111/j.1462-2920.2012.02885.x

By:

Wöhlbrand, Lars;
Jacob, Jacob H.;
Kube, Michael;
Mussmann, Marc;
Jarling, René;
Beck, Alfred;
Amann, Rudolf;
Wilkes, Heinz;
Reinhardt, Richard;
Rabus, Ralf

Publication type:

Article

Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments.

Published in:

Environmental Microbiology, 2012, v. 14, n. 10, p. 2689, doi. 10.1111/j.1462-2920.2012.02832.x

By:

Kleindienst, Sara;
Ramette, Alban;
Amann, Rudolf;
Knittel, Katrin

Publication type:

Article

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean.

Published in:

Environmental Microbiology, 2012, v. 14, n. 1, p. 52, doi. 10.1111/j.1462-2920.2011.02555.x

By:

Gómez-Pereira, Paola R.;
Schüler, Margarete;
Fuchs, Bernhard M.;
Bennke, Christin;
Teeling, Hanno;
Waldmann, Jost;
Richter, Michael;
Barbe, Valérie;
Bataille, Elodie;
Glöckner, Frank Oliver;
Amann, Rudolf

Publication type:

Article

Bacterial sulfur cycling shapes microbial communities in surface sediments of an ultramafic hydrothermal vent field.

Published in:

Environmental Microbiology, 2011, v. 13, n. 10, p. 2633, doi. 10.1111/j.1462-2920.2011.02530.x

By:

Schauer, Regina;
Røy, Hans;
Augustin, Nico;
Gennerich, Hans-Hermann;
Peters, Marc;
Wenzhoefer, Frank;
Amann, Rudolf;
Meyerdierks, Anke

Publication type:

Article

Response of sulfate-reducing bacteria to an artificial oil-spill in a coastal marine sediment.

Published in:

Environmental Microbiology, 2011, v. 13, n. 6, p. 1488, doi. 10.1111/j.1462-2920.2011.02451.x

By:

Suárez-Suárez, Ana;
López-López, Arantxa;
Tovar-Sánchez, Antonio;
Yarza, Pablo;
Orfila, Alejandro;
Terrados, Jorge;
Arnds, Julia;
Marqués, Silvia;
Niemann, Helge;
Schmitt-Kopplin, Philippe;
Amann, Rudolf;
Rosselló-Móra, Ramón

Publication type:

Article

Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment.

Published in:

Environmental Microbiology, 2011, v. 13, n. 3, p. 758, doi. 10.1111/j.1462-2920.2010.02380.x

By:

Lenk, Sabine;
Arnds, Julia;
Zerjatke, Katrice;
Musat, Niculina;
Amann, Rudolf;
Mußmann, Marc

Publication type:

Article

GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms C. Moraru et al. GeneFISH in environmental microorganisms.

Published in:

Environmental Microbiology, 2010, v. 12, n. 11, p. 3057, doi. 10.1111/j.1462-2920.2010.02281.x

By:

Moraru, Cristina;
Lam, Phyllis;
Fuchs, Bernhard M.;
Kuypers, Marcel M. M.;
Amann, Rudolf

Publication type:

Article

Identification of the dominant sulfate-reducing bacterial partner of anaerobic methanotrophs of the ANME-2 clade.

Published in:

Environmental Microbiology, 2010, v. 12, n. 8, p. 2327, doi. 10.1111/j.1462-2920.2010.02275.x

By:

Schreiber, Lars;
Holler, Thomas;
Knittel, Katrin;
Meyerdierks, Anke;
Amann, Rudolf

Publication type:

Article

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group.

Published in:

Environmental Microbiology, 2010, v. 12, n. 2, p. 422, doi. 10.1111/j.1462-2920.2009.02083.x

By:

Meyerdierks, Anke;
Kube, Michael;
Kostadinov, Ivaylo;
Teeling, Hanno;
Glöckner, Frank Oliver;
Reinhardt, Richard;
Amann, Rudolf

Publication type:

Article