Works matching Viral genomes

Results: 5000

Accumulation of copy-back viral genomes during respiratory syncytial virus infection is preceded by diversification of the copy-back viral genome population followed by selection.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac091

By:

Felt, Sébastien A;
Achouri, Emna;
Faber, Sydney R;
López, Carolina B

Publication type:

Article

A Novel Approach of Antiviral Drugs Targeting Viral Genomes.

Published in:

Microorganisms, 2022, v. 10, n. 8, p. 1552, doi. 10.3390/microorganisms10081552

By:

Hoang, Phuong Thi;
Luong, Quynh Xuan Thi;
Ayun, Ramadhani Qurrota;
Lee, Yongjun;
Vo, Thuy Thi Bich;
Kim, Taehyun;
Lee, Sukchan

Publication type:

Article

Nanoparticle-mediated delivery of oncolytic viral genomes: an innovative strategy for tumor-targeted immunotherapy.

Published in:

Cancer Nanotechnology, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s12645-025-00322-5

By:

Yang, Junhan;
Liu, Binlei

Publication type:

Article

Deletion viral genome diversity among bovine viral diarrhea virus (BVDV) 1a and 1b strains.

Published in:

Virology Journal, 2025, v. 22, n. 1, p. 1, doi. 10.1186/s12985-025-02773-z

By:

Holthausen, David J.;
Bayles, Darrell O.;
Neill, John D.;
Dassanayake, Rohana P.;
Falkenberg, Shollie M.;
Menghwar, Harish;
Casas, Eduardo

Publication type:

Article

Unexpected lessons from the neglected: How defective viral genomes became important again.

Published in:

PLoS Pathogens, 2019, v. 15, n. 01, p. 1, doi. 10.1371/journal.ppat.1007450

By:

López, Carolina B.

Publication type:

Article

VirAmp: a galaxy-based viral genome assembly pipeline.

Published in:: GigaScience, 2015, v. 4, n. 1, p. N.PAG, doi. 10.1186/s13742-015-0060-y
Publication type:: Article

Maize Elongin C interacts with the viral genome-linked protein, VPg, of Sugarcane mosaic virus and facilitates virus infection.

Published in:

New Phytologist, 2014, v. 203, n. 4, p. 1291, doi. 10.1111/nph.12890

By:

Zhu, Min;
Chen, Yuting;
Ding, Xin Shun;
Webb, Stephen L.;
Zhou, Tao;
Nelson, Richard S.;
Fan, Zaifeng

Publication type:

Article

Clinical Significance of Viral Genome Persistence in the Myocardium of Patients with Dilated Cardiomyopathy.

Published in:

Intervirology, 2016, v. 58, n. 6, p. 350, doi. 10.1159/000443375

By:

Nowalany-Kozielska, Ewa;
Kozieł, Monika;
Domal-Kwiatkowska, Dorota;
Wojciechowska, Celina;
Jacheć, Wojciech;
Kawecki, Damian;
Tomasik, andrzej;
Przywara-Chowaniec, Brygida;
Węglarz, Ludmiła;
Reichman-Warmusz, Edyta;
Wojnicz, Romuald

Publication type:

Article

Potential of the Other Genetic Information Coded by the Viral RNA Genomes as Antiviral Target.

Published in:

Pharmaceuticals (14248247), 2019, v. 12, n. 1, p. 38, doi. 10.3390/ph12010038

By:

Berzal-Herranz, Alfredo;
Romero-López, Cristina;
Berzal-Herranz, Beatriz;
Ramos-Lorente, Sara

Publication type:

Article

The Role of Nuclear Antiviral Factors against Invading DNA Viruses: The Immediate Fate of Incoming Viral Genomes.

Published in:

Viruses (1999-4915), 2016, v. 8, n. 10, p. 290, doi. 10.3390/v8100290

By:

Tetsuro Komatsu;
Kyosuke Nagata;
Wodrich, Harald

Publication type:

Article

Engineering large viral DNA genomes using the CRISPR-Cas9 system.

Published in:

Microbiology & Immunology, 2014, v. 58, n. 9, p. 513, doi. 10.1111/1348-0421.12180

By:

Suenaga, Tadahiro;
Kohyama, Masako;
Hirayasu, Kouyuki;
Arase, Hisashi

Publication type:

Article

Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00469

By:

Gupta, Ankit;
Kumar, Sanjiv;
Prasoodanan, Vishnu P. K.;
Harish, K.;
Sharma, Ashok K.;
Sharma, Vineet K.

Publication type:

Article

VirusTAP: Viral Genome-Targeted Assembly Pipeline.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00032

By:

Akifumi Yamashita;
Tsuyoshi Sekizuka;
Makoto Kuroda;
Schürch, Anita;
Yoshinori Ito;
Zagordi, Osvaldo

Publication type:

Article

The landscape of 142 Epstein–Barr viral whole genomes in gastric cancer.

Published in:

Journal of Gastroenterology, 2025, v. 60, n. 1, p. 55, doi. 10.1007/s00535-024-02170-3

By:

Kojima, Yuki;
Hamada, Motoharu;
Naruse, Azumi;
Goto, Kimitoshi;
Khine, Htet Thiri;
Arai, Haruto;
Akutsu, Yuta;
Satou, Akira;
Nakaguro, Masato;
Kato, Seiichi;
Kodera, Yasuhiro;
Yatabe, Yasushi;
Torii, Yuka;
Kawada, Jun-ichi;
Murata, Takayuki;
Kimura, Hiroshi;
Takiguchi, Shuji;
Inagaki, Hiroshi;
Kataoka, Hiromi;
Okuno, Yusuke

Publication type:

Article

KSHV encoded ORF59 modulates histone arginine methylation of the viral genome to promote viral reactivation.

Published in:

PLoS Pathogens, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.ppat.1006482

By:

Strahan, Roxanne C.;
McDowell-Sargent, Maria;
Uppal, Timsy;
Purushothaman, Pravinkumar;
Verma, Subhash C.

Publication type:

Article

Identification, functional analysis, and clinical applications of defective viral genomes.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1642520

By:

Yan, Xiaowei;
Pan, Yitong;
Li, Peiying;
Zhu, Li;
Yu, Jianhai;
Shen, Chenguang;
Zhang, Bao;
Zhao, Wei

Publication type:

Article

Chikungunya Virus RNA Secondary Structures Impact Defective Viral Genome Production.

Published in:

Microorganisms, 2024, v. 12, n. 9, p. 1794, doi. 10.3390/microorganisms12091794

By:

Levi, Laura I.;
Madden, Emily A.;
Boussier, Jeremy;
Erazo, Diana;
Sanders, Wes;
Vallet, Thomas;
Bernhauerova, Veronika;
Moorman, Nathaniel J.;
Heise, Mark T.;
Vignuzzi, Marco

Publication type:

Article

Characteristics of the a sequence of the duck Plague virus genome and specific cleavage of the viral genome based on the a sequence.

Published in:

Veterinary Research, 2024, v. 55, n. 1, p. 1, doi. 10.1186/s13567-023-01256-9

By:

Yang, Qiao;
Feng, Yaya;
Zhang, Yuanxin;
Wang, Mingshu;
Jia, Renyong;
Zhu, Dekang;
Chen, Shun;
Liu, Mafeng;
Zhao, Xinxin;
Wu, Ying;
Zhang, Shaqiu;
Tian, Bin;
Ou, Xumin;
Mao, Sai;
Huang, Juan;
Gao, Qun;
Sun, Di;
Wu, Zhen;
He, Yu;
Zhang, Ling

Publication type:

Article

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222271

By:

Tampuu, Ardi;
Bzhalava, Zurab;
Dillner, Joakim;
Vicente, Raul

Publication type:

Article

Discovering and sequencing new plant viral genomes by next-generation sequencing: description of a practical pipeline.

Published in:

Annals of Applied Biology, 2017, v. 170, n. 3, p. 301, doi. 10.1111/aab.12345

By:

Blawid, R.;
Silva, J.M.F.;
Nagata, T.

Publication type:

Article

DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 5, p. 1114, doi. 10.3390/v14051114

By:

Olmo-Uceda, Maria J.;
Muñoz-Sánchez, Juan C.;
Lasso-Giraldo, Wilberth;
Arnau, Vicente;
Díaz-Villanueva, Wladimiro;
Elena, Santiago F.

Publication type:

Article

Preferential cleavage of the coronavirus defective viral genome by cellular endoribonuclease with characteristics of RNase L.

Published in:

Virology Journal, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12985-024-02549-x

By:

Lin, Ching-Hung;
Lin, Hsuan-Yung;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Hsieh, Feng-Cheng;
Yang, Cheng-Yao;
Wu, Hung-Yi

Publication type:

Article

Identification of the protein coding capability of coronavirus defective viral genomes by mass spectrometry.

Published in:

Virology Journal, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12985-023-02252-3

By:

Lin, Ching-Hung;
Hsieh, Feng-Cheng;
Lai, Chien-Chen;
Wang, Wei-Chen;
Kuo, Cheng-Yu;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Tam, Hon-Man-Herman;
Yang, Cheng-Yao;
Wu, Hung-Yi

Publication type:

Article

Unveiling the biology of defective viral genomes in vitro and in vivo: implications for gene expression and pathogenesis of coronavirus.

Published in:

Virology Journal, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12985-023-02189-7

By:

Lin, Ching-Hung;
Chen, BoJia;
Chao, Day-Yu;
Hsieh, Feng-Cheng;
Yang, Chun-Chun;
Hsu, Hsuan-Wei;
Tam, Hon-Man-Herman;
Wu, Hung-Yi

Publication type:

Article

Occurrence of Antibiotics, Antibiotic Resistance Genes and Viral Genomes in Wastewater Effluents and Their Treatment by a Pilot Scale Nanofiltration Unit.

Published in:

Membranes, 2021, v. 11, n. 1, p. 9, doi. 10.3390/membranes11010009

By:

Cristóvão, Maria Beatriz;
Tela, Solomon;
Silva, Andreia Filipa;
Oliveira, Micaela;
Bento-Silva, Andreia;
Bronze, Maria Rosário;
Crespo, Maria Teresa Barreto;
Crespo, João Goulão;
Nunes, Mónica;
Pereira, Vanessa Jorge

Publication type:

Article

Comparisons of classification methods for viral genomes and protein families using alignment-free vectorization.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2018, v. 17, n. 4, p. N.PAG, doi. 10.1515/sagmb-2018-0004

By:

Huang, Hsin-Hsiung;
Hao, Shuai;
Alarcon, Saul;
Yang, Jie

Publication type:

Article

Replication-Coupled Recruitment of Viral and Cellular Factors to Herpes Simplex Virus Type 1 Replication Forks for the Maintenance and Expression of Viral Genomes.

Published in:

PLoS Pathogens, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.ppat.1006166

By:

Dembowski, Jill A.;
Dremel, Sarah E.;
DeLuca, Neal A.

Publication type:

Article

It’s in the mix: Reassortment of segmented viral genomes.

Published in:

PLoS Pathogens, 2018, v. 14, n. 9, p. 1, doi. 10.1371/journal.ppat.1007200

By:

Lowen, Anice C.

Publication type:

Article

Bioinformatic analysis of defective viral genomes in SARS-CoV-2 and its impact on population infection characteristics.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1341906

By:

Zhaobin Xu;
Qingzhi Peng;
Jian Song;
Hongmei Zhang;
Dongqing Wei;
Demongeot, Jacques;
Qiangcheng Zeng

Publication type:

Article

Diagnostic Performance of a Magnetic Field-Enhanced Agglutination Readout in Detecting Either Viral Genomes or Host Antibodies in Arbovirus Infection.

Published in:

Microorganisms, 2021, v. 9, n. 4, p. 674, doi. 10.3390/microorganisms9040674

By:

Leon, Fanny;
Pinchon, Elena;
Temurok, Nevzat;
Morvan, François;
Vasseur, Jean-Jacques;
Clot, Martine;
Foulongne, Vincent;
Cantaloube, Jean-François;
Vande Perre, Philippe;
Molès, Jean-Pierre;
Daynès, Aurélien;
Fournier-Wirth, Chantal

Publication type:

Article

INVERTED REPEATS IN VIRAL GENOMES.

Published in:

Fluctuation & Noise Letters, 2005, v. 5, n. 2, p. L193

By:

Spanó, M.;
Lillo, F.;
Miccichè, S.;
Mantegna, R. N.;
Ebeling, Werner;
Spagnolo, Bernardo

Publication type:

Article

VirGenA: a reference-based assembler for variable viral genomes.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 15, doi. 10.1093/bib/bbx079

By:

Fedonin, Gennady G;
Fantin, Yury S;
Favorov, Alexnader V;
Shipulin, German A;
Neverov, Alexey D

Publication type:

Article

Propagation and Characterization of Influenza Virus Stocks That Lack High Levels of Defective Viral Genomes and Hemagglutinin Mutations.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00326

By:

López, Carolina B.;
Jia Xue;
Chambers, Benjamin S.;
Hensley, Scott E.

Publication type:

Article

Viral genome changes and the impact of viral genome persistence in myocardium of patients with inflammatory cardiomyopathy.

Published in:

2018

By:

Mlejnek, Dalibor;
Krejci, Jan;
Hude, Petr;
Ozabalova, Eva;
Zampachova, Vita;
Stepanova, Radka;
Svobodová, Iva;
Freiberger, Tomas;
Nemcova, Eva;
Spinarova, Lenka

Publication type:

journal article

ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 714, doi. 10.1093/bioinformatics/btaa743

By:

Moshiri, Niema

Publication type:

Article

Prediction of conserved long-range RNA-RNA interactions in full viral genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 2928, doi. 10.1093/bioinformatics/btw323

By:

Fricke, Markus;
Marz, Manja

Publication type:

Article

Alignment-free detection of local similarity among viral and bacterial genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 11, p. 1466, doi. 10.1093/bioinformatics/btr176

By:

Domazet-Lošo, Mirjana;
Haubold, Bernhard

Publication type:

Article

Surfing the Waves of SARS-CoV-2: Analysis of Viral Genome Variants Using an NGS Survey in Verona, Italy.

Published in:

Microorganisms, 2024, v. 12, n. 5, p. 846, doi. 10.3390/microorganisms12050846

By:

Tonon, Emil;
Cecchetto, Riccardo;
Diani, Erica;
Medaina, Nicoletta;
Turri, Giona;
Lagni, Anna;
Lotti, Virginia;
Gibellini, Davide

Publication type:

Article

HPV+ oropharyngeal squamous cell carcinomas from patients with two tumors display synchrony of viral genomes yet discordant mutational profiles and signatures.

Published in:

Carcinogenesis, 2021, v. 42, n. 1, p. 14, doi. 10.1093/carcin/bgaa111

By:

Faden, Daniel L;
Langenbucher, Adam;
Kuhs, Krystle;
Lewis, James S;
Mirabello, Lisa;
Yeager, Meredith;
Boland, Joseph F;
Bass, Sara;
Steinberg, Mia;
Cullen, Michael;
Lawrence, Michael S;
Ferris, Robert L

Publication type:

Article

CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes.

Published in:

Mobile DNA, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13100-022-00288-w

By:

Vassilieff, Héléna;
Haddad, Sana;
Jamilloux, Véronique;
Choisne, Nathalie;
Sharma, Vikas;
Giraud, Delphine;
Wan, Mariène;
Serfraz, Saad;
Geering, Andrew D. W.;
Teycheney, Pierre-Yves;
Maumus, Florian

Publication type:

Article

Euclidean Distance Analysis Enables Nucleotide Skew Analysis in Viral Genomes.

Published in:

Computational & Mathematical Methods in Medicine, 2018, p. 1, doi. 10.1155/2018/6490647

By:

van Hemert, Formijn;
Jebbink, Maarten;
van der Ark, Andries;
Scholer, Frits;
Berkhout, Ben

Publication type:

Article

Predicting host taxonomic information from viral genomes: A comparison of feature representations.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.pcbi.1007894

By:

Young, Francesca;
Rogers, Simon;
Robertson, David L.

Publication type:

Article

Detection and sequencing of defective viral genomes in C6/36 cells persistently infected with dengue virus 2.

Published in:

Archives of Virology, 2013, v. 158, n. 3, p. 583, doi. 10.1007/s00705-012-1525-2

By:

Juárez-Martínez, Ariadna;
Vega-Almeida, Tania;
Salas-Benito, Mariana;
García-Espitia, Matilde;
Nova-Ocampo, Mónica;
Ángel, Rosa;
Salas-Benito, Juan

Publication type:

Article

Attenuation of a field Sendai virus isolate through egg-passages is associated with an impediment of viral genome replication in mouse respiratory cells.

Published in:

Archives of Virology, 2001, v. 146, n. 5, p. 893, doi. 10.1007/s007050170123

By:

Kiyotani, K.;
Sakaguchi, T.;
Fujii, Y.;
Yoshida, T.

Publication type:

Article

宿主蛋白核仁素与病毒基因组相互作用对牛肠道病毒复制影响的研究.

Published in:

Chinese Journal of Preventive Veterinary Medicine / Zhongguo Yufang Shouyi Xuebao, 2022, v. 44, n. 6, p. 598, doi. 10.3969/j.issn.1008-0589.202109022

By:

魏丹丹;
孙超;
常继涛;
于力

Publication type:

Article

A novel method for the capture-based purification of whole viral native RNA genomes.

Published in:

AMB Express, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13568-019-0772-y

By:

Tan, Cedric Chih Shen;
Maurer-Stroh, Sebastian;
Wan, Yue;
Sessions, October Michael;
de Sessions, Paola Florez

Publication type:

Article

Genome trimming by Borna disease viruses: Viral replication control or escape from cellular surveillance?

Published in:

Cellular & Molecular Life Sciences, 2007, v. 64, n. 9, p. 1038, doi. 10.1007/s00018-007-6545-9

By:

Schneider, U.;
Martin, A.;
Schwemmle, M.;
Staeheli, P.

Publication type:

Article

VIGOR, an annotation program for small viral genomes.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 451, doi. 10.1186/1471-2105-11-451

By:

Wang, Shiliang;
Sundaram, Jaideep P.;
Spiro, David

Publication type:

Article

Identification of functional cis-acting RNA elements in the hepatitis E virus genome required for viral replication.

Published in:

PLoS Pathogens, 2020, v. 16, n. 5, p. 1, doi. 10.1371/journal.ppat.1008488

By:

Ju, Xiaohui;
Xiang, Guangtao;
Gong, Mingli;
Yang, Rui;
Qin, Jierui;
Li, Yafei;
Nan, Yuchen;
Yang, Yonglin;
Zhang, Qiangfeng Cliff;
Ding, Qiang

Publication type:

Article

Annotation of selection strengths in viral genomes.

Published in:

Bioinformatics, 2007, v. 23, n. 22, p. 2978, doi. 10.1093/bioinformatics/btm472

By:

Stephen McCauley;
Saskia de Groot;
Thomas Mailund;
Jotun Hein

Publication type:

Article