Works matching Viral genetics

Results: 4785

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Published in:

PLoS Biology, 2017, v. 15, n. 6, p. 1, doi. 10.1371/journal.pbio.2001855

By:

Blanquart, François;
Wymant, Chris;
Cornelissen, Marion;
Gall, Astrid;
Bakker, Margreet;
Bezemer, Daniela;
Hall, Matthew;
Hillebregt, Mariska;
Ong, Swee Hoe;
Albert, Jan;
Bannert, Norbert;
Fellay, Jacques;
Fransen, Katrien;
Gourlay, Annabelle J.;
Grabowski, M. Kate;
Gunsenheimer-Bartmeyer, Barbara;
Günthard, Huldrych F.;
Kivelä, Pia;
Kouyos, Roger;
Laeyendecker, Oliver

Publication type:

Article

Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage.

Published in:

Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0064-x

By:

Zukurov, Jean P.;
do Nascimento-Brito, Sieberth;
Volpini, Angela C.;
Oliveira, Guilherme C.;
Janini, Luiz Mario R.;
Antoneli, Fernando

Publication type:

Article

Higher viral load and genetic diversity of HIV-1 in seminal compartments than in blood of seven Chinese men who have sex with men and have early HIV-1 infection.

Published in:

Microbiology & Immunology, 2017, v. 61, n. 6, p. 239, doi. 10.1111/1348-0421.12488

By:

Jiao, Yan‐Mei;
Chen, Guang‐Lei;
Zhu, Wei‐Jun;
Huang, Hui‐huang;
Fu, Jun‐liang;
Chen, Wei‐wei;
Shi, Ming;
Zhang, Tong;
Wu, Hao;
Wang, Fu‐Sheng

Publication type:

Article

Genetic shift of env V3 loop viral sequences in patients with HIV-associated neurocognitive disorder during antiretroviral therapy.

Published in:

Journal of NeuroVirology, 2013, v. 19, n. 6, p. 523, doi. 10.1007/s13365-013-0207-5

By:

Eggers, Christian;
Müller, Oliver;
Thordsen, Ingo;
Schreiber, Michael;
Methner, Axel

Publication type:

Article

Host and Viral Genetic Correlates of Clinical Definitions of HIV-1 Disease Progression.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011079

By:

Casado, Concepción;
Colombo, Sara;
Rauch, Andri;
Martínez, Raquel;
Günthard, Huldrych F.;
Garcia, Soledad;
Rodríguez, Carmen;
del Romero, Jorge;
Telenti, Amalio;
López-Galíndez, Cecilio

Publication type:

Article

Viral-genetic tracing of the input-output organization of a central noradrenaline circuit.

Published in:

Nature, 2015, v. 524, n. 7563, p. 88, doi. 10.1038/nature14600

By:

Schwarz, Lindsay A.;
Miyamichi, Kazunari;
Gao, Xiaojing J.;
Beier, Kevin T.;
Weissbourd, Brandon;
DeLoach, Katherine E.;
Ren, Jing;
Ibanes, Sandy;
Malenka, Robert C.;
Kremer, Eric J.;
Luo, Liqun

Publication type:

Article

DIVERSITY OF RIBONUCLEIC ACID (RNA) VIRUS ENDOGENOUS VIRAL ELEMENTS (EVEs) IN INSECT GENETIC MATERIAL.

Published in:

Pakistan Journal of Biotechnology, 2022, v. 19, n. 1, p. 1, doi. 10.34016/pjbt.2022.19.1.8

By:

Saqib, Muhammad;
Bibi, Najma;
Bibi, Sawaira

Publication type:

Article

Temperature, Viral Genetics, and the Transmission of West Nile Virus by Culex pipiens Mosquitoes.

Published in:

PLoS Pathogens, 2008, v. 4, n. 6, p. 1, doi. 10.1371/journal.ppat.1000092

By:

Kilpatrick, A. Marm;
Meola, Mark A.;
Moudy, Robin M.;
Kramer, Laura D.

Publication type:

Article

Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort.

Published in:

Journal of Infectious Diseases, 2023, v. 227, n. 10, p. 1194, doi. 10.1093/infdis/jiac442

By:

Lawless, Dylan;
McKennan, Christopher G;
Das, Suman R;
Junier, Thomas;
Xu, Zhi Ming;
Anderson, Larry J;
Gebretsadik, Tebeb;
Shilts, Meghan H;
Larkin, Emma;
Rosas-Salazar, Christian;
Chappell, James D;
Fellay, Jacques;
Hartert, Tina V

Publication type:

Article

Viral Genetic Linkage Analysis in the Presence of Missing Data.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135469

By:

Liu, Shelley H.;
Erion, Gabriel;
Novitsky, Vladimir;
Gruttola, Victor De

Publication type:

Article

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.

Published in:

2017

By:

Blanquart, François;
Wymant, Chris;
Cornelissen, Marion;
Gall, Astrid;
Bakker, Margreet;
Bezemer, Daniela;
Hall, Matthew;
Hillebregt, Mariska;
Ong, Swee Hoe;
Albert, Jan;
Bannert, Norbert;
Fellay, Jacques;
Fransen, Katrien;
Gourlay, Annabelle J.;
Grabowski, M. Kate;
Gunsenheimer-Bartmeyer, Barbara;
Günthard, Huldrych F.;
Kivelä, Pia;
Kouyos, Roger;
Laeyendecker, Oliver

Publication type:

Correction Notice

Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding.

Published in:

Nature Biotechnology, 2011, v. 29, n. 10, p. 928, doi. 10.1038/nbt.1977

By:

Lu, Rong;
Neff, Norma F;
Quake, Stephen R;
Weissman, Irving L

Publication type:

Article

Combining Viral Genetics and Statistical Modeling to Improve HIV-1 Time-of-Infection Estimation towards Enhanced Vaccine Efficacy Assessment.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 7, p. 607, doi. 10.3390/v11070607

By:

Rossenkhan, Raabya;
Rolland, Morgane;
Labuschagne, Jan P.L.;
Ferreira, Roux-Cil;
Magaret, Craig A.;
Carpp, Lindsay N.;
Matsen IV, Frederick A.;
Huang, Yunda;
Rudnicki, Erika E.;
Zhang, Yuanyuan;
Ndabambi, Nonkululeko;
Logan, Murray;
Holzman, Ted;
Abrahams, Melissa-Rose;
Anthony, Colin;
Tovanabutra, Sodsai;
Warth, Christopher;
Botha, Gordon;
Matten, David;
Nitayaphan, Sorachai

Publication type:

Article

Review of Climate, Landscape, and Viral Genetics as Drivers of the Japanese Encephalitis Virus Ecology.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 9, p. 1, doi. 10.1371/journal.pntd.0002208

By:

Le Flohic, Guillaume;
Porphyre, Vincent;
Barbazan, Philippe;
Gonzalez, Jean-Paul

Publication type:

Article

Review of Climate, Landscape, and Viral Genetics as Drivers of the Japanese Encephalitis Virus Ecology.

Published in:

PLoS Neglected Tropical Diseases, 2013, v. 7, n. 9, p. 1, doi. 10.1371/journal.pntd.0002208

By:

Le Flohic, Guillaume;
Porphyre, Vincent;
Barbazan, Philippe;
Gonzalez, Jean-Paul

Publication type:

Article

HIV-1 progression links with viral genetic variability and subtype, and patient's HLA type: analysis of a Nairobi-Kenyan cohort.

Published in:

Medical Microbiology & Immunology, 2014, v. 203, n. 1, p. 57, doi. 10.1007/s00430-013-0314-1

By:

Abidi, Syed;
Shahid, Aniqa;
Lakhani, Laila;
Shah, Reena;
Okinda, Nancy;
Ojwang, Peter;
Abbas, Farhat;
Rowland-Jones, Sarah;
Ali, Syed

Publication type:

Article

Studies on genetic diversity of bovine viral diarrhea viruses in Danish cattle herds.

Published in:

Virus Genes, 2014, v. 48, n. 2, p. 376, doi. 10.1007/s11262-013-1020-1

By:

Nagy, Abdou;
Fahnøe, Ulrik;
Rasmussen, Thomas;
Uttenthal, Åse

Publication type:

Article

Understanding the genetics of viral drug resistance by integrating clinical data and mining of the scientific literature.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-17746-3

By:

Goto, An;
Rodriguez-Esteban, Raul;
Scharf, Sebastian H.;
Morris, Garrett M.

Publication type:

Article

Small Ruminant Lentiviruses: Strain Variation, Viral Tropism, and Host Genetics Influence Pathogenesis.

Published in:

Veterinary Pathology, 2017, v. 54, n. 3, p. 353, doi. 10.1177/0300985817695517

By:

Highland, M. A.

Publication type:

Article

Editorial: Decoding the genetics of viral evolution.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.978485

By:

Ali, Hashim;
Rahman, Sheikh Abdul;
Akhtar, Junaid;
Haque, Syed Asfarul;
Ali, Safdar

Publication type:

Article

Venezuelan Equine Encephalitis in Panama: Fatal Endemic Disease and Genetic Diversity of Etiologic Viral Strains.

Published in:

PLoS Neglected Tropical Diseases, 2009, v. 3, n. 6, p. 1, doi. 10.1371/journal.pntd.0000472

By:

Quiroz, Evelia;
Aguilar, Patricia V.;
Cisneros, Julio;
Tesh, Robert B.;
Weaver, Scott C.

Publication type:

Article

Unifying Viral Genetics and Human Transportation Data to Predict the Global Transmission Dynamics of Human Influenza H3N2.

Published in:

PLoS Pathogens, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.ppat.1003932

By:

Lemey, Philippe;
Rambaut, Andrew;
Bedford, Trevor;
Faria, Nuno;
Bielejec, Filip;
Baele, Guy;
Russell, Colin A.;
Smith, Derek J.;
Pybus, Oliver G.;
Brockmann, Dirk;
Suchard, Marc A.

Publication type:

Article

Viral genetics: Deadly partnerships.

Published in:

Nature, 2003, v. 425, n. 6955, p. 251, doi. 10.1038/425251a

By:

Frank, Steven A.

Publication type:

Article

Viral genetic variation, AIDS, and the multistep nature of carcinogenesis: the feline leukemia virus model.

Published in:

Leukemia (08876924), 1997, v. 11, p. 242

By:

Rohn, J. L.;
Gwynn, S. R.;
Lauring, A. S.;
Linenberger, M. L.;
Overbaugh, J.

Publication type:

Article

Validation of a Harmonized Enzyme-Linked-Lectin-Assay (ELLA-NI) Based Neuraminidase Inhibition Assay Standard Operating Procedure (SOP) for Quantification of N1 Influenza Antibodies and the Use of a Calibrator to Improve the Reproducibility of the ELLA-NI With Reverse Genetics Viral and Recombinant Neuraminidase Antigens: A FLUCOP Collaborative Study

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.909297

By:

Bernard, Marie-Clotilde;
Waldock, Joanna;
Commandeur, Sylvie;
Strauß, Lea;
Trombetta, Claudia Maria;
Marchi, Serena;
Zhou, Fan;
van de Witte, Serge;
van Amsterdam, Peter;
Ho, Sammy;
Hoschler, Katja;
Lugovtsev, Vladimir;
Weir, Jerry P.;
Montomoli, Emanuele;
Cox, Rebecca J.;
Engelhardt, Othmar G.;
Friel, Damien;
Wagner, Ralf;
Ollinger, Thierry;
Germain, Sophie

Publication type:

Article

Editorial: Host Genetics in Viral Pathogenesis and Control.

Published in:

2019

By:

An, Ping;
Guo, Ju-Tao;
Winkler, Cheryl A.

Publication type:

Editorial

Functional Genomics and Immunologic Tools: The Impact of Viral and Host Genetic Variations on the Outcome of Zika Virus Infection.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 8, p. 422, doi. 10.3390/v10080422

By:

Yun, Sang-Im;
Song, Byung-Hak;
Frank, Jordan C.;
Olsen, Aaron L.;
Julander, Justin G.;
Polejaeva, Irina A.;
Davies, Christopher J.;
White, Kenneth L.;
Lee, Young-Min

Publication type:

Article

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005339

By:

Bartha, István;
McLaren, Paul J.;
Brumme, Chanson;
Harrigan, Richard;
Telenti, Amalio;
Fellay, Jacques

Publication type:

Article

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation.

Published in:

GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae065

By:

Fuhrmann, Lara;
Jablonski, Kim Philipp;
Topolsky, Ivan;
Batavia, Aashil A;
Borgsmüller, Nico;
Baykal, Pelin Icer;
Carrara, Matteo;
Chen, Chaoran;
Dondi, Arthur;
Dragan, Monica;
Dreifuss, David;
John, Anika;
Langer, Benjamin;
Okoniewski, Michal;
Plessis, Louis du;
Schmitt, Uwe;
Singer, Franziska;
Stadler, Tanja;
Beerenwinkel, Niko

Publication type:

Article

Immune escaping of the novel genotypes of human respiratory syncytial virus based on gene sequence variation.

Published in:

Frontiers in Immunology, 2023, v. 13, p. 01, doi. 10.3389/fimmu.2022.1084139

By:

Xiaohe Zhou;
Mingli Jiang;
Fengjie Wang;
Yuan Qian;
Qinwei Song;
Yu Sun;
Runan Zhu;
Fang Wang;
Dong Qu;
Ling Cao;
Lijuan Ma;
Yanpeng Xu;
Ri De;
Linqing Zhao

Publication type:

Article

Ecological and Evolutionary Processes Shaping Viral Genetic Diversity.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 3, p. 220, doi. 10.3390/v11030220

By:

Retel, Cas;
Märkle, Hanna;
Becks, Lutz;
Feulner, Philine G. D.

Publication type:

Article

The Importance of Being Non-Defective: A Mini Review Dedicated to the Memory of Jan Svoboda.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 1, p. 80, doi. 10.3390/v11010080

By:

Vogt, Peter K.

Publication type:

Article

Stably Expressed Genes Involved in Basic Cellular Functions.

Published in:

PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0170813

By:

Wang, Kejian;
Vijay, Vikrant;
Fuscoe, James C.

Publication type:

Article

A single phosphoacceptor residue in BGLF3 is essential for transcription of Epstein-Barr virus late genes.

Published in:

PLoS Pathogens, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.ppat.1007980

By:

Li, Jinlin;
Walsh, Ann;
Lam, TuKiet T.;
Delecluse, Henri-Jacques;
El-Guindy, Ayman

Publication type:

Article

Dysregulation of M segment gene expression contributes to influenza A virus host restriction.

Published in:

PLoS Pathogens, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.ppat.1007892

By:

Calderon, Brenda M.;
Danzy, Shamika;
Delima, Gabrielle K.;
Jacobs, Nathan T.;
Ganti, Ketaki;
Hockman, Megan R.;
Conn, Graeme L.;
Lowen, Anice C.;
Steel, John

Publication type:

Article

Serological and viral genetic features of patients with COVID-19 in a selected German patient cohort—correlation with disease characteristics.

Published in:

GeroScience, 2021, v. 43, n. 5, p. 2249, doi. 10.1007/s11357-021-00443-w

By:

Schmidt, Jonas;
Berghaus, Sandro;
Blessing, Frithjof;
Wenzel, Folker;
Herbeck, Holger;
Blessing, Josef;
Schierack, Peter;
Rödiger, Stefan;
Roggenbuck, Dirk

Publication type:

Article

Transcriptome profiling in Rift Valley fever virus infected cells reveals modified transcriptional and alternative splicing programs.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217497

By:

Havranek, Katherine E.;
White, Luke Adam;
Lanchy, Jean-Marc;
Lodmell, J. Stephen

Publication type:

Article

Signature molecules expressed differentially in a liver disease stage-specific manner by HIV-1 and HCV co-infection.

Published in:

PLoS ONE, 2018, p. 1, doi. 10.1371/journal.pone.0202524

By:

Whitmill, Amanda;
Kim, Seongcheol;
Rojas, Vivian;
Gulraiz, Fahad;
Afreen, Kazi;
Jain, Mamta;
Singh, Meharvan;
Park, In-Woo

Publication type:

Article

An Epigenetic Compound Library Screen Identifies BET Inhibitors That Promote HSV-1 and -2 Replication by Bridging P-TEFb to Viral Gene Promoters through BRD4.

Published in:

PLoS Pathogens, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.ppat.1005950

By:

Ren, Ke;
Zhang, Wei;
Chen, Xiaoqing;
Ma, Yingyu;
Dai, Yue;
Fan, Yimei;
Hou, Yayi;
Tan, Ren Xiang;
Li, Erguang

Publication type:

Article

The Telomeric Repeats of Human Herpesvirus 6A (HHV-6A) Are Required for Efficient Virus Integration.

Published in:

PLoS Pathogens, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.ppat.1005666

By:

Wallaschek, Nina;
Sanyal, Anirban;
Pirzer, Fabian;
Gravel, Annie;
Mori, Yasuko;
Flamand, Louis;
Kaufer, Benedikt B.

Publication type:

Article

The Genetic Diversification of a Single Bluetongue Virus Strain Using an In Vitro Model of Alternating-Host Transmission.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 9, p. 1038, doi. 10.3390/v12091038

By:

Kopanke, Jennifer H.;
Lee, Justin S.;
Stenglein, Mark D.;
Mayo, Christie E.

Publication type:

Article

Reverse Genetics of RNA Viruses: ISA-Based Approach to Control Viral Population Diversity without Modifying Virus Phenotype.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 7, p. 666, doi. 10.3390/v11070666

By:

Driouich, Jean-Sélim;
Moureau, Gregory;
de Lamballerie, Xavier;
Nougairède, Antoine

Publication type:

Article

Viral Genomic Variation and the Severity of Genital Herpes Simplex Virus-2 Infection as Quantified by Shedding Rate: A Viral Genome-Wide Association Study.

Published in:

Journal of Infectious Diseases, 2024, v. 230, n. 6, p. 1357, doi. 10.1093/infdis/jiae283

By:

Casto, Amanda M;
Song, Hoseung;
Xie, Hong;
Selke, Stacy;
Roychoudhury, Pavitra;
Wu, Michael C;
Wald, Anna;
Greninger, Alexander L;
Johnston, Christine

Publication type:

Article

Loss and Recovery of Genetic Diversity in Adapting Populations of HIV.

Published in:

PLoS Genetics, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.pgen.1004000

By:

Pennings, Pleuni S.;
Kryazhimskiy, Sergey;
Wakeley, John

Publication type:

Article

Evidence for inter- and intra-genotypic variations in dengue serotype 4 viruses representing predominant and non-predominant genotypes co-circulating in Thailand from 1977 to 2001.

Published in:

Virus Genes, 2010, v. 41, n. 1, p. 5, doi. 10.1007/s11262-010-0473-8

By:

Zhao, Richard;
Chinnawirotpisan, Piyawan;
Klungthong, Chonticha;
Zhang, Chunlin;
Putnak, Robert

Publication type:

Article

Viral myocarditis in combination with genetic cardiomyopathy as a cause of sudden death. An autopsy series.

Published in:

BMC Cardiovascular Disorders, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12872-024-03913-z

By:

Callon, Domitille;
Joanne, Pierre;
Andreoletti, Laurent;
Agbulut, Onnik;
Chevalier, Philippe;
Fornès, Paul

Publication type:

Article

Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 1, p. 1, doi. 10.1371/journal.pcbi.1010756

By:

Gabrielaite, Migle;
Bennedbæk, Marc;
Rasmussen, Malthe Sebro;
Kan, Virginia;
Furrer, Hansjakob;
Flisiak, Robert;
Losso, Marcelo;
Lundgren, Jens D.;
Marvig, Rasmus L.

Publication type:

Article

Evaluation of host genetic and viral factors as surrogate markers for HTLV-1-associated myelopathy/tropical spastic paraparesis in Peruvian HTLV-1-infected patients.

Published in:

Journal of Medical Virology, 2010, v. 82, n. 3, p. 460, doi. 10.1002/jmv.21675

By:

Talledo, Michael;
López, Giovanni;
Huyghe, Jeroen R.;
Verdonck, Kristien;
Adaui, Vanessa;
González, Elsa;
Best, Iván;
Clark, Daniel;
Vanham, Guido;
Gotuzzo, Eduardo;
Van Camp, Guy;
Van Laer, Lut

Publication type:

Article

Genetic susceptibility association between viral infection and colorectal cancer risk: a two-sample Mendelian randomization analysis.

Published in:

Infectious Agents & Cancer, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s13027-024-00602-6

By:

Li, Gen;
Wang, Siyu;
Ma, Jianli;
Liu, Shanshan

Publication type:

Article

Intrahost cytomegalovirus population genetics following antibody pretreatment in a monkey model of congenital transmission.

Published in:

PLoS Pathogens, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.ppat.1007968

By:

Vera Cruz, Diana;
Nelson, Cody S.;
Tran, Dollnovan;
Barry, Peter A.;
Kaur, Amitinder;
Koelle, Katia;
Permar, Sallie R.

Publication type:

Article