Works matching Shotgun cloning

Results: 55

Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning.

Published in:

Virology Journal, 2011, v. 8, n. 1, p. 287, doi. 10.1186/1743-422X-8-287

By:

Steward, Grieg F.;
Preston, Christina M.

Publication type:

Article

Shotgun Cloning and Heterologous Expression of the Patellamide Gene Cluster as a Strategy to Achieving Sustained Metabolite ProductionThis work was presented at the Society for Industrial Microbiology’s GMBIM/BMP conference held during November 14-18, 2004 at the Hilton San Diego Resort, San Diego, CA.

Published in:

ChemBioChem, 2005, v. 6, n. 10, p. 1760, doi. 10.1002/cbic.200500210

By:

Paul F. Long;
Walter C. Dunlap;
Christopher N. Battershill;
Marcel Jaspars

Publication type:

Article

A screening method for β-glucan hydrolase employing Trypan Blue-coupled β-glucan agar plate and β-glucan zymography.

Published in:

Biotechnology Letters, 2012, v. 34, n. 6, p. 1073, doi. 10.1007/s10529-012-0873-z

By:

Park, Chang-Su;
Yang, Hee-Jong;
Kim, Dong-Ho;
Kang, Dae-Ook;
Kim, Min-Soo;
Choi, Nack-Shick

Publication type:

Article

Isolation of a Mutant Auxotrophic for L-Alanine and Identification of Three Major Aminotransferases That Synthesize L-Alanine in Escherichia coli.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 5, p. 930, doi. 10.1271/bbb.100905

By:

Yonayama, Hiroshi;
Hori, Hatsuhiro;
Sang-Jo Lim;
Murata, Tatsuya;
Ando, Tasuke;
Isoagal, Emiko;
Katsumata, Ryoichi

Publication type:

Article

Cloning, Sequencing, and Expression of Selenoprotein Transcripts in the Turkey (Meleagris gallopavo).

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0129801

By:

Sunde, Roger A.;
Sunde, Gavin R.;
Sunde, Colin M.;
Sunde, Milton L.;
Evenson, Jacqueline K.

Publication type:

Article

Discovery and partial characterization of a non- LTR retrotransposon that may be associated with abdominal segment deformity disease (ASDD) in the whiteleg shrimp Penaeus (Litopenaeus) vannamei.

Published in:

BMC Veterinary Research, 2013, v. 9, n. 1, p. 1, doi. 10.1186/1746-6148-9-189

By:

Sakaew, Waraporn;
Pratoomthai, Benjamart;
Pongtippatee, Pattira;
Flegel, Timothy W.;
Withyachumnarnkul, Boonsirm

Publication type:

Article

Genotypic Microbial Community Profiling: A Critical Technical Review.

Published in:

Microbial Ecology, 2007, v. 54, n. 2, p. 276, doi. 10.1007/s00248-006-9199-5

By:

Nocker, Andreas;
Burr, Mark;
Camper, Anne K.

Publication type:

Article

Characterization of developmental colony formation in Corynebacterium glutamicum.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 81, n. 1, p. 127, doi. 10.1007/s00253-008-1622-z

By:

Takano, Hideaki;
Shimizu, Akiko;
Shibosawa, Rina;
Sasaki, Rie;
Iwagaki, Shino;
Minagawa, Osamu;
Yamanaka, Kazuki;
Miwa, Kiyoshi;
Beppu, Teruhiko;
Ueda, Kenji

Publication type:

Article

Molecular characterization and bioactivity evaluation of two novel bombinin peptides from the skin secretion of Oriental fire-bellied toad, Bombina orientalis.

Published in:

Amino Acids, 2018, v. 50, n. 2, p. 241, doi. 10.1007/s00726-017-2509-z

By:

Peng, Xin;
Zhou, Chang;
Hou, Xuan;
Liu, Yao;
Wang, Zhengming;
Peng, Xiaolin;
Zhang, Zhe;
Wang, Ran;
Kong, Dexin

Publication type:

Article

Genetic classification of two Vibrio species isolated from Florida Gulf Coast using multi-locus sequence analysis.

Published in:

Fine Focus, 2020, v. 6, n. 1, p. 34, doi. 10.33043/ff.6.1.34-53

By:

Warrick, Eric C.;
Thomas, Matthew J.;
Barlow, Travis;
Dean, Alexis;
Ramo, Ambar;
Slivonik, Brian;
Gasper, Brittany J.

Publication type:

Article

A DHA14 drug efflux gene from Xanthomonas albilineans confers high-level albicidin antibiotic resistance in Escherichia coli.

Published in:

Journal of Applied Microbiology, 2006, v. 101, n. 1, p. 151, doi. 10.1111/j.1365-2672.2006.02899.x

By:

Bostock, J. M.;
Huang, G.;
Hashimi, S. M.;
Zhang, L.;
Birch, R. G.

Publication type:

Article

Sequence, assembly and analysis of pX01 and pX02.

Published in:

Journal of Applied Microbiology, 1999, v. 87, n. 2, p. 261, doi. 10.1046/j.1365-2672.1999.00883.x

By:

Okinaka, R.;
Cloud, K.;
Hampton, O.;
Hoffmaster, A.;
Hill, K.;
Keim, P.;
Koehler, T.;
Lamke, G.;
Kumano, S.;
Manter, D.;
Martinez, Y.;
Ricke, D.;
Svensson, R.;
Jackson, P.

Publication type:

Article

Identification of Miscellaneous Peptides from the Skin Secretion of the European Edible Frog, Pelophylax kl. Esculentus.

Published in:

Protein Journal, 2016, v. 35, n. 4, p. 291, doi. 10.1007/s10930-016-9672-z

By:

Chen, Xiaole;
Wang, He;
Wang, Lei;
Zhou, Mei;
Chen, Tianbao;
Shaw, Chris

Publication type:

Article

A BAC-based physical map of the Nile tilapia genome.

Published in:

BMC Genomics, 2005, v. 6, p. 89, doi. 10.1186/1471-2164-6-89

By:

Katagiri, Takayuki;
Kidd, Celeste;
Tomasino, Elizabeth;
Davis, Jesse T;
Wishon, Cassandra;
Stern, Justin E;
Carleton, Karen L;
Howe, Aimee E;
Kocher, Thomas D

Publication type:

Article

A new high-alkaline alginate lyase from a deep-sea bacterium Agarivorans sp.

Published in:

Extremophiles, 2009, v. 13, n. 1, p. 121, doi. 10.1007/s00792-008-0201-7

By:

Kobayashi, Tohru;
Uchimura, Kohsuke;
Miyazaki, Masayuki;
Nogi, Yuichi;
Horikoshi, Koki

Publication type:

Article

Heterogeneous resistance to colistin in Enterobacter cloacae complex due to a new small transmembrane protein.

Published in:

2019

By:

Huang, Liang;
Feng, Yu;
Zong, Zhiyong

Publication type:

journal article

Genetic and biochemical characterization of HMB-1, a novel subclass B1 metallo-β-lactamase found in a Pseudomonas aeruginosa clinical isolate.

Published in:

2017

By:

Pfennigwerth, Niels;
Lange, Felix;
Campos, Cristina Belmar;
Hentschke, Moritz;
Gatermann, Sören G.;
Kaase, Martin;
Belmar Campos, Cristina

Publication type:

journal article

Characterization of an extended-spectrum class A β-lactamase from a novel enterobacterial species taxonomically related to Rahnella spp./Ewingella spp.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2013, v. 68, n. 8, p. 1733, doi. 10.1093/jac/dkt122

By:

Lartigue, Marie-Frédérique;
Nordmann, Patrice;
Edelstein, Mikhail V.;
Cuzon, Gaëlle;
Brisse, Sylvain;
Poirel, Laurent

Publication type:

Article

Diversity of naturally occurring Ambler class B metallo-β-lactamases in Erythrobacter spp.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2012, v. 67, n. 11, p. 2661, doi. 10.1093/jac/dks289

By:

Girlich, Delphine;
Poirel, Laurent;
Nordmann, Patrice

Publication type:

Article

Molecular characterization of blaNDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2011, v. 66, n. 9, p. 1998, doi. 10.1093/jac/dkr256

By:

Pfeifer, Yvonne;
Wilharm, Gottfried;
Zander, Esther;
Wichelhaus, Thomas A.;
Göttig, Stefan;
Hunfeld, Klaus-Peter;
Seifert, Harald;
Witte, Wolfgang;
Higgins, Paul G.

Publication type:

Article

Modification and Synergistic Studies of a Novel Frog Antimicrobial Peptide against Pseudomonas aeruginosa Biofilms.

Published in:

Antibiotics (2079-6382), 2024, v. 13, n. 7, p. 574, doi. 10.3390/antibiotics13070574

By:

Liu, Xinze;
Shi, Daning;
Cheng, Shiya;
Chen, Xiaoling;
Ma, Chengbang;
Jiang, Yangyang;
Wang, Tao;
Chen, Tianbao;
Shaw, Chris;
Wang, Lei;
Zhou, Mei

Publication type:

Article

Exploration of the Structure–Function Relationships of a Novel Frog Skin Secretion-Derived Bioactive Peptide, t-DPH1, through Use of Rational Design, Cationicity Enhancement and In Vitro Studies.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 12, p. 1529, doi. 10.3390/antibiotics10121529

By:

Qin, Haixin;
Fang, Hantian;
Chen, Xiaoling;
Wang, Lei;
Ma, Chengbang;
Xi, Xinping;
Chen, Tianbao;
Shaw, Chris;
Zhou, Mei

Publication type:

Article

Identification and Rational Design of a Novel Antibacterial Peptide Dermaseptin-AC from the Skin Secretion of the Red-Eyed Tree Frog Agalychnis callidryas.

Published in:

Antibiotics (2079-6382), 2020, v. 9, n. 5, p. 243, doi. 10.3390/antibiotics9050243

By:

Gong, Zijian;
Pei, Xinjie;
Ren, Shen;
Chen, Xiaoling;
Wang, Lei;
Ma, Chengbang;
Xi, Xinping;
Chen, Tianbao;
Shaw, Chris;
Zhou, Mei

Publication type:

Article

Evaluating the Bioactivity of a Novel Broad-Spectrum Antimicrobial Peptide Brevinin-1GHa from the Frog Skin Secretion of Hylarana guentheri and Its Analogues.

Published in:

Toxins, 2018, v. 10, n. 10, p. 413, doi. 10.3390/toxins10100413

By:

Cheng, Peng;
Bian, Huimin;
Chen, Qi;
Ma, Chengbang;
Xi, Xinping;
Wang, Lei;
Zhou, Mei;
Chen, Tianbao

Publication type:

Article

Molecular Characterization of Three Novel Phospholipase A<sub>2</sub> Proteins from the Venom of Atheris chlorechis, Atheris nitschei and Atheris squamigera.

Published in:

Toxins, 2016, v. 8, n. 6, p. 168, doi. 10.3390/toxins8060168

By:

He Wang;
Xiaole Chen;
Mei Zhou;
Lei Wang;
Tianbao Chen;
Chris Shaw

Publication type:

Article

Discovery and Characterization of Human Exonic Transcriptional Regulatory Elements.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0046098

By:

Khan, Arshad H.;
Lin, Andy;
Smith, Desmond J.;
Provero, Paolo

Publication type:

Article

Gene cloning and biochemical characterization of 4- N-trimethylaminobutyraldehyde dehydrogenase II from Pseudomonas sp. 13CM.

Published in:

World Journal of Microbiology & Biotechnology, 2013, v. 29, n. 4, p. 683, doi. 10.1007/s11274-012-1224-x

By:

Bari, Md.;
Hassan, Maizom;
Akai, Naoki;
Arima, Jiro;
Mori, Nobuhiro

Publication type:

Article

Characterisation of a novel peptide, Brevinin‐1H, from the skin secretion of Amolops hainanensis and rational design of several analogues.

Published in:

Chemical Biology & Drug Design, 2021, v. 97, n. 2, p. 273, doi. 10.1111/cbdd.13779

By:

Pei, Xinjie;
Gong, Zijian;
Wu, Qing;
Chen, Xiaoling;
Wang, Lei;
Ma, Chengbang;
Xi, Xinping;
Chen, Tianbao;
Shaw, Chris;
Zhou, Mei

Publication type:

Article

pLR-HL: A Novel Amphibian Bowman-Birk-type Trypsin Inhibitor from the Skin Secretion of the Broad-folded Frog, Hylarana latouchii.

Published in:

Chemical Biology & Drug Design, 2016, v. 87, n. 1, p. 91, doi. 10.1111/cbdd.12626

By:

Lin, Yan;
Hang, Haiying;
Chen, Tianbao;
Zhou, Mei;
Wang, Lei;
Shaw, Chris

Publication type:

Article

How to find small non-coding RNAs in bacteria.

Published in:

Biological Chemistry, 2005, v. 386, n. 12, p. 1219, doi. 10.1515/BC.2005.140

By:

Vogel, Jörg;
Sharma, Cynthia Mira

Publication type:

Article

Quantifying the accessibility of the metagenome by random expression cloning techniques.

Published in:

Environmental Microbiology, 2004, v. 6, n. 9, p. 879, doi. 10.1111/j.1462-2920.2004.00640.x

By:

Gabor, Esther M.;
Alkema, Wynand B. L.;
Janssen, Dick B.

Publication type:

Article

Unique features of the apoptotic endonuclease DFF40/CAD relative to micrococcal nuclease as a structural probe for chromatin.

Published in:

Biochemistry & Cell Biology, 2006, v. 84, n. 4, p. 405, doi. 10.1139/O06-063

By:

Widlak, Piotr;
Garrard, William T.

Publication type:

Article

Synthesis of an arrayed sgRNA library targeting the human genome.

Published in:

Scientific Reports, 2015, p. 1, doi. 10.1038/srep14987

By:

Schmidt, Tobias;
Schmid-Burgk, Jonathan L.;
Veit Hornung

Publication type:

Article

Vascular Gene Expression in Atherosclerotic Plaque-Prone Regions Analyzed by Representational Difference Analysis.

Published in:

Pathobiology, 2004, v. 71, n. 2, p. 107, doi. 10.1159/000074426

By:

Boräng, Stina;
Andersson, Tove;
Thelin, Anders;
Odeberg, Jacob;
Lundeberg, Joakim

Publication type:

Article

Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes.

Published in:

Nature Biotechnology, 2005, v. 23, n. 1, p. 88, doi. 10.1038/nbt1048

By:

Uchiyama, Taku;
Abe, Takashi;
Ikemura, Toshimichi;
Watanabe, Kazuya

Publication type:

Article

A putative Type IIS restriction endonuclease GeoICI from Geobacillus sp. - A robust, thermostable alternative to mezophilic prototype BbvI.

Published in:

Journal of Biosciences, 2016, v. 41, n. 1, p. 27, doi. 10.1007/s12038-016-9595-z

By:

Zebrowska, Joanna;
Zołnierkiewicz, Olga;
Zylicz-Stachula, Agnieszka;
Jezewska-Frackowiak, Joanna;
Skowron, Piotr;
Skowron, Marta

Publication type:

Article

Expression and characterization of a novel cold-adapted lipase from psychrotolerant bacteria Psychrobacter sp. S1B.

Published in:

Malaysian Journal of Microbiology, 2020, v. 16, n. 2, p. 79, doi. 10.21161/mjm.180177

By:

Satya, Andreas Adhi;
Hermosaningtyas, Anastasia Aliesa;
Puspitasari, Esti;
Suwanto, Antonius

Publication type:

Article

Pharmacological Effects of a Novel Bradykinin-Related Peptide (RR-18) from the Skin Secretion of the Hejiang Frog (Ordorrana hejiangensis) on Smooth Muscle.

Published in:

Biomedicines, 2020, v. 8, n. 7, p. 225, doi. 10.3390/biomedicines8070225

By:

Zhou, Xiaowei;
Xu, Jie;
Zhong, Ruimin;
Ma, Chengbang;
Zhou, Mei;
Cao, Zhijian;
Xi, Xinping;
Shaw, Chris;
Chen, Tianbao;
Wang, Lei;
Kwok, Hang Fai

Publication type:

Article

Passiflora plastome sequencing reveals widespread genomic rearrangements.

Published in:

Journal of Systematics & Evolution, 2019, v. 57, n. 1, p. 1, doi. 10.1111/jse.12425

By:

Rabah, Samar O.;
Alharby, Hesham F.;
Sabir, Mernan J.;
Shrestha, Bikash;
Gilbert, Lawrence E.;
Ruhlman, Tracey A.;
Jansen, Robert K.;
Hajrah, Nahid H.;
Alhebshi, Alawiah M.;
Sabir, Jamal S.M.;
Sabir, Mumdooh J.

Publication type:

Article

A Novel Antimicrobial Peptide, Dermaseptin-SS1, with Anti-Proliferative Activity, Isolated from the Skin Secretion of Phyllomedusa tarsius.

Published in:

Molecules, 2023, v. 28, n. 18, p. 6558, doi. 10.3390/molecules28186558

By:

Ma, Xiaonan;
Chen, Yuping;
Shu, Anmei;
Jiang, Yangyang;
Chen, Xiaoling;
Ma, Chengbang;
Zhou, Mei;
Wang, Tao;
Chen, Tianbao;
Shaw, Chris;
Wang, Lei

Publication type:

Article

Evaluating the Bioactivity of a Novel Antimicrobial and Anticancer Peptide, Dermaseptin-PS4(Der-PS4), from the Skin Secretion of Phyllomedusa sauvagii.

Published in:

Molecules, 2019, v. 24, n. 16, p. 2974, doi. 10.3390/molecules24162974

By:

Chen, Dong;
Zhou, Xiaowei;
Chen, Xi;
Huang, Linyuan;
Xi, Xinping;
Ma, Chengbang;
Zhou, Mei;
Wang, Lei;
Chen, Tianbao

Publication type:

Article

Integron-associated resistance genes among multidrug-resistant Pseudomonas aeruginosa isolated from clinical specimens.

Published in:

Turkish Journal of Medical Sciences, 2012, v. 42, n. 1, p. 149, doi. 10.3906/sag-1009-1095

By:

Budak, Fatma;
Kasap, Murat;
Kolayli, Fetiye;
Karadenızlı, Aynur;
Vahaboğlu, Mustafa Haluk

Publication type:

Article

Multiple novel promoters from the early region in the Streptomyces temperate phage φC31 are activated during lytic development.

Published in:

Molecular Microbiology, 1993, v. 9, n. 6, p. 1267, doi. 10.1111/j.1365-2958.1993.tb01256.x

By:

Ingham, C. J.;
Crombie, H. J.;
Bruton, C. J.;
Chater, K. F.;
Hartley, N. M.;
Murphy, G. J. P.;
Smith, M. C. M.

Publication type:

Article

ANÁLISE DA COMUNIDADE MICROBIOLÓGICA E A GERAÇÃO DE ENERGIA POR CÉLULAS DE ENERGIA MICROBIOLÓGICAS COM DIFERENTES TIPOS DE ÂNODOS.

Published in:

HOLOS, 2020, v. 2, p. 1, doi. 10.15628/holos.2020.5645

By:

LAMAS-SAMANAMUD, G. R.;
HOFFER, M.;
JIANG, T.;
LOURES, C. C. A.

Publication type:

Article

A Structural and Functional Analogue of a Bowman Birk-type Protease Inhibitor from Odorrana Schmackeri.

Published in:

Bioscience Reports, 2017, v. 37, n. 2, p. 1, doi. 10.1042/BSR20160593

By:

Yuxin Wu;
Qilin Long;
Ying Xu;
Shaodong Guo;
Tianbao Chen;
Lei Wang;
Mei Zhou;
Yingqi Zhang;
Shaw, Chris;
Walker, Brian

Publication type:

Article

Nigrocin-2 peptides from Chinese Odorrana frogs – integration of UPLC/MS/MS with molecular cloning in amphibian skin peptidome analysis.

Published in:

FEBS Journal, 2010, v. 277, n. 6, p. 1519, doi. 10.1111/j.1742-4658.2010.07580.x

By:

Lei Wang;
Evaristo, Geisa;
Mei Zhou;
Pinkse, Martijn;
Min Wang;
Ying Xu;
Xiaofeng Jiang;
Tianbao Chen;
Pingfan Rao;
Verhaert, Peter;
Shaw, Chris

Publication type:

Article

Expression and purification of the 5′-nucleotidase YitU from Bacillus species: its enzymatic properties and possible applications in biotechnology.

Published in:

Applied Microbiology & Biotechnology, 2020, v. 104, n. 7, p. 2957, doi. 10.1007/s00253-020-10428-y

By:

Yusupova, Yuliya R.;
Skripnikova, Victoria S.;
Kivero, Alexandr D.;
Zakataeva, Natalia P.

Publication type:

Article

A plasmid-based genomic screening system for transcriptional regulators of non-adjacent xenobiotic catabolism genes.

Published in:

Applied Microbiology & Biotechnology, 2020, v. 104, n. 3, p. 1163, doi. 10.1007/s00253-019-10268-5

By:

Cheng, Minggen;
Xing, Ziyu;
Lu, Luyao;
Chen, Feng;
He, Jian;
Huang, Xing

Publication type:

Article

Nucleotide sequence of the tripartite Fragaria chiloensis cryptic virus and presence of the virus in the Americas.

Published in:

Virus Genes, 2008, v. 36, n. 1, p. 267, doi. 10.1007/s11262-007-0186-9

By:

Ioannis Tzanetakis;
Ruth Price

Publication type:

Article

The complete genome of an individual by massively parallel DNA sequencing.

Published in:

Nature, 2008, v. 452, n. 7189, p. 872, doi. 10.1038/nature06884

By:

Wheeler, David A.;
Srinivasan, Maithreyan;
Egholm, Michael;
Yufeng Shen;
Lei Chen;
McGuire, Amy;
Wen He;
Yi-Ju Chen;
Makhijani, Vinod;
Roth, G. Thomas;
Gomes, Xavier;
Tartaro, Karrie;
Niazi, Faheem;
Turcotte, Cynthia L.;
Irzyk, Gerard P.;
Lupski, James R.;
Chinault, Craig;
Xing-zhi Song;
Yue Liu;
Ye Yuan

Publication type:

Article