Works matching Ribosomal RNA

Results: 5000

DER containing two consecutive GTP-binding domains plays an essential role in chloroplast ribosomal RNA processing and ribosome biogenesis in higher plants.

Published in:

Journal of Experimental Botany, 2014, v. 65, n. 1, p. 117, doi. 10.1093/jxb/ert360

By:

Jeon, Young;
Ahn, Chang Sook;
Jung, Hyun Ju;
Kang, Hunseung;
Park, Guen Tae;
Choi, Yeonhee;
Hwang, Jihwan;
Pai, Hyun-Sook

Publication type:

Article

Incomplete removal of ribosomal RNA can affect chromatin RNA-seq data analysis.

Published in:

Transcription (2154-1264), 2020, v. 11, n. 5, p. 230, doi. 10.1080/21541264.2020.1794491

By:

Tellier, Michael;
Murphy, Shona

Publication type:

Article

The conservation landscape of the human ribosomal RNA gene repeats.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0207531

By:

Agrawal, Saumya;
Ganley, Austen R. D.

Publication type:

Article

Efficient depletion of ribosomal RNA for RNA sequencing in planarians.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6292-y

By:

Kim, Iana V.;
Ross, Eric J.;
Dietrich, Sascha;
Döring, Kristina;
Sánchez Alvarado, Alejandro;
Kuhn, Claus-D.

Publication type:

Article

The Use of Ribosomal RNA as a Microbial Source Tracking Target Highlights the Assay Host-Specificity Requirement in Water Quality Assessments.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.673306

By:

Rytkönen, Annastiina;
Tiwari, Ananda;
Hokajärvi, Anna-Maria;
Uusheimo, Sari;
Vepsäläinen, Asko;
Tulonen, Tiina;
Pitkänen, Tarja

Publication type:

Article

Utilization of an In Silico 16S Ribosomal RNA Gene-Based Restriction Enzyme Approach for Identification of Lactic Acid Bacteria.

Published in:

Indian Journal of Pharmaceutical Sciences, 2022, v. 84, p. 49

By:

AL-HINDI, R. R.;
BAHIELDIN, A.;
EDRIS, S.;
ALGOTHMI, KHLOUD MUBARAK;
AL SALAMI, SAJA AWAD;
ALHARBI, MONA GHONAIM;
TEKLEMARIAM, A. D.;
KARAMITROS, T.;
ABUJAMEL, T.;
HARAKEH, S.

Publication type:

Article

Pre-Ribosomal RNA Processing in Human Cells: From Mechanisms to Congenital Diseases.

Published in:

Biomolecules (2218-273X), 2018, v. 8, n. 4, p. 123, doi. 10.3390/biom8040123

By:

Aubert, Maxime;
O'Donohue, Marie-Françoise;
Lebaron, Simon;
Gleizes, Pierre-Emmanuel

Publication type:

Article

Insecticidal activity of three 10-12 nucleotides long antisense sequences from 5.8S ribosomal RNA gene of gypsy moth Lymantria dispar L. against its larvae.

Published in:

Journal of Plant Protection Research, 2019, v. 59, n. 4, p. 561, doi. 10.24425/jppr.2019.131271

By:

Oberemok, Volodymyr V.;
Laikova, Kateryna V.;
Useinov, Refat Z.;
Gal'chinsky, Nikita V.;
Novikov, Ilya A.;
Yurchenko, Kseniya A.;
Volkov, Mikhail E.;
Gorlov, Mikhail V.;
Brailko, Valentina A.;
Plugatar, Yuri V.

Publication type:

Article

Structural Aspects of Ribosomal RNA Recognition by Ribosomal Proteins.

Published in:

Biochemistry (00062979), 2018, v. 83, p. S111, doi. 10.1134/S0006297918140109

By:

Nikulin, A. D.

Publication type:

Article

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04316-z

By:

Schäffer, Alejandro A.;
McVeigh, Richard;
Robbertse, Barbara;
Schoch, Conrad L.;
Johnston, Anjanette;
Underwood, Beverly A.;
Karsch-Mizrachi, Ilene;
Nawrocki, Eric P.

Publication type:

Article

Effects of In Utero EtOH Exposure on 18S Ribosomal RNA Processing: Contribution to Fetal Alcohol Spectrum Disorder.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 13714, doi. 10.3390/ijms241813714

By:

Darbinian, Nune;
Gallia, Gary L.;
Darbinyan, Armine;
Vadachkoria, Ekaterina;
Merabova, Nana;
Moore, Amos;
Goetzl, Laura;
Amini, Shohreh;
Selzer, Michael E.

Publication type:

Article

Electrochemical Determination of 16s Ribosomal RNA of Mycobacterium Tuberculosis Using Magnetite on Silica with DNA-Functionalized Gold Nanoparticles.

Published in:

Analytical Letters, 2016, v. 49, n. 9, p. 1379, doi. 10.1080/00032719.2015.1101601

By:

Sheng, Shangchun;
Liu, Lingzhi;
Zhao, Zhaohui;
Cai, Miao;
Jiang, Xiong;
Kang, Yi;
Dai, Qiong;
Lu, Xinmin;
Xie, Guoming

Publication type:

Article

A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes.

Published in:

G3: Genes | Genomes | Genetics, 2018, v. 8, n. 1, p. 303, doi. 10.1534/g3.117.300225

By:

Mars, Jean-Clement;
Sabourin-Felix, Marianne;
Tremblay, Michel G.;
Moss, Tom

Publication type:

Article

Synthesis of the ribosomal RNA precursor in human cells: mechanisms, factors and regulation.

Published in:

Biological Chemistry, 2023, v. 404, n. 11/12, p. 1003, doi. 10.1515/hsz-2023-0214

By:

Daiß, Julia L.;
Griesenbeck, Joachim;
Tschochner, Herbert;
Engel, Christoph

Publication type:

Article

Mitochondrial markers (cytochrome c oxidase subunit I and 16S ribosomal RNA) as supporting biomarkers for wild bird identification.

Published in:

Veterinary World, 2025, v. 18, n. 5, p. 1389, doi. 10.14202/vetworld.2025.1389-1399

By:

Marín-Villa, Julián;
López-Herrera, Albeiro;
Gómez-Ruiz, Daisy A.;
Restrepo-Rodas, Diana C.;
Sánchez-Rodríguez, Geraldine;
Úsuga-Monroy, Cristina

Publication type:

Article

A systematic review of the microbiome of Hyalomma Koch, 1844 ticks using next-generation sequencing of the 16S ribosomal RNA gene.

Published in:

Veterinary World, 2025, v. 18, n. 5, p. 1090, doi. 10.14202/vetworld.2025.1090-1100

By:

Al Masri, Mohamad Taha;
Al-Deeb, Mohammad Ali

Publication type:

Article

Optimization of Mapping Tools and Investigation of Ribosomal RNA Influence for Data-Driven Gene Expression Analysis in Complex Microbiomes.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 995, doi. 10.3390/microorganisms13050995

By:

Mameda, Ryo;
Bono, Hidemasa

Publication type:

Article

Therapeutic intervention based on gene sequencing analysis of microbial 16S ribosomal RNA of the intrauterine microbiome improves pregnancy outcomes in IVF patients: a prospective cohort study.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 1, p. 125, doi. 10.1007/s10815-022-02688-6

By:

Iwami, Nanako;
Kawamata, Miho;
Ozawa, Naoko;
Yamamoto, Takahiro;
Watanabe, Eri;
Mizuuchi, Masahito;
Moriwaka, Osamu;
Kamiya, Hirobumi

Publication type:

Article

The SILVA Database Project: An ELIXIR core data resource for high-quality ribosomal RNA sequences.

Published in:

2019

By:

Glöckner, Frank Oliver

Publication type:

Abstract

Intragenomic polymorphism and intergenomic recombination in the ribosomal RNA genes of strains belonging to a yeast species Pichia membranifaciens.

Published in:

Mycology: An International Journal on Fungal Biology, 2016, v. 7, n. 3, p. 102, doi. 10.1080/21501203.2016.1204369

By:

Wu, Zuo-Wei;
Wang, Qi-Ming;
Liu, Xin-Zhan;
Bai, Feng-Yan

Publication type:

Article

DNA Intercalators Inhibit Eukaryotic Ribosomal RNA Synthesis by Impairing the Initiation of Transcription.

Published in:

Genes, 2021, v. 12, n. 9, p. 1412, doi. 10.3390/genes12091412

By:

Andrews, William J.;
Ray, Swagat;
Panova, Tatiana;
Engel, Christoph;
Panov, Konstantin I.

Publication type:

Article

Learning-induced ribosomal RNA is required for memory consolidation in mice—Evidence of differentially ex-pressed rRNA variants in learning and memory.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0203374

By:

Allen, Kim D.;
Regier, Matthew J.;
Hsieh, Changchi;
Tsokas, Panayiotis;
Barnard, Maya;
Phatarpekar, Shwetha;
Wolk, Jason;
Sacktor, Todd C.;
Fenton, André A.;
Hernández, A. Iván

Publication type:

Article

Identification and expression analysis of a microRNA cluster derived from pre-ribosomal RNA in Papaver somniferum L. and Papaver bracteatum L.

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0199673

By:

Davoodi Mastakani, Farshad;
Pagheh, Gabriel;
Rashidi Monfared, Sajad;
Shams-Bakhsh, Masoud

Publication type:

Article

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195723

By:

An, Weidong;
Du, Yifei;
Ye, Keqiong

Publication type:

Article

1834. Incremental Diagnostic Value of 16S Ribosomal RNA Gene Polymerase Chain Reaction/Sanger Sequencing in Clinical Practice.

Published in:

Open Forum Infectious Diseases, 2019, v. 6, p. S44, doi. 10.1093/ofid/ofz359.096

By:

Khalil, Sarwat;
Fida, Madiha;
Challener, Douglas W;
Saleh, Omar Abu;
Sohail, Muhammad R;
Yang, Joshua;
Pritt, Bobbi;
Schuetz, Audrey;
Patel, Robin

Publication type:

Article

How Cancer Exploits Ribosomal RNA Biogenesis: A Journey beyond the Boundaries of rRNA Transcription.

Published in:

Cells (2073-4409), 2019, v. 8, n. 9, p. 1098, doi. 10.3390/cells8091098

By:

Gaviraghi, Marco;
Vivori, Claudia;
Tonon, Giovanni

Publication type:

Article

Absence of association between Plasmodium falciparum small sub-unit ribosomal RNA gene mutations and in vitro decreased susceptibility to doxycycline.

Published in:

Malaria Journal, 2015, v. 14, n. 1, p. 1, doi. 10.1186/s12936-015-0878-x

By:

Gaillard, Tiphaine;
Wurtz, Nathalie;
Houzé, Sandrine;
Sriprawat, Kanlaya;
Wangsing, Chirapat;
Hubert, Véronique;
Lebras, Jacques;
Nosten, François;
Briolant, Sébastien;
Pradines, Bruno

Publication type:

Article

Comparative characteristics of the intergenic spacer of the ribosomal RNA gene cluster in mosquitoes of the genus Culex (Diptera: Culicidae).

Published in:

Molecular Biology, 2013, v. 47, n. 3, p. 364, doi. 10.1134/S0026893313030114

By:

Shaikevich, E.;
Zagoskin, M.;
Mukha, D.

Publication type:

Article

Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0185226

By:

Jiang, Yiyang;
Li, Fudong;
Wu, Jihui;
Shi, Yunyu;
Gong, Qingguo

Publication type:

Article

The significance of oral streptococci in patients with pneumonia with risk factors for aspiration: the bacterial floral analysis of 16S ribosomal RNA gene using bronchoalveolar lavage fluid.

Published in:

2016

By:

Kentaro Akata;
Kazuhiro Yatera;
Kei Yamasaki;
Toshinori Kawanami;
Keisuke Naito;
Shingo Noguchi;
Kazumasa Fukuda;
Hiroshi Ishimoto;
Hatsumi Taniguchi;
Hiroshi Mukae;
Akata, Kentaro;
Yatera, Kazuhiro;
Yamasaki, Kei;
Kawanami, Toshinori;
Naito, Keisuke;
Noguchi, Shingo;
Fukuda, Kazumasa;
Ishimoto, Hiroshi;
Taniguchi, Hatsumi;
Mukae, Hiroshi

Publication type:

journal article

Subcellular Compartment‐Specific Amplified Imaging of Metal Ions via Ribosomal RNA‐Regulated DNAzyme Sensors.

Published in:

Angewandte Chemie, 2025, v. 137, n. 4, p. 1, doi. 10.1002/ange.202412387

By:

Yi, Deyu;
Li, Lele;
Li, Mengyuan

Publication type:

Article

Evolutionary Origin and Conserved Structural Building Blocks of Riboswitches and Ribosomal RNAs: Riboswitches as Probable Target Sites for Aminoglycosides Interaction.

Published in:

Advanced Pharmaceutical Bulletin, 2014, v. 4, n. 3, p. 225, doi. 10.5681/apb.2014.033

By:

Aghdam, Elnaz Mehdizadeh;
Barzegar, Abolfazl;
Hejazi, Mohammad Saeid

Publication type:

Article

Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-0763-0

By:

Cherlin, Tess;
Magee, Rogan;
Jing, Yi;
Pliatsika, Venetia;
Loher, Phillipe;
Rigoutsos, Isidore

Publication type:

Article

16S Ribosomal RNA Gene-Based Metagenomics: A Review.

Published in:

Biomedical Research Journal, 2020, v. 7, n. 1, p. 5, doi. 10.4103/BMRJ.BMRJ_4_20

By:

Kamble, Asmita;
Sawant, Shriya;
Singh, Harinder

Publication type:

Article

Mind the Gap: New Full-Length Sequences of Blastocystis Subtypes Generated via Oxford Nanopore Minion Sequencing Allow for Comparisons between Full-Length and Partial Sequences of the Small Subunit of the Ribosomal RNA Gene.

Published in:

Microorganisms, 2021, v. 9, n. 5, p. 997, doi. 10.3390/microorganisms9050997

By:

Maloney, Jenny G.;
Santin, Monica;
Mattiucci, Simonetta

Publication type:

Article

Reconstruction of small subunit ribosomal RNA from high‐throughput sequencing data: A comparative study of metagenomics and total RNA sequencing.

Published in:

Methods in Ecology & Evolution, 2023, v. 14, n. 8, p. 2049, doi. 10.1111/2041-210X.14149

By:

Hempel, Christopher A.;
Carson, Shea E. E.;
Elliott, Tyler A.;
Adamowicz, Sarah J.;
Steinke, Dirk

Publication type:

Article

Ribosomal RNA-depleted RNA sequencing reveals the pathogenesis of refractory Mycoplasma pneumoniae pneumonia in children.

Published in:

Molecular Medicine Reports, 2021, v. 24, n. 5, p. N.PAG, doi. 10.3892/mmr.2021.12401

By:

Huang, Feng;
Fan, Huifeng;
Yang, Diyuan;
Zhang, Junsong;
Shi, Tingting;
Zhang, Dongwei;
Lu, Gen

Publication type:

Article

Defective replication initiation results in locus specific chromosome breakage and a ribosomal RNA deficiency in yeast.

Published in:

PLoS Genetics, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pgen.1007041

By:

Sanchez, Joseph C.;
Kwan, Elizabeth X.;
Pohl, Thomas J.;
Amemiya, Haley M.;
Raghuraman, M. K.;
Brewer, Bonita J.

Publication type:

Article

Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 10, p. 1694, doi. 10.1093/gbe/evaa170

By:

Penev, Petar I;
Fakhretaha-Aval, Sara;
Patel, Vaishnavi J;
Cannone, Jamie J;
Gutell, Robin R;
Petrov, Anton S;
Williams, Loren Dean;
Glass, Jennifer B

Publication type:

Article

Overexpression of Ribosomal RNA in the Development of Human Cervical Cancer Is Associated with rDNA Promoter Hypomethylation.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0163340

By:

Zhou, Hong;
Wang, Yapei;
Lv, Qiongying;
Zhang, Juan;
Wang, Qing;
Gao, Fei;
Hou, Haoli;
Zhang, Hao;
Zhang, Wei;
Li, Lijia

Publication type:

Article

Time-Dependent Decay of mRNA and Ribosomal RNA during Platelet Aging and Its Correlation with Translation Activity.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0148064

By:

Angénieux, Catherine;
Maître, Blandine;
Eckly, Anita;
Lanza, François;
Gachet, Christian;
de la Salle, Henri

Publication type:

Article

Complete mitochondrial genomes and nuclear ribosomal RNA operons of two species of Diplostomum (Platyhelminthes: Trematoda): a molecular resource for taxonomy and molecular epidemiology of important fish pathogens.

Published in:

Parasites & Vectors, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13071-015-0949-4

By:

Brabec, Jan;
Kostadinova, Aneta;
Scholz, Tomáš;
Littlewood, D. Timothy J.

Publication type:

Article

Changed life course upon defective replication of ribosomal RNA genes.

Published in:

Genes & Genetic Systems, 2022, v. 97, n. 6, p. 285, doi. 10.1266/ggs.22-00100

By:

Mei Hattori;
Chihiro Horigome;
Aspert, Théo;
Charvin, Gilles;
Takehiko Kobayashi

Publication type:

Article

Defects in the NuA4 acetyltransferase complex increase stability of the ribosomal RNA gene and extend replicative lifespan.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 5, p. 197, doi. 10.1266/ggs.19-00022

By:

Tsuyoshi Wakatsuki;
Mariko Sasaki;
Takehiko Kobayashi

Publication type:

Article

miR‐424‐5p reduces ribosomal RNA and protein synthesis in muscle wasting.

Published in:

Journal of Cachexia, Sarcopenia & Muscle, 2018, v. 9, n. 2, p. 400, doi. 10.1002/jcsm.12266

By:

Connolly, Martin;
Paul, Richard;
Farre‐Garros, Roser;
Natanek, Samantha A.;
Bloch, Susannah;
Lee, Jen;
Lorenzo, Jose P.;
Patel, Harnish;
Cooper, Cyrus;
Sayer, Avan A.;
Wort, Stephen J.;
Griffiths, Mark;
Polkey, Michael I.;
Kemp, Paul R.

Publication type:

Article

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216709

By:

Smith, Andrew M.;
Jain, Miten;
Mulroney, Logan;
Garalde, Daniel R.;
Akeson, Mark

Publication type:

Article

Structure of the Ribosomal RNA Decoding Site Containing a Selenium-Modified Responsive Fluorescent Ribonucleoside Probe.

Published in:

Angewandte Chemie International Edition, 2017, v. 56, n. 10, p. 2640, doi. 10.1002/anie.201611700

By:

Nuthanakanti, Ashok;
Boerneke, Mark A.;
Hermann, Thomas;
Srivatsan, Seergazhi G.

Publication type:

Article

Inhibition of Ribosomal RNA Processing 15 Homolog (RRP15) Suppressed Tumor Growth, Invasion and Epithelial to Mesenchymal Transition (EMT) of Colon Cancer.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 4, p. 3528, doi. 10.3390/ijms24043528

By:

Deng, Zirong;
Xu, Yun;
Cai, Yuchen;
Lin, Weiling;
Zhang, Libei;
Jiang, Aoqing;
Zhou, Yuhang;
Zhao, Rui;
Zhao, Heyan;
Liu, Zhaoguo;
Yan, Tingdong

Publication type:

Article

Nuclear α-Synuclein-Derived Cytotoxic Effect via Altered Ribosomal RNA Processing in Primary Mouse Embryonic Fibroblasts.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2132, doi. 10.3390/ijms24032132

By:

Ho, Dong Hwan;
Kim, Hyejung;
Nam, Daleum;
Heo, Jinju;
Son, Ilhong

Publication type:

Article

Ribosomal RNA Modulates Aggregation of the Podospora Prion Protein HET-s.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 17, p. 6340, doi. 10.3390/ijms21176340

By:

Pang, Yanhong;
Kovachev, Petar;
Sanyal, Suparna

Publication type:

Article