Works matching RNA structure and function

Results: 658

Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac112

By:

Solayman, Md;
Litfin, Thomas;
Singh, Jaswinder;
Paliwal, Kuldip;
Zhou, Yaoqi;
Zhan, Jian

Publication type:

Article

Insights into RNA structure and function from genome-wide studies.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 7, p. 469, doi. 10.1038/nrg3681

By:

Mortimer, Stefanie A.;
Kidwell, Mary Anne;
Doudna, Jennifer A.

Publication type:

Article

RNA editing enzymes: structure, biological functions and applications.

Published in:

Cell & Bioscience, 2024, v. 14, n. 1, p. 1, doi. 10.1186/s13578-024-01216-6

By:

Zhang, Dejiu;
Zhu, Lei;
Gao, Yanyan;
Wang, Yin;
Li, Peifeng

Publication type:

Article

Constraint counting on RNA and ribosomal structures: linking flexibility and function.

Published in:

2011

By:

Fulle, Simone;
Gohlke, Holger

Publication type:

Abstract

The molecular structure and biological functions of RNA methylation, with special emphasis on the roles of RNA methylation in autoimmune diseases.

Published in:

Critical Reviews in Clinical Laboratory Sciences, 2022, v. 59, n. 3, p. 203, doi. 10.1080/10408363.2021.2002256

By:

Zhou, Wanwan;
Wang, Xiao;
Chang, Jun;
Cheng, Chenglong;
Miao, Chenggui

Publication type:

Article

Accelerating calculations of RNA secondary structure partition functions using GPUs.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-29

By:

Stern, Harry A.;
Mathews, David H.

Publication type:

Article

Mutational interference mapping experiment (MIME) for studying RNA structure and function.

Published in:

Nature Methods, 2015, v. 12, n. 9, p. 866, doi. 10.1038/nmeth.3490

By:

Smyth, Redmond P;
Despons, Laurence;
Huili, Gong;
Bernacchi, Serena;
Hijnen, Marcel;
Mak, Johnson;
Jossinet, Fabrice;
Weixi, Li;
Paillart, Jean-Christophe;
von Kleist, Max;
Marquet, Roland

Publication type:

Article

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0464-9

By:

Yang Song;
Lei Hua;
Shapiro, Bruce A.;
Wang, Jason T. L.

Publication type:

Article

Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0464-9

By:

Yang Song;
Lei Hua;
Shapiro, Bruce A.;
Wang, Jason T. L.

Publication type:

Article

An RNA Scoring Function for Tertiary Structure Prediction Based on Multi-Layer Neural Networks.

Published in:

Molecular Biology, 2019, v. 53, n. 1, p. 118, doi. 10.1134/S0026893319010175

By:

Wang, Y. Z.;
Li, J.;
Zhang, S.;
Huang, B.;
Yao, G.;
Zhang, J.

Publication type:

Article

Unified approach to partition functions of RNA secondary structures.

Published in:

Journal of Mathematical Biology, 2014, v. 69, n. 5, p. 1129, doi. 10.1007/s00285-013-0737-8

By:

Bundschuh, Ralf

Publication type:

Article

Long Non-coding RNA Structure and Function: Is There a Link?

Published in:

Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.01201

By:

Zampetaki, Anna;
Albrecht, Andreas;
Steinhofel, Kathleen

Publication type:

Article

Using Chemical Approaches to Understand RNA Structure and Function in Biology.

Published in:

Journal of Nucleic Acids, 2012, p. 1, doi. 10.1155/2012/972575

By:

Stetsenko, Dmitry A.;
van Aerschot, Arthur

Publication type:

Article

A pair-conformation-dependent scoring function for evaluating 3D RNA-protein complex structures.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174662

By:

Li, Haotian;
Huang, Yangyu;
Xiao, Yi

Publication type:

Article

Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking.

Published in:

EMBO Journal, 2007, v. 26, n. 16, p. 3836, doi. 10.1038/sj.emboj.7601812

By:

Xuehua Zhong;
Xiaorong Tao;
Stombaugh, Jesse;
Leontis, Neocles;
Biao Ding

Publication type:

Article

Structure-function analysis of Methanobacterium thermoautotrophicum RNA ligase--engineering a thermostable ATP independent enzyme.

Published in:

BMC Molecular Biology, 2012, v. 13, n. 1, p. 24, doi. 10.1186/1471-2199-13-24

By:

Zhelkovsky, Alexander M.;
McReynolds, Larry A.

Publication type:

Article

Illuminating the silence: understanding the structure and function of small RNAs.

Published in:

Nature Reviews Molecular Cell Biology, 2007, v. 8, n. 1, p. 23, doi. 10.1038/nrm2085

By:

Rana, Tariq M.

Publication type:

Article

Computing the Partition Function for Kinetically Trapped RNA Secondary Structures.

Published in:

PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0016178

By:

Lorenz, William A.;
Clote, Peter

Publication type:

Article

Structure-function analysis of mutant RNA-dependent RNA polymerase complexes with VPg.

Published in:

Biochemistry (00062979), 2009, v. 74, n. 10, p. 1132, doi. 10.1134/S0006297909100095

By:

Chaojiang Gu;
Tao Zeng;
Yong Li;
Zhenghui Xu;
Zhongxi Mo;
Congyi Zheng

Publication type:

Article

How RNA function requires structure.

Published in:

1998

By:

Pan, Tao

Publication type:

Book Review

RNA Binding Motif Protein 15 (RBM15): Structure, Function and Its Research Progress in Tumors.

Published in:

International Journal of General Medicine, 2025, v. 18, p. 3635, doi. 10.2147/IJGM.S519741

By:

Long, Xiangyu;
Hu, Bintao;
Zhu, Shiqing;
Wu, Yue;
Wang, Tao

Publication type:

Article

Rearranging RNA structures at 75°C? toward the molecular mechanism and physiological function of the thermus thermophilus DEAD-box helicase hera.

Published in:

Biopolymers, 2013, v. 99, n. 12, p. 1137, doi. 10.1002/bip.22316

By:

Klostermeier, Dagmar;
A. Woodson, Sarah

Publication type:

Article

RNA: Getting in shape - bacterial mRNA structure functions beyond information transfer.

Published in:

2015

By:

Koch, Linda

Publication type:

journal article

Non-coding RNA: Structure and function for lncRNAs.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 9, p. 598, doi. 10.1038/nrg3561

By:

Flintoft, Louisa

Publication type:

Article

The Unpaved Road of Non-Coding RNA Structure–Function Relationships: Current Knowledge, Available Methodologies, and Future Trends.

Published in:

Non-Coding RNA, 2025, v. 11, n. 2, p. 20, doi. 10.3390/ncrna11020020

By:

Leitão, Ana Lúcia;
Enguita, Francisco J.

Publication type:

Article

Editorial: RNA plasticity: novel structures, shapes, modifications, and functions.

Published in:

Frontiers in Plant Science, 2023, p. 01, doi. 10.3389/fpls.2023.1265867

By:

Kadam, Ulhas S.;
Deshmukh, Rupesh;
Li Tian

Publication type:

Article

Genomic analysis of codon, sequence and structural conservation with selective biochemical-structure mapping reveals highly conserved and dynamic structures in rotavirus RNAs with potential cis-acting functions.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 21, p. 7718, doi. 10.1093/nar/gkq663

By:

Li, Wilson;
Manktelow, Emily;
von Kirchbach, Johann C.;
Gog, Julia R.;
Desselberger, Ulrich;
Lever, Andrew M.

Publication type:

Article

SARA: a server for function annotation of RNA structures.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W260, doi. 10.1093/nar/gkp433

By:

Capriotti, Emidio;
Marti-Renom, Marc A.

Publication type:

Article

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 6, p. 1770, doi. 10.1093/nar/gkm1085

By:

Kierzek, Elzbieta;
Kierzek, Ryszard;
Moss, Walter N.;
Christensen, Shawn M.;
Eickbush, Thomas H.;
Turner, Douglas H.

Publication type:

Article

Structure-function analysis of the RNA helicase maleless.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 3, p. 950, doi. 10.1093/nar/gkm1108

By:

Izzo, Annalisa;
Regnard, Catherine;
Morales, Violette;
Kremmer, Elisabeth;
Becker, Peter B.

Publication type:

Article

Structure–function analysis of the RNA polymerase cleft loops elucidates initial transcription, DNA unwinding and RNA displacement.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 2, p. 676, doi. 10.1093/nar/gkm1086

By:

Naji, Souad;
Bertero, Michela G.;
Spitalny, Patrizia;
Cramer, Patrick;
Thomm, Michael

Publication type:

Article

Structure–function analysis of yeast RNA debranching enzyme (Dbr1), a manganese-dependent phosphodiesterase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 19, p. 6349, doi. 10.1093/nar/gki934

By:

Khalid, M. Fahad;
Damha, Masad J.;
Shuman, Stewart;
Schwer, Beate

Publication type:

Article

Position-dependent function of a B block promoter element implies a specialized chromatin structure on the S.cerevisiae U6 RNA gene, SNR6.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 14, p. 4297, doi. 10.1093/nar/gkh769

By:

Kaiser, Michael W.;
Chi, Jing;
Brow, David A.

Publication type:

Article

RNA molecules with structure dependent functions are uniquely folded.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 16, p. 3574

By:

Le, Shu‐Yun;
Zhang, Kaizhong;
Maizel Jr, Jacob V.

Publication type:

Article

Structure/Function Analysis of an RNA Aptamer for Hepatitis C Virus NS3 Protease.

Published in:

Journal of Biochemistry, 2003, v. 133, n. 3, p. 351, doi. 10.1093/jb/mvg047

By:

Sekiya, Satoru;
Nishikawa, Fumiko;
Fukuda, Kotaro;
Nishikawa, Satoshi

Publication type:

Article

FEBS 4th Meeting Proceedings. Vol. 3. Structure and Function of Transfer RNA and SS RNA.

Published in:

Clinical Chemistry & Laboratory Medicine, 1972, v. 10, n. 1, p. 42

By:

Braun, R.

Publication type:

Article

RNA-splicing endonuclease structure and function.

Published in:

Cellular & Molecular Life Sciences, 2008, v. 65, n. 7/8, p. 1176, doi. 10.1007/s00018-008-7393-y

By:

Calvin, K.;
Li, H.

Publication type:

Article

Transfer RNA Genes Affect Chromosome Structure and Function via Local Effects.

Published in:

Molecular & Cellular Biology, 2019, v. 39, n. 8, p. 1, doi. 10.1128/MCB.00432-18

By:

Hamdani, Omar;
Dhillon, Namrita;
Hsieh, Tsung-Han S.;
Takahiro Fujita;
Ocampo, Josefina;
Kirkland, Jacob G.;
Lawrimore, Josh;
Kobayashi, Tetsuya J.;
Friedman, Brandon;
Fulton, Derek;
Wu, Kenneth Y.;
Chereji, Răzvan V.;
Masaya Oki;
Bloom, Kerry;
Clark, David J.;
Rando, Oliver J.;
Kamakaka, Rohinton T.

Publication type:

Article

Molecular Glue for RNA: Regulating RNA Structure and Function through Synthetic RNA Binding Molecules.

Published in:

ChemBioChem, 2019, v. 20, n. 23, p. 2903, doi. 10.1002/cbic.201900223

By:

Dohno, Chikara;
Nakatani, Kazuhiko

Publication type:

Article

Subunits of E. coli RNA polymerase in function and structure.

Published in:

Journal of Cellular Physiology, 1969, v. 74, p. 223, doi. 10.1002/jcp.1040740423

By:

Ishihama, Akira

Publication type:

Article

Modified oligoribonucleotides as site-specific probes of RNA structure and function.

Published in:

Biopolymers, 1998, v. 48, n. 1, p. 39, doi. 10.1002/(SICI)1097-0282(1998)48:1<39::AID-BIP5>3.0.CO;2-A

By:

Earnshaw, David J.;
Gait, Michael J.

Publication type:

Article

The equilibrium partition function and base pair binding probabilities for RNA secondary structure.

Published in:

Biopolymers, 1990, v. 29, n. 6/7, p. 1105, doi. 10.1002/bip.360290621

By:

McCaskill, J. S.

Publication type:

Article

The RNA Polymerase Structure–Function Study (1962–2001).

Published in:

Molecular Biology, 2002, v. 36, n. 2, p. 143, doi. 10.1023/A:1015349301749

By:

Nikiforov, V. G.

Publication type:

Article

Recent Insights Into the Structure, Function, and Evolution of the RNA-Splicing Endonucleases.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00103

By:

Hirata, Akira

Publication type:

Article

Special Issue: Computational Analysis of RNA Structure and Function.

Published in:

2019

By:

Gorodkin, Jan

Publication type:

Editorial

Structure and function of cis‐acting RNA elements of flavivirus.

Published in:

Reviews in Medical Virology, 2020, v. 30, n. 1, p. N.PAG, doi. 10.1002/rmv.2092

By:

Liu, Zhong‐Yu;
Qin, Cheng‐Feng

Publication type:

Article

2′-SCF<sub>3</sub> Uridine-A Powerful Label for Probing Structure and Function of RNA by <sup>19</sup>F NMR Spectroscopy.

Published in:

Angewandte Chemie, 2012, v. 124, n. 52, p. 13257, doi. 10.1002/ange.201207128

By:

Fauster, Katja;
Kreutz, Christoph;
Micura, Ronald

Publication type:

Article

Fluorescent ribonucleoside analogues as probes for investigating RNA structure and function.

Published in:: Pure & Applied Chemistry, 2011, v. 83, n. 1, p. 213, doi. 10.1351/PAC-CON-10-09-16
Publication type:: Article

Photoswitchable molecular glue for RNA: reversible photocontrol of structure and function of the ribozyme.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 18, p. 9533, doi. 10.1093/nar/gkad690

By:

Dohno, Chikara;
Kimura, Maki;
Fujiwara, Yusuke;
Nakatani, Kazuhiko

Publication type:

Article

Fitness functions for RNA structure design.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 7, p. e40, doi. 10.1093/nar/gkad097

By:

Ward, Max;
Courtney, Eliot;
Rivas, Elena

Publication type:

Article