Works matching Pseudogenes

Results: 3868

The abundance of processed pseudogenes derived from glycolytic genes is correlated with their expression level.

Published in:

Genome, 2012, v. 55, n. 2, p. 147, doi. 10.1139/g2012-002

By:

McDonell, Laura;
Drouin, Guy;
Bureau, T.E.

Publication type:

Article

Pseudogene Annexin A2 Pseudogene 1 Contributes to Hepatocellular Carcinoma Progression by Modulating Its Parental Gene ANXA2 via miRNA-376a-3p.

Published in:

Digestive Diseases & Sciences, 2021, v. 66, n. 11, p. 3903, doi. 10.1007/s10620-020-06734-0

By:

Ou, Huohui;
Liu, Qingbo;
Lin, Jie;
He, Wei;
Zhang, Weijie;
Ma, Jing;
Wang, Weidong

Publication type:

Article

Processed pseudogenes: A substrate for evolutionary innovation: Retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory potential throughout the genome.

Published in:

BioEssays, 2021, v. 43, n. 11, p. 1, doi. 10.1002/bies.202100186

By:

Troskie, Robin‐Lee;
Faulkner, Geoffrey J.;
Cheetham, Seth W.

Publication type:

Article

Identification of processed pseudogenes in the genome of Thoroughbred horses: Possibility of gene‐doping detection considering the presence of pseudogenes.

Published in:

Animal Genetics, 2022, v. 53, n. 2, p. 183, doi. 10.1111/age.13174

By:

Tozaki, Teruaki;
Ohnuma, Aoi;
Kikuchi, Mio;
Ishige, Taichiro;
Kakoi, Hironaga;
Hirota, Kei‐ichi;
Kusano, Kanichi;
Nagata, Shun‐ichi

Publication type:

Article

Occurrence of mitochondrial CO1 pseudogenes in Neocalanus plumchrus (Crustacea: Copepoda): Hybridization indicated by recombined nuclear mitochondrial pseudogenes.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0172710

By:

Machida, Ryuji J.;
Lin, Ya-Ying

Publication type:

Article

Using Pseudogene Database to Identify Lineage-Specific Genes and Pseudogenes in Humans and Chimpanzees.

Published in:

Journal of Heredity, 2014, v. 105, n. 3, p. 436, doi. 10.1093/jhered/est097

By:

Zhang, Qu

Publication type:

Article

Pseudogenes as Functionally Significant Elements of the Genome.

Published in:

Biochemistry (00062979), 2018, v. 83, n. 11, p. 1332, doi. 10.1134/S0006297918110044

By:

Kovalenko, T. F.;
Patrushev, L. I.

Publication type:

Article

Identification of potential pseudogenes for predicting the prognosis of hepatocellular carcinoma.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 15, p. 14255, doi. 10.1007/s00432-023-05241-9

By:

Ge, Luqi;
Jin, Tiefeng;
Zhang, Wanli;
Zhang, Zhentao;
Zhang, Yiwen;
Hu, Xiaoping;
Zhang, Wen;
Song, Feifeng;
Huang, Ping

Publication type:

Article

The World of Pseudogenes: New Diagnostic and Therapeutic Targets in Cancers or Still Mystery Molecules?

Published in:

Life (2075-1729), 2021, v. 11, n. 12, p. 1354, doi. 10.3390/life11121354

By:

Stasiak, Maciej;
Kolenda, Tomasz;
Kozłowska-Masłoń, Joanna;
Sobocińska, Joanna;
Poter, Paulina;
Guglas, Kacper;
Paszkowska, Anna;
Bliźniak, Renata;
Teresiak, Anna;
Kazimierczak, Urszula;
Lamperska, Katarzyna

Publication type:

Article

Pseudo2GO: A Graph-Based Deep Learning Method for Pseudogene Function Prediction by Borrowing Information From Coding Genes.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.00807

By:

Fan, Kunjie;
Zhang, Yan

Publication type:

Article

Expression, Interaction, and Role of Pseudogene Adh6-ps1 in Cancer Phenotypes.

Published in:

Bioinformatics & Biology Insights, 2021, p. 1, doi. 10.1177/11779322211040591

By:

Nwadiugwu, Martin C

Publication type:

Article

Expression, Interaction, and Role of Pseudogene Adh6-ps1 in Cancer and other Disease Phenotypes.

Published in:

Bioinformatics & Biology Insights, 2021, v. 15, p. 1, doi. 10.1177/11779322211040591

By:

Nwadiugwu, Martin C.

Publication type:

Article

Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 7, p. 1792, doi. 10.1093/gbe/evy140

By:

Danneels, Bram;
Pinto-Carbó, Marta;
Carlier, Aurelien

Publication type:

Article

The Trouble withMEAM2: Implications of Pseudogenes on Species Delimitation in the Globally Invasive Bemisia tabaci (Hemiptera: Aleyrodidae) Cryptic Species Complex.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 10, p. 2732, doi. 10.1093/gbe/evx173

By:

Tay, Wee Tek;
Elfekih, Samia;
Court, Leon N.;
Gordon, Karl H. J.;
Delatte, Hélène;
De Barro, Paul J.

Publication type:

Article

PRKRAP1 and Other Pseudogenes in Movement Disorders: The Troublemakers in Genetic Analyses Are More Than Genomic Fossils.

Published in:

Movement Disorders Clinical Practice, 2022, v. 9, n. 5, p. 698, doi. 10.1002/mdc3.13499

By:

Magrinelli, Francesca;
Lohmann, Katja

Publication type:

Article

Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.984579

By:

Jiao Zhang;
Xiulian Chi;
Juying Zhong;
Fernie, Alisdair;
Alseekh, Saleh;
Luqi Huang;
Dan Qian

Publication type:

Article

Extensive nrDNA ITS polymorphism in Lycium: Non-concerted evolution and the identification of pseudogenes.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.984579

By:

Jiao Zhang;
Xiulian Chi;
Juying Zhong;
Fernie, Alisdair;
Alseekh, Saleh;
Luqi Huang;
Dan Qian

Publication type:

Article

Global Intersection of Long Non-Coding RNAs with Processed and Unprocessed Pseudogenes in the Human Genome.

Published in:

Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00026

By:

Milligan, Michael J.;
Harvey, Erin;
Yu, Albert;
Morgan, Ashleigh L.;
Smith, Daniela L.;
Zhang, Eden;
Berengut, Jonathan;
Sivananthan, Jothini;
Subramaniam, Radhini;
Skoric, Aleksandra;
Collins, Scott;
Damski, Caio;
Morris, Kevin V.;
Lipovich, Leonard;
Kolatkar, Prasanna R.;
Perreault, Jonathan;
Muro, Enrique M.

Publication type:

Article

Pseudogene-derived lncRNAs: emerging regulators of gene expression.

Published in:

Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2014.00476

By:

Milligan, Michael J.;
Lipovich, Leonard

Publication type:

Article

A pseudogene-signature in glioma predicts survival.

Published in:

Journal of Experimental & Clinical Cancer Research (17569966), 2015, v. 34, n. 1, p. 1, doi. 10.1186/s13046-015-0137-6

By:

Kai-Ming Gao;
Xin-cheng Chen;
Jun-xia Zhang;
Yingyi Wang;
Wei Yan;
Yong-Ping You

Publication type:

Article

Single nucleotide polymorphisms in the MYLKP1 pseudogene are associated with increased colon cancer risk in African Americans.

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0200916

By:

Lynn, Heather;
Sun, Xiaoguang;
Ayshiev, Djanybek;
Siegler, Jessica H.;
Rizzo, Alicia N.;
Karnes, Jason H.;
Gonzales Garay, Manuel;
Wang, Ting;
Casanova, Nancy;
Camp, Sara M.;
Ellis, Nathan A.;
Garcia, Joe GN

Publication type:

Article

Pseudogenes in Juvenile Nasopharyngeal Angiofibroma: First Pilot Observation.

Published in:

Indian Journal of Otolaryngology & Head & Neck Surgery, 2022, v. 74, p. 1237, doi. 10.1007/s12070-020-02336-4

By:

Pankaj, Pandey;
Anupam, Mishra;
Amita, Pandey;
Veerendra, Verma;
Shivani, Pandey

Publication type:

Article

Identifying a "pseudogene" for the mitochondrial DNA COI region of the corixid aquatic insect, Hesperocorixa distanti (Heteroptera, Corixidae).

Published in:

Limnology, 2020, v. 21, n. 3, p. 319, doi. 10.1007/s10201-020-00618-y

By:

Yano, Koki;
Takenaka, Masaki;
Mitamura, Toshimasa;
Tojo, Koji

Publication type:

Article

PseudoFuN: Deriving functional potentials of pseudogenes from integrative relationships with genes and microRNAs across 32 cancers.

Published in:

GigaScience, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1093/gigascience/giz046

By:

Johnson, Travis S;
Li, Sihong;
Franz, Eric;
Huang, Zhi;
Dan Li, Shuyu;
Campbell, Moray J;
Huang, Kun;
Zhang, Yan

Publication type:

Article

Aberrant Expression of Pseudogene-Derived lncRNAs as an Alternative Mechanism of Cancer Gene Regulation in Lung Adenocarcinoma.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00138

By:

Stewart, Greg L.;
Enfield, Katey S. S.;
Sage, Adam P.;
Martinez, Victor D.;
Minatel, Brenda C.;
Pewarchuk, Michelle E.;
Marshall, Erin A.;
Lam, Wan L.

Publication type:

Article

Pseudogene product YqiG is important for pflB expression and biohydrogen production in Escherichia coli BW25113.

Published in:

3 Biotech, 2018, v. 8, n. 10, p. 1, doi. 10.1007/s13205-018-1461-2

By:

Zakaria, Muhammad Azman;
Mohd Yusoff, Mohd Zulkhairi;
Zakaria, Mohd Rafein;
Hassan, Mohd Ali;
Wood, Thomas K.;
Maeda, Toshinari

Publication type:

Article

PER3P1 pseudogene modulates PER3 oscillation: a new player in the molecular clock network.

Published in:

Biological Rhythm Research, 2022, v. 53, n. 12, p. 1906, doi. 10.1080/09291016.2022.2050978

By:

Najari-Hanjani, Parisa;
Farazmandfar, Touraj;
Golalipour, Masoud

Publication type:

Article

Structural Features and Physiological Associations of Human 14-3-3ζ Pseudogenes.

Published in:

Genes, 2024, v. 15, n. 4, p. 399, doi. 10.3390/genes15040399

By:

Lughmani, Haroon;
Patel, Hrushil;
Chakravarti, Ritu

Publication type:

Article

Functional Characterization of a Phf8 Processed Pseudogene in the Mouse Genome.

Published in:

Genes, 2023, v. 14, n. 1, p. 172, doi. 10.3390/genes14010172

By:

St-Germain, Joannie;
Khan, Muhammad Riaz;
Bavykina, Viktoriia;
Desmarais, Rebecka;
Scott, Micah;
Boissonneault, Guylain;
Brunet, Marie A.;
Laurent, Benoit

Publication type:

Article

Association of Inherited Copy Number Variation in ADAM3A and ADAM5 Pseudogenes with Oropharynx Cancer Risk and Outcome.

Published in:

Genes, 2022, v. 13, n. 12, p. 2408, doi. 10.3390/genes13122408

By:

Carron, Juliana;
Torricelli, Caroline;
Silva, Janet Keller;
Liu, Yichuan;
Pellegrino, Renata;
Lima, Carmen Silvia Passos;
Lourenço, Gustavo Jacob

Publication type:

Article

A Four-Pseudogene Classifier Identified by Machine Learning Serves as a Novel Prognostic Marker for Survival of Osteosarcoma.

Published in:

Genes, 2019, v. 10, n. 6, p. 414, doi. 10.3390/genes10060414

By:

Liu, Feng;
Xing, Lu;
Zhang, Xiaoqian;
Zhang, Xiaoqi

Publication type:

Article

The HMGA1 Pseudogene 7 Induces miR-483 and miR-675 Upregulation by Activating Egr1 through a ceRNA Mechanism.

Published in:

Genes, 2017, v. 8, n. 11, p. 330, doi. 10.3390/genes8110330

By:

De Martino, Marco;
Palma, Giuseppe;
Azzariti, Amalia;
Arra, Claudio;
Fusco, Alfredo;
Esposito, Francesco

Publication type:

Article

AURKAPS1, HERC2P2 and SDHAP1 pseudogenes: molecular role in development and progression of head and neck squamous cell carcinomas and their diagnostic utility.

Published in:

Reports of Practical Oncology & Radiotherapy, 2024, v. 29, n. 6, p. 718, doi. 10.5603/rpor.104016

By:

Kolenda, Tomasz;
Kozłowska-Masłoń, Joanna;
Mantaj, Patrycja;
Grzejda, Nina;
Kamiński, Kacper;
Dziuba, Maria;
Czarnecka, Małgorzata;
Leszczyńska, Aleksandra;
Poter, Paulina;
Guglas, Kacper;
Dudek, Klaudia;
Regulska, Katarzyna;
Gieremek, Paulina;
Stanisz, Beata;
Florczak-Substyk, Anna;
Janiczek-Polewska, Marlena;
Kazimierczak, Urszula;
Lamperska, Katarzyna;
Cybulski, Zefiryn;
Teresiak, Anna

Publication type:

Article

Evaluation of coding-independent functions of the transcribed bovine aromatase pseudogene CYP19P1.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 2, doi. 10.1186/1756-0500-7-378

By:

Chwalisz, Marina;
Fürbass, Rainer

Publication type:

Article

The Spatio-Temporal Expression Profiles of Silkworm Pseudogenes Provide Valuable Insights into Their Biological Roles.

Published in:

Evolutionary Bioinformatics, 2024, p. 1, doi. 10.1177/11769343241261814

By:

Wan, Linrong;
Su, Siyuan;
Liu, Jinyun;
Zou, Bangxing;
Jiang, Yaming;
Jiao, Beibei;
Tang, Shaokuan;
Zhang, Youhong;
Deng, Cao;
Xiao, Wenfu

Publication type:

Article

Characterization of pseudogenes in members of the order Frankineae.

Published in:

Journal of Biosciences, 2013, v. 38, n. 4, p. 727, doi. 10.1007/s12038-013-9356-1

By:

Sur, Saubashya;
Saha, Sangita;
Tisa, Louis S;
Bothra, Asim K;
Sen, Arnab

Publication type:

Article

Nuclear mtDNA pseudogenes as a source of new variants of the mtDNA cytochrome b haplotypes: A case study of Siberian rubythroat Luscinia calliope (Muscicapidae, Aves).

Published in:

Russian Journal of Genetics, 2016, v. 52, n. 9, p. 952, doi. 10.1134/S1022795416090131

By:

Spiridonova, L.;
Valchuk, O.;
Red'kin, Ya.;
Kryukov, A.

Publication type:

Article

Predicting Pseudogene–miRNA Associations Based on Feature Fusion and Graph Auto-Encoder.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.781277

By:

Zhou, Shijia;
Sun, Weicheng;
Zhang, Ping;
Li, Li

Publication type:

Article

PB-Motif—A Method for Identifying Gene/Pseudogene Rearrangements With Long Reads: An Application to CYP21A2 Genotyping.

Published in:

Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.716586

By:

Stephens, Zachary;
Milosevic, Dragana;
Kipp, Benjamin;
Grebe, Stefan;
Iyer, Ravishankar K.;
Kocher, Jean-Pierre A.

Publication type:

Article

Molecular Evolution of PTEN Pseudogenes in Mammals.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167851

By:

Tang, Jingsi;
Ning, Ruihong;
Zeng, Bo;
Li, Ying

Publication type:

Article

Quantitative Analysis of Pseudogene-Associated Errors During Germline Variant Calling.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 1, p. 363, doi. 10.3390/ijms26010363

By:

Podvalnyi, Artem;
Kopernik, Arina;
Sayganova, Mariia;
Woroncow, Mary;
Zobkova, Gauhar;
Smirnova, Anna;
Esibov, Anton;
Deviatkin, Andrey;
Volchkov, Pavel;
Albert, Eugene

Publication type:

Article

Pseudogenes and Their Genome-Wide Prediction in Plants.

Published in:

International Journal of Molecular Sciences, 2016, v. 17, n. 12, p. 1991, doi. 10.3390/ijms17121991

By:

Jin Xiao;
Sekhwal, Manoj Kumar;
Pingchuan Li;
Ragupathy, Raja;
Cloutier, Sylvie;
Xiue Wang;
You, Frank M.

Publication type:

Article

Comparative Analysis of a Putative Tuberculosis-Susceptibility Gene, MC3R, and Pseudogene Sequences in Cattle, African Buffalo, Hyena, Rhinoceros and Other African Bovids and Ruminants.

Published in:

Cytogenetic & Genome Research, 2012, v. 136, n. 2, p. 117, doi. 10.1159/000335464

By:

Müller, A.;
Möller, M.;
Adams, L.A.;
Warren, R.M.;
Hoal, E.G.;
van Helden, P.D.

Publication type:

Article

Genome‐wide profiling of N6‐methyladenosine‐modified pseudogene‐derived long noncoding RNAs reveals the tumour‐promoting and innate immune‐restraining function of RPS15AP12 in ovarian cancer.

Published in:

Clinical & Translational Medicine, 2025, v. 15, n. 3, p. 1, doi. 10.1002/ctm2.70249

By:

Xu, Jie;
Ren, Yifei;
Lu, Jiayi;
Qin, Fengjiang;
Yang, Dan;
Tang, Chunyan;
Yang, Yu;
Xu, Jing;
Liu, Tao;
Yi, Ping

Publication type:

Article

Discovery of non-reference processed pseudogenes in the Swedish population.

Published in:

Frontiers in Genetics, 2023, p. 01, doi. 10.3389/fgene.2023.1176626

By:

Berk de Boer, Esmee Ten;
Saether, Kristine Bilgrav;
Eisfeldt, Jesper

Publication type:

Article

Processed pseudogene insertions in somatic cells.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-20

By:

Kazazian Jr., Haig H.

Publication type:

Article

Alternative translation initiation codons for the plastid maturase MatK: unraveling the pseudogene misconception in the Orchidaceae.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0491-1

By:

Barthet, Michelle M.;
Moukarzel, Keenan;
Smith, Kayla N.;
Patel, Jaimin;
Hilu, Khidir W.

Publication type:

Article

Alternative translation initiation codons for the plastid maturase MatK: unraveling the pseudogene misconception in the Orchidaceae.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0491-1

By:

Barthet, Michelle M.;
Moukarzel, Keenan;
Smith, Kayla N.;
Patel, Jaimin;
Hilu, Khidir W.

Publication type:

Article

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04180-x

By:

Porter, T. M.;
Hajibabaei, M.

Publication type:

Article

Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 7, p. 1, doi. 10.1093/molbev/msac153

By:

Syberg-Olsen, Mitchell J;
Garber, Arkadiy I;
Keeling, Patrick J;
McCutcheon, John P;
Husnik, Filip

Publication type:

Article