Works matching Peptide sequence

Results: 5000

LLM4THP: a computing tool to identify tumor homing peptides by molecular and sequence representation of large language model based on two-layer ensemble model strategy.

Published in:

Amino Acids, 2024, v. 56, n. 1, p. 1, doi. 10.1007/s00726-024-03422-5

By:

Yang, Sen;
Xu, Piao

Publication type:

Article

The Effects of Sequence Length and Composition of Random Sequence Peptides on the Growth of E. coli Cells.

Published in:

Genes, 2021, v. 12, n. 12, p. 1913, doi. 10.3390/genes12121913

By:

Castro, Johana F.;
Tautz, Diethard

Publication type:

Article

PEPTIDE SEQUENCE TAG EXTRACTION BY GRAPH CONVOLUTION NEURAL NETWORKS.

Published in:

Scalable Computing: Practice & Experience, 2025, v. 26, n. 1, p. 151, doi. 10.12694/scpe.v26i1.3722

By:

XINYE BIAN;
DONGMEI XIE;
DI ZHANG;
XIAOYU XIE;
YUYUE FENG;
PIYU ZHOU;
CHANGJIU HE;
MINGMING LYU;
HAIPENG WANG

Publication type:

Article

Short peptide sequence identity between human viruses and HLA-B27-binding human 'self' peptides.

Published in:

Theory in Biosciences, 2014, v. 133, n. 2, p. 79, doi. 10.1007/s12064-013-0196-1

By:

Sun, Shipeng;
Wang, Tao;
Pang, Bo;
Wei, Huamin;
Liu, Guijian

Publication type:

Article

Synergy of Iron Chelators and Therapeutic Peptide Sequences Delivered via a Magnetic Nanocarrier.

Published in:

Journal of Functional Biomaterials, 2017, v. 8, n. 3, p. 23, doi. 10.3390/jfb8030023

By:

Abayaweera, Gayani S.;
Hongwang Wang;
Shrestha, Tej B.;
Jing Yu;
Angle, Kyle;
Thapa, Prem;
Malalasekera, Aruni P.;
Maurmann, Leila;
Troyer, Deryl L.;
Bossmann, Stefan H.

Publication type:

Article

Sequence Determination of an Antioxidant Peptide Obtained by Enzymatic Hydrolysis of Oyster Crassostrea madrasensis (Preston).

Published in:

International Journal of Peptide Research & Therapeutics, 2016, v. 22, n. 3, p. 421, doi. 10.1007/s10989-016-9521-0

By:

Asha, K.;
Remya Kumari, K.;
Ashok Kumar, K.;
Chatterjee, Niladri;
Anandan, R.;
Mathew, Suseela

Publication type:

Article

Development of multi-epitope vaccines targeting wild-type-sequence p53 peptides.

Published in:

Expert Review of Vaccines, 2008, v. 7, n. 7, p. 1031, doi. 10.1586/14760584.7.7.1031

By:

DeLeo, Albert B.;
Whiteside, Theresa L.

Publication type:

Article

Development of chemiluminescence method based on serum type I collagen hydroxyl terminal peptide β special sequence (β-CTX).

Published in:

Scandinavian Journal of Clinical & Laboratory Investigation, 2021, v. 81, n. 6, p. 494, doi. 10.1080/00365513.2021.1952484

By:

Huo, Zhen;
Liu, Xueke;
Wu, Yongfeng;
Liang, Yong;
Xu, Ruyue;
Ma, Yongfang;
Song, Li;
Shen, Jing;
Tang, Xiaolong

Publication type:

Article

The peptide analogue of MCP-1 65–76 sequence is an inhibitor of inflammation.

Published in:

Canadian Journal of Physiology & Pharmacology, 2007, v. 85, p. 332, doi. 10.1139/Y07-008

By:

Bespalova, Janna D.;
Arefieva, Tatiana I.;
Kukhtina, Nadezhda B.;
Sidorova, Maria V.;
Provatorov, Sergey I.;
Krasnikova, Tatiana L.;
Chazov, Evgeny I.

Publication type:

Article

An investigation into plasmolysis in the oomycete Achlya bisexualis reveals that membrane-wall attachment points are sensitive to peptides containing the sequence RGD and that cell wall deposition can occur despite retraction of the protoplast.

Published in:: Canadian Journal of Microbiology, 2012, v. 58, n. 10, p. 1212, doi. 10.1139/w2012-099
Publication type:: Article

The Study of REMD Simulation of SEB-Binding Repetitive Peptide Sequences.

Published in:

Karaelmas Science & Engineering Journal / Karaelmas Fen ve Mühendislik Dergisi, 2017, v. 7, n. 1, p. 206

By:

Kılıç, Nesrin;
Demir, Kadir

Publication type:

Article

Sequence-to-sequence translation from mass spectra to peptides with a transformer model.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49731-x

By:

Yilmaz, Melih;
Fondrie, William E.;
Bittremieux, Wout;
Melendez, Carlo F.;
Nelson, Rowan;
Ananth, Varun;
Oh, Sewoong;
Noble, William Stafford

Publication type:

Article

Exploring the sequence space for (tri-)peptide self-assembly to design and discover new hydrogels.

Published in:

Nature Chemistry, 2015, v. 7, n. 1, p. 30, doi. 10.1038/nchem.2122

By:

Frederix, Pim W. J. M.;
Scott, Gary G.;
Abul-Haija, Yousef M.;
Kalafatovic, Daniela;
Pappas, Charalampos G.;
Javid, Nadeem;
Hunt, Neil T.;
Ulijn, Rein V.;
Tuttle, Tell

Publication type:

Article

Investigation of noncovalent interactions between peptides with potential intrinsic sequence patterns by mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2020, v. 34, n. 10, p. 1, doi. 10.1002/rcm.8736

By:

Shutong Yang;
Qi Guo;
Fangling Wu;
Yanqiu Chu;
Yuhong Wang;
Mingfei Zhou;
Chuan-Fan Ding

Publication type:

Article

Elucidating the sequence of intact bioactive peptides by using electron capture dissociation and hot electron capture dissociation in a linear radio-frequency quadrupole ion trap.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2013, v. 27, n. 23, p. 2710, doi. 10.1002/rcm.6731

By:

Satake, Hiroyuki;
Manri, Naomi;
Kaneko, Akihito;
Hirabayashi, Atsumu;
Hasegawa, Hideki;
Hashimoto, Yuichiro;
Baba, Takashi;
Sakamoto, Takeshi;
Masuda, Katsuyoshi

Publication type:

Article

Polymer Nanoparticles with Uniform Monomer Sequences for Sequence‐Specific Peptide Recognition.

Published in:

Angewandte Chemie, 2022, v. 134, n. 30, p. 1, doi. 10.1002/ange.202206456

By:

Saito, Yusuke;
Honda, Ryutaro;
Akashi, Sotaro;
Takimoto, Hinata;
Nagao, Masanori;
Miura, Yoshiko;
Hoshino, Yu

Publication type:

Article

Improved prediction of anti-angiogenic peptides based on machine learning models and comprehensive features from peptide sequences.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-65062-9

By:

Lee, Yun-Chen;
Yu, Jen-Chieh;
Ni, Kuan;
Lin, Yu-Chuan;
Chen, Ching-Tai

Publication type:

Article

Data storage using peptide sequences.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24496-9

By:

Ng, Cheuk Chi A.;
Tam, Wai Man;
Yin, Haidi;
Wu, Qian;
So, Pui-Kin;
Wong, Melody Yee-Man;
Lau, Francis C. M.;
Yao, Zhong-Ping

Publication type:

Article

The sequence-dependent morphology of self-assembly peptides after binding with organophosphorus nerve agent VX.

Published in:

Nano Research, 2024, v. 17, n. 11, p. 9834, doi. 10.1007/s12274-024-6841-9

By:

Lei, Xiangmin;
Gan, Dingwei;
Chen, Jianan;
Liu, Haochi;
Wu, Jianfeng;
Liu, Jifeng

Publication type:

Article

Synthesis, Characterization and Lipophilicity Study of Brucella abortus' Immunogenic Peptide Sequence That Can Be Used in the Future Vaccination Studies.

Published in:

International Journal of Peptide Research & Therapeutics, 2019, v. 25, n. 3, p. 911, doi. 10.1007/s10989-018-9739-0

By:

Acar, Tayfun;
Pelit Arayıcı, Pelin;
Ucar, Burcu;
Karahan, Mesut;
Mustafaeva, Zeynep

Publication type:

Article

QSPR-Perturbation Models for the Prediction of B-Epitopes from Immune Epitope Database: A Potentially Valuable Route for Predicting 'In Silico' New Optimal Peptide Sequences and/or Boundary Conditions for Vaccine Development.

Published in:

International Journal of Peptide Research & Therapeutics, 2016, v. 22, n. 4, p. 445, doi. 10.1007/s10989-016-9524-x

By:

Vázquez-Prieto, Severo;
Paniagua, Esperanza;
Ubeira, Florencio;
González-Díaz, Humberto

Publication type:

Article

Influenza-specific cytotoxic T-cell recognition is inhibited by peptides unrelated in both sequence and MHC restriction.

Published in:

Immunology, 1989, v. 66, n. 2, p. 163

By:

Bodmer, H.C.;
Bastin, J.M.;
Askonas, B.A.;
Townsend, A.R.M.

Publication type:

Article

Novel bioactive peptides sequences released by in vitro digestion of proteins isolated from Amaranthus hypochondriacus.

Published in:

Natural Product Research, 2022, v. 36, n. 13, p. 3485, doi. 10.1080/14786419.2020.1862837

By:

Ayala-Niño, Alexis;
Castañeda-Ovando, Araceli1;
Jaimez-Ordaz, Judith;
Rodríguez-Serrano, Gabriela Mariana;
Sánchez-Franco, José Antonio;
González-Olivares, Luis Guillermo

Publication type:

Article

Improved LC–MS identification of short homologous peptides using sequence-specific retention time predictors.

Published in:

Analytical & Bioanalytical Chemistry, 2023, v. 415, n. 14, p. 2715, doi. 10.1007/s00216-023-04670-2

By:

Hollebrands, Boudewijn;
Hageman, Jos A.;
van de Sande, Jasper W.;
Albada, Bauke;
Janssen, Hans-Gerd

Publication type:

Article

Probability-based pattern recognition and statistical framework for randomization: modeling tandem mass spectrum/peptide sequence false match frequencies.

Published in:

Bioinformatics, 2007, v. 23, n. 17, p. 2210, doi. 10.1093/bioinformatics/btm267

By:

Jian Feng;
Daniel Q. Naiman;
Bret Cooper

Publication type:

Article

West Nile virus diagnosis and vaccination: using unique viral peptide sequences to evoke specific immune responses.

Published in:

Immunopharmacology & Immunotoxicology, 2013, v. 35, n. 1, p. 64, doi. 10.3109/08923973.2012.736521

By:

Capone, Giovanni;
Lucchese, Guglielmo;
Calabrò, Michele;
Kanduc, Darja

Publication type:

Article

SARS-CoV-2 Consensus-Sequence and Matching Overlapping Peptides Design for COVID19 Immune Studies and Vaccine Development.

Published in:

Vaccines, 2020, v. 8, n. 3, p. 444, doi. 10.3390/vaccines8030444

By:

Olvera, Alex;
Noguera-Julian, Marc;
Kilpelainen, Athina;
Romero-Martín, Luis;
Prado, Julia G.;
Brander, Christian

Publication type:

Article

Anti-cancer Peptide Recognition Based on Grouped Sequence and Spatial Dimension Integrated Networks.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2022, v. 14, n. 1, p. 196, doi. 10.1007/s12539-021-00481-0

By:

You, Hongfeng;
Yu, Long;
Tian, Shengwei;
Ma, Xiang;
Xing, Yan;
Song, Jinmiao;
Wu, Weidong

Publication type:

Article

Improvement of Epitope Prediction Using Peptide Sequence Descriptors and Machine Learning.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 18, p. 4362, doi. 10.3390/ijms20184362

By:

Munteanu, Cristian R.;
Gestal, Marcos;
Martínez-Acevedo, Yunuen G.;
Pedreira, Nieves;
Pazos, Alejandro;
Dorado, Julián

Publication type:

Article

Plastoglobule-Targeting Competence of a Putative Transit Peptide Sequence from Rice Phytoene Synthase 2 in Plastids.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 1, p. 18, doi. 10.3390/ijms18010018

By:

Min Kyoung You;
Jin Hwa Kim;
Yeo Jin Lee;
Ye Sol Jeong;
Sun-Hwa Ha

Publication type:

Article

ISOLATION OF TWO BOVINE AMELOGENIN PEPTIDES AND THEIR AMINO ACID SEQUENCES.

Published in:

Advances in Dental Research, 1987, v. 1, n. 2, p. 276, doi. 10.1177/08959374870010021701

By:

YEH, J.-H.;
TAKAGI, T.;
SASAKI, S.

Publication type:

Article

Sequence‐Optimized Peptide Nanofibers as Growth Stimulators for Regeneration of Peripheral Neurons.

Published in:

Advanced Functional Materials, 2019, v. 29, n. 24, p. N.PAG, doi. 10.1002/adfm.201809112

By:

Schilling, Corinna;
Mack, Thomas;
Lickfett, Selene;
Sieste, Stefanie;
Ruggeri, Francesco S.;
Sneideris, Tomas;
Dutta, Arghya;
Bereau, Tristan;
Naraghi, Ramin;
Sinske, Daniela;
Knowles, Tuomas P. J.;
Synatschke, Christopher V.;
Weil, Tanja;
Knöll, Bernd

Publication type:

Article

A Machine Learning Method to Identify Umami Peptide Sequences by Using Multiplicative LSTM Embedded Features.

Published in:

Foods, 2023, v. 12, n. 7, p. 1498, doi. 10.3390/foods12071498

By:

Jiang, Jici;
Li, Jiayu;
Li, Junxian;
Pei, Hongdi;
Li, Mingxin;
Zou, Quan;
Lv, Zhibin

Publication type:

Article

ToxGIN: an In silico prediction model for peptide toxicity via graph isomorphism networks integrating peptide sequence and structure information.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 6, p. 1, doi. 10.1093/bib/bbae583

By:

Yu, Qiule;
Zhang, Zhixing;
Liu, Guixia;
Li, Weihua;
Tang, Yun

Publication type:

Article

A Compressed Sequence Tag Index for Fast Peptide Retrieval and Efficient Storage in Protein Identification Search Engines.

Published in:

Applied Sciences (2076-3417), 2025, v. 15, n. 12, p. 6482, doi. 10.3390/app15126482

By:

Xie, Xiaoyu;
Feng, Yuyue;
Zhou, Piyu;
Zhang, Di;
Yao, Lijin;
Wang, Haipeng

Publication type:

Article

Automated Detection of Conformational Epitopes Using Phage Display Peptide Sequences.

Published in:

Bioinformatics & Biology Insights, 2009, n. 3, p. 71, doi. 10.4137/BBI.S2745

By:

Negi, Surendra S.;
Braun, Werner

Publication type:

Article

THE EQUILIBRIUM THERMODYNAMICS OF VARIOUS PEPTIDE SEQUENCES.

Published in:

International Journal of Modern Physics C: Computational Physics & Physical Computation, 2004, v. 15, n. 4, p. 583

By:

YAŞAR, FATİH

Publication type:

Article

Phylogenetic connections and comparisons of the amino acid sequences of several peptide inducers of microbial origin-A foundation study for development of novel biopesticides.

Published in:

Journal of Biopesticides, 2023, v. 16, n. 1, p. 9, doi. 10.57182/jbiopestic.16.1.09-15

By:

Devi, Suvala Shalini;
Akshitha, Chanduri;
Bandaram, Aparna;
Chandra, Bomma Sharath;
Vaishnavi, Vulishe

Publication type:

Article

Recipe for β-Sheets: Foldamers Containing Amyloidogenic Peptide Sequences.

Published in:

European Journal of Organic Chemistry, 2013, v. 2013, n. 17, p. 3523, doi. 10.1002/ejoc.201300221

By:

Spencer, Ryan;
Chen, Kevin H.;
Manuel, Gerald;
Nowick, James S.

Publication type:

Article

Generating DNA sequences encoding tandem peptide repeats suitable for expression and immunological application.

Published in:

World Journal of Microbiology & Biotechnology, 2012, v. 28, n. 5, p. 2175, doi. 10.1007/s11274-012-1023-4

By:

Hou, Hongwei;
Zhang, Zhiqian;
Zhao, Wei;
Hou, Jinyan

Publication type:

Article

Receptorphin: A conserved peptide derived from the sequence of the opioid receptor, with opioid displacement activity and potent antiproliferative actions in tumor cells.

Published in:

BMC Pharmacology, 2001, v. 1, p. 9, doi. 10.1186/1471-2210-1-9

By:

Kampa, Marilena;
Loukas, Spyros;
Tsapis, Andreas;
Castanas, Elias

Publication type:

Article

Template‐assisted Flexible‐to‐rigid Transition of Peptides in Head‐to‐tail Self‐polymerization Enables Sequence‐controllable and Post‐modifiable Peptide Nanofibers.

Published in:

Angewandte Chemie, 2025, v. 137, n. 4, p. 1, doi. 10.1002/ange.202415809

By:

Chen, Tianzi;
Liu, Yin;
Gao, Zhanshan;
Gao, Yue;
Chen, Haijin;
Ye, Haonan;
Luo, Qiuhao;
Wang, Kefeng;
Wu, Dongdong

Publication type:

Article

The Effect of Soluble Peptide Sequences on Neurite Extension on 2D Collagen Substrates and Within 3D Collagen Gels.

Published in:

Annals of Biomedical Engineering, 2007, v. 35, n. 12, p. 2159, doi. 10.1007/s10439-007-9389-4

By:

Matthew Blewitt;
Rebecca Willits

Publication type:

Article

PeptideLocator: prediction of bioactive peptides in protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1120, doi. 10.1093/bioinformatics/btt103

By:

Mooney, Catherine;
Haslam, Niall J.;
Holton, Thérèse A.;
Pollastri, Gianluca;
Shields, Denis C.

Publication type:

Article

A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain–peptide interaction from primary sequence.

Published in:

Bioinformatics, 2011, v. 27, n. 3, p. 383, doi. 10.1093/bioinformatics/btq657

By:

Shao, Xiaojian;
Tan, Chris S. H.;
Voss, Courtney;
Li, Shawn S. C.;
Deng, Naiyang;
Bader, Gary D.

Publication type:

Article

Peptibody Based on FGFR1-Binding Peptides From the FGF4 Sequence as a Cancer-Targeting Agent.

Published in:

Frontiers in Pharmacology, 2021, v. 12, p. 1, doi. 10.3389/fphar.2021.748936

By:

Jendryczko, Karolina;
Rzeszotko, Jakub;
Krzyscik, Mateusz Adam;
Szymczyk, Jakub;
Otlewski, Jacek;
Szlachcic, Anna

Publication type:

Article

Preview: Temporin-/Vespid Chemotactic Peptide- (or T/V-) Like Peptides and Their Consensus Sequences.

Published in:: Wade Research Foundation Reports, 2010, v. 5, n. 1, p. 1
Publication type:: Article

In vivo phage display screen for peptide sequences that cross the blood-cerebrospinal-fluid barrier.

Published in:

Amino Acids, 2015, v. 47, n. 2, p. 401, doi. 10.1007/s00726-014-1874-0

By:

Li, Jingwei;
Feng, Liang;
Jiang, Xinguo

Publication type:

Article

Characterizing circular peptides in mixtures: sequence fragment assembly of cyclotides from a violet plant by MALDI-TOF/TOF mass spectrometry.

Published in:

Amino Acids, 2013, v. 44, n. 2, p. 581, doi. 10.1007/s00726-012-1376-x

By:

Hashempour, Hossein;
Koehbach, Johannes;
Daly, Norelle;
Ghassempour, Alireza;
Gruber, Christian

Publication type:

Article

Identification of peptide sequences that target to the brain using in vivo phage display.

Published in:

Amino Acids, 2012, v. 42, n. 6, p. 2373, doi. 10.1007/s00726-011-0979-y

By:

Li, Jingwei;
Zhang, Qizhi;
Pang, Zhiqing;
Wang, Yuchen;
Liu, Qingfeng;
Guo, Liangran;
Jiang, Xinguo

Publication type:

Article