Works matching Molecular clock

Results: 4380

Modeling Substitution Rate Evolution across Lineages and Relaxing the Molecular Clock.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 9, p. 1, doi. 10.1093/gbe/evae199

By:

Mello, Beatriz;
Schrago, Carlos G

Publication type:

Article

Clinical Mycobacterium tuberculosis isolates exhibit a molecular clock rate below 1 SNP per genome per year.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1591792

By:

Wang, Jun-Li;
Chen, Ya-Li;
Guan, Cui-Ping;
Yu, Kan;
Wang, Mao-Shui

Publication type:

Article

Proof on the Divergence Times of Two Sympatric Species, Rhynchophorus ferrugineus and R. vulneratus (Coleoptera: Curculionidae) by Molecular Clock Analysis.

Published in:

Journal of the Entomological Research Society, 2021, v. 23, n. 1, p. 11, doi. 10.51963/jers.v23i1.1851

By:

AMAN-ZUKI, Ameyra;
GHAZALI, Siti Zafirah;
BADRULISHAM, Aqilah Sakinah;
HAZMI, Izfa Riza;
NURUL WAHIDA, Othman;
YAAKOP, Salmah

Publication type:

Article

Fifty-Year Old and Still Ticking.... An Interview with Emile Zuckerkandl on the 50th Anniversary of the Molecular Clock.

Published in:

2012

By:

Bernardi, Giacomo

Publication type:

Letter

Oscillation in expression of Adenylyl Cyclase isoforms: new insight to regulation of molecular clock.

Published in:

Biological Rhythm Research, 2017, v. 48, n. 1, p. 113, doi. 10.1080/09291016.2016.1234756

By:

Mohamadian, Somaye;
Golalipour, Masoud;
Yazdani, Yaghoub;
Farazmandfar, Touraj;
Tabarraei, Alijan;
Shahbazi, Majid

Publication type:

Article

ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 4, p. 1, doi. 10.1093/gbe/evae064

By:

Duchêne, David A;
Duchêne, Sebastián;
Stiller, Josefin;
Heller, Rasmus;
Ho, Simon Y W

Publication type:

Article

RelTime Relaxes the Strict Molecular Clock throughout the Phylogeny.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1631, doi. 10.1093/gbe/evy118

By:

Battistuzzi, Fabia U.;
Qiqing Tao;
Jones, Lance;
Koichiro Tamura;
Kumar, Sudhir

Publication type:

Article

A multilocus timescale for oomycete evolution estimated under three distinct molecular clock models.

Published in:

BMC Evolutionary Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2148-14-101

By:

Matari, Nahill H.;
Blair, Jaime E.

Publication type:

Article

Molecular clocks keep dispersal hypotheses afloat: evidence for trans-Atlantic rafting by rodents.

Published in:

Journal of Biogeography, 2010, v. 37, n. 2, p. 305, doi. 10.1111/j.1365-2699.2009.02190.x

By:

Rowe, Diane L.;
Dunn, Katherine A.;
Adkins, Ronald M.;
Honeycutt, Rodney L.

Publication type:

Article

Detecting Episodic Evolution through Bayesian Inference of Molecular Clock Models.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad212

By:

Tay, John H;
Baele, Guy;
Duchene, Sebastian

Publication type:

Article

Regional effect on the molecular clock rate of protein evolution in Eutherian and Metatherian genomes.

Published in:

BMC Ecology & Evolution, 2021, v. 21, p. 1, doi. 10.1186/s12862-021-01882-x

By:

Huttener, Raf;
Thorrez, Lieven;
in't Veld, Thomas;
Potter, Barney;
Baele, Guy;
Granvik, Mikaela;
Van Lommel, Leentje;
Schuit, Frans

Publication type:

Article

Congruence test of molecular clock calibration hypotheses based on Bayes factor comparisons.

Published in:

Methods in Ecology & Evolution, 2014, v. 5, n. 3, p. 226, doi. 10.1111/2041-210X.12151

By:

Andújar, Carmelo;
Soria‐Carrasco, Víctor;
Serrano, José;
Gómez‐Zurita, Jesús;
Freckleton, Robert

Publication type:

Article

The disrupted molecular circadian clock of monocytes and macrophages in allergic inflammation.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1408772

By:

Teppan, Julia;
Schwanzer, Juliana;
Rittchen, Sonja;
Bärnthaler, Thomas;
Lindemann, Jörg;
Nayak, Barsha;
Reiter, Bernhard;
Luschnig, Petra;
Farzi, Aitak;
Heinemann, Akos;
Sturm, Eva

Publication type:

Article

The endogenous molecular clock orchestrates the temporal separation of substrate metabolism in skeletal muscle.

Published in:

Skeletal Muscle, 2015, v. 5, n. 1, p. 1, doi. 10.1186/s13395-015-0039-5

By:

Hodge, Brian A.;
Yuan Wen;
Riley, Lance A.;
Xiping Zhang;
England, Jonathan H.;
Harfmann, Brianna D.;
Schroder, Elizabeth A.;
Esser, Karyn A.

Publication type:

Article

Age estimation based on different molecular clocks in several tissues and a multivariate approach: an explorative study.

Published in:

International Journal of Legal Medicine, 2020, v. 134, n. 2, p. 721, doi. 10.1007/s00414-019-02054-9

By:

Becker, Julia;
Mahlke, Nina Sophia;
Reckert, A.;
Eickhoff, S. B.;
Ritz-Timme, S.

Publication type:

Article

The choice of tree prior and molecular clock does not substantially affect phylogenetic inferences of diversification rates.

Published in:

PeerJ, 2019, p. 1, doi. 10.7717/peerj.6334

By:

Sarver, Brice A. J.;
Pennell, Matthew W.;
Brown, Joseph W.;
Keeble, Sara;
Hardwick, Kayla M.;
Sullivan, Jack;
Harmon, Luke J.

Publication type:

Article

Clockor2: Inferring Global and Local Strict Molecular Clocks Using Root-to-Tip Regression.

Published in:

Systematic Biology, 2024, v. 73, n. 3, p. 623, doi. 10.1093/sysbio/syae003

By:

Featherstone, Leo A;
Rambaut, Andrew;
Duchene, Sebastian;
Wirth, Wytamma

Publication type:

Article

The Molecular Clock in the Evolution of Protein Structures.

Published in:

Systematic Biology, 2019, v. 68, n. 6, p. 987, doi. 10.1093/sysbio/syz022

By:

Pascual-García, Alberto;
Arenas, Miguel;
Bastolla, Ugo

Publication type:

Article

Using Fossils to Break Long Branches in Molecular Dating: A Comparison of Relaxed Clocks Applied to the Origin of Angiosperms.

Published in:

Systematic Biology, 2010, v. 59, n. 4, p. 384, doi. 10.1093/sysbio/syq027

By:

MAGALLÓN, SUSANA

Publication type:

Article

Relaxed Molecular Clocks, the Bias–Variance Trade-off, and the Quality of Phylogenetic Inference.

Published in:

Systematic Biology, 2010, v. 59, n. 1, p. 1, doi. 10.1093/sysbio/syp072

By:

WERTHEIM, JOEL O.;
SANDERSON, MICHAEL J.;
WOROBEY, MICHAEL;
BJORK, ADAM

Publication type:

Article

Molecular clock of HIV-1 envelope genes under early immune selection.

Published in:

Retrovirology, 2016, v. 13, p. 1, doi. 10.1186/s12977-016-0269-6

By:

Sung Yong Park;
Love, Tanzy M. T.;
Perelson, Alan S.;
Mack, Wendy J.;
Ha Youn Lee

Publication type:

Article

Revisiting a Classic Study of the Molecular Clock.

Published in:

2016

By:

Robinson, Lauren;
Boland, Joseph;
Braverman, John

Publication type:

Letter

Dating placentalia: Morphological clocks fail to close the molecular fossil gap.

Published in:

Evolution, 2016, v. 70, n. 4, p. 873, doi. 10.1111/evo.12907

By:

Puttick, Mark N.;
Thomas, Gavin H.;
Benton, Michael J.

Publication type:

Article

Histamine Regulates Molecular Clock Oscillations in Human Retinal Pigment Epithelial Cells via H<sub>1</sub> Receptors.

Published in:

Frontiers in Endocrinology, 2018, p. 1, doi. 10.3389/fendo.2018.00108

By:

Morioka, Eri;
Kanda, Yuzuki;
Koizumi, Hayato;
Miyamoto, Tsubasa;
Ikeda, Masayuki

Publication type:

Article

The molecular clock in the skin, its functionality, and how it is disrupted in cutaneous melanoma: a new pharmacological target?

Published in:

Cellular & Molecular Life Sciences, 2019, v. 76, n. 19, p. 3801, doi. 10.1007/s00018-019-03183-5

By:

de Assis, Leonardo Vinícius Monteiro;
Moraes, Maria Nathalia;
Castrucci, Ana Maria de Lauro

Publication type:

Article

Divergence time estimates of mammals from molecular clocks and fossils: Relevance of new fossil finds from India.

Published in:

Journal of Biosciences, 2009, v. 34, n. 5, p. 649, doi. 10.1007/s12038-009-0063-x

By:

Prasad, G.

Publication type:

Article

Evolutionary history of genus Macrobrachium inferred from mitochondrial markers: a molecular clock approach.

Published in:

Mitochondrial DNA. Part A, 2019, v. 30, n. 1, p. 92, doi. 10.1080/24701394.2018.1462347

By:

Jose, Deepak;
Harikrishnan, Mahadevan

Publication type:

Article

Puzzling rocks and complicated clocks: how to optimize molecular dating approaches in historical phytogeography.

Published in:

New Phytologist, 2016, v. 209, n. 4, p. 1353, doi. 10.1111/nph.13676

By:

Wang, Qian;
Mao, Kang‐Shan

Publication type:

Article

The origin of animals: Can molecular clocks and the fossil record be reconciled?

Published in:

BioEssays, 2017, v. 39, n. 1, p. 1, doi. 10.1002/bies.201600120

By:

Liu, Alexander G.;
Donoghue, Philip C. J.;
Cunningham, John A.;
Bengtson, Stefan

Publication type:

Article

Rate variation during molecular evolution: creationism and the cytochrome c molecular clock.

Published in:

Evolution: Education & Outreach, 2017, v. 10, n. 1, p. 1, doi. 10.1186/s12052-017-0064-4

By:

Hofmann, James R.

Publication type:

Article

Counterbalancing the time-dependent effect on the human mitochondrial DNA molecular clock.

Published in:

BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-01640-5

By:

Cabrera, Vicente M.

Publication type:

Article

Molecular clocks in ancient proteins: Do they reflect the age at death even after millennia?

Published in:

International Journal of Legal Medicine, 2021, v. 135, n. 4, p. 1225, doi. 10.1007/s00414-021-02522-1

By:

Mahlke, Nina Sophia;
Renhart, Silvia;
Talaa, Dorothea;
Reckert, Alexandra;
Ritz-Timme, Stefanie

Publication type:

Article

Molecular clocks, biogeography and species diversity in Herichthys with evaluation of the role of Punta del Morro as a vicariant brake along the Mexican Transition Zone in the context of local and global time frame of cichlid diversification.

Published in:

PeerJ, 2020, p. 1, doi. 10.7717/peerj.8818

By:

Pérez-Miranda, Fabian;
Mejia, Omar;
López, Benjamín;
Říčan, Oldřich

Publication type:

Article

Beyond fossil calibrations: realities of molecular clock practices in evolutionary biology.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00138

By:

Hipsley, Christy A.;
Müller, Johannes

Publication type:

Article

Calibrating the chitons (Mollusca: Polyplacophora) molecular clock with the mitochondrial DNA cytochrome C oxidase I gene.

Published in:

Revista de Biologia Marina y Oceanografía (RBMO), 2014, v. 49, n. 2, p. 193

By:

García-Ríos, Cedar I.;
Pérez-Pérez, Nivette M.;
Fernández-López, Joanne;
Fuentes, Francisco A.

Publication type:

Article

Diarylethene Molecular Clocks for Dual‐Mode Time‐Dependent Data Encryption.

Published in:

Advanced Functional Materials, 2025, v. 35, n. 15, p. 1, doi. 10.1002/adfm.202419483

By:

Liu, Jie;
Liang, Baoshuai;
Dong, Yu;
Wu, Huacan;
Zhang, Chuang;
Pei, Haizhou;
Zuo, Mengdi;
Yu, Xiaolan;
Zheng, Shiya;
Feng, Shiyu;
Huang, Weiguo

Publication type:

Article

Richard Dickerson, Molecular Clocks, and Rates of Protein Evolution.

Published in:

Journal of Molecular Evolution, 2021, v. 89, n. 3, p. 122, doi. 10.1007/s00239-020-09973-x

By:

Alvarez-Ponce, David

Publication type:

Article

Dating the origin and diversification of Pan-Chelidae (Testudines, Pleurodira) under multiple molecular clock approaches.

Published in:

Contributions to Zoology, 2020, v. 89, n. 2, p. 146, doi. 10.1163/18759866-20191419

By:

Holley, J. Alfredo;
Sterli, Juliana;
Basso, Néstor G.

Publication type:

Article

Melanopsin DNA aptamers can regulate input signals of mammalian circadian rhythms by altering the phase of the molecular clock.

Published in:

Frontiers in Neuroscience, 2024, p. 1, doi. 10.3389/fnins.2024.1186677

By:

Kazuo Nakazawa;
Minako Matsuo;
Yo Kikuchi;
Yoshihiro Nakajima;
Rika Numano

Publication type:

Article

Validating a molecular clock for nudibranchs—No fossils to the rescue.

Published in:

Ecology & Evolution (20457758), 2024, v. 14, n. 2, p. 1, doi. 10.1002/ece3.11014

By:

Layton, Kara K. S.;
Wilson, Nerida G.

Publication type:

Article

Molecular and morphological clocks for estimating evolutionary divergence times.

Published in:

BMC Ecology & Evolution, 2021, v. 21, p. 1, doi. 10.1186/s12862-021-01798-6

By:

Barba-Montoya, Jose;
Qiqing Tao;
Kumar, Sudhir

Publication type:

Article

Fossil-calibrated molecular clock data enable reconstruction of steps leading to differentiated multicellularity and anisogamy in the Volvocine algae.

Published in:

BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01878-1

By:

Lindsey, Charles Ross;
Knoll, Andrew H.;
Herron, Matthew D.;
Rosenzweig, Frank

Publication type:

Article

Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech).

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030014

By:

Knapp, Michael;
Stöckler, Karen;
Havell, David;
Delsuc, Frédéric;
Sebastiani, Federico;
Lockhart, Peter J

Publication type:

Article

The Molecular Circadian Clock Is a Target of Anti-cancer Translation Inhibitors.

Published in:

Journal of Biological Rhythms, 2024, v. 39, n. 1, p. 20, doi. 10.1177/07487304231202561

By:

Berthier, Alexandre;
Gheeraert, Céline;
Johanns, Manuel;
Vinod, Manjula;
Staels, Bart;
Eeckhoute, Jérôme;
Lefebvre, Philippe

Publication type:

Article

Aging Affects the Capacity of Photoperiodic Adaptation Downstream from the Central Molecular Clock.

Published in:

Journal of Biological Rhythms, 2020, v. 35, n. 2, p. 167, doi. 10.1177/0748730419900867

By:

Buijink, M. Renate;
Olde Engberink, Anneke H. O.;
Wit, Charlotte B.;
Almog, Assaf;
Meijer, Johanna H.;
Rohling, Jos H. T.;
Michel, Stephan

Publication type:

Article

Core Molecular Clock Factors Regulate Osteosarcoma Stem Cell Survival and Behavior via CSC/EMT Pathways and Lipid Droplet Biogenesis.

Published in:

Cells (2073-4409), 2025, v. 14, n. 7, p. 517, doi. 10.3390/cells14070517

By:

Bhoumik, Sukanya;
Lee, Yool

Publication type:

Article

PER3P1 pseudogene modulates PER3 oscillation: a new player in the molecular clock network.

Published in:

Biological Rhythm Research, 2022, v. 53, n. 12, p. 1906, doi. 10.1080/09291016.2022.2050978

By:

Najari-Hanjani, Parisa;
Farazmandfar, Touraj;
Golalipour, Masoud

Publication type:

Article

Restoration of the molecular clock is tumor suppressive in neuroblastoma.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24196-4

By:

Moreno-Smith, Myrthala;
Milazzo, Giorgio;
Tao, Ling;
Fekry, Baharan;
Zhu, Bokai;
Mohammad, Mahmoud A.;
Di Giacomo, Simone;
Borkar, Roshan;
Reddy, Karthik Reddy Kami;
Capasso, Mario;
Vasudevan, Sanjeev A.;
Sumazin, Pavel;
Hicks, John;
Putluri, Nagireddy;
Perini, Giovanni;
Eckel-Mahan, Kristin;
Burris, Thomas P.;
Barbieri, Eveline

Publication type:

Article

Time to Train: The Involvement of the Molecular Clock in Exercise Adaptation of Skeletal Muscle.

Published in:

Frontiers in Physiology, 2022, v. 13, p. 1, doi. 10.3389/fphys.2022.902031

By:

Mansingh, Shivani;
Handschin, Christoph

Publication type:

Article

Development of Non-Ethoxypropanoic Acid Type Cryptochrome Inhibitors with Circadian Molecular Clock-Enhancing Activity by Bioisosteric Replacement.

Published in:

Pharmaceuticals (14248247), 2021, v. 14, n. 6, p. 496, doi. 10.3390/ph14060496

By:

Jeong, Yong Uk;
Jin, Hyo-Eon;
Lim, Hye Young;
Choi, Goyeong;
Joo, Hansol;
Kang, Bohun;
Lee, Ga-Hyun;
Liu, Kwang-Hyeon;
Maeng, Han-Joo;
Chung, Sooyoung;
Son, Gi Hoon;
Jung, Jong-Wha

Publication type:

Article