Works matching Microbial genomics

Results: 4590

Microbial genomics: a potential toolkit for forensic investigations.

Published in:

Forensic Science, Medicine & Pathology, 2025, v. 21, n. 1, p. 417, doi. 10.1007/s12024-024-00830-7

By:

Tripathi, Pooja;
Render, Riya;
Nidhi, Sweta;
Tripathi, Vijay

Publication type:

Article

Selective Microbial Genomic DNA Isolation Using Restriction Endonucleases.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109061

By:

Barnes, Helen E.;
Liu, Guohong;
Weston, Christopher Q.;
King, Paula;
Pham, Long K.;
Waltz, Shannon;
Helzer, Kimberly T.;
Day, Laura;
Sphar, Dan;
Yamamoto, Robert T.;
Forsyth, R. Allyn

Publication type:

Article

Microbial genomic taxonomy.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-913

By:

Thompson, Cristiane C.;
Chimetto, Luciane;
Edwards, Robert A.;
Swings, Jean;
Stackebrandt, Erko;
Thompson, Fabiano L.

Publication type:

Article

Microbial Genomics: Innovative Targets and Mechanisms.

Published in:

Antibiotics (2079-6382), 2023, v. 12, n. 2, p. 190, doi. 10.3390/antibiotics12020190

By:

Alkatheri, Asma Hussain;
Yap, Polly Soo-Xi;
Abushelaibi, Aisha;
Lai, Kok-Song;
Cheng, Wan-Hee;
Erin Lim, Swee-Hua

Publication type:

Article

CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060120

By:

Vesth, Tammi;
Lagesen, Karin;
Acar, Öncel;
Ussery, David

Publication type:

Article

Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream.

Published in:

Nature Biotechnology, 2009, v. 27, n. 7, p. 627, doi. 10.1038/nbt.1552

By:

Kyrpides, Nikos C.

Publication type:

Article

The Role of Microbial Genomics in Restoration Ecology: An Introduction.

Published in:

Microbial Ecology, 2023, v. 85, n. 3, p. 779, doi. 10.1007/s00248-023-02207-9

By:

Lemke, Michael;
DeSalle, Rob

Publication type:

Article

Microbial Genomics of a Host-Associated Commensal Bacterium in Fragmented Populations of Endangered Takahe.

Published in:

Microbial Ecology, 2016, v. 71, n. 4, p. 1020, doi. 10.1007/s00248-015-0721-5

By:

Grange, Zoë;
Gartrell, Brett;
Biggs, Patrick;
Nelson, Nicola;
Anderson, Marti;
French, Nigel

Publication type:

Article

Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0134-1

By:

Federhen, Scott;
Rossello-Mora, Ramon;
Klenk, Hans-Peter;
Tindall, Brian;
Konstantinidis, Konstantinos;
Whitman, William;
Brown, Daniel;
Labeda, David;
Ussery, David;
Garrity, George;
Colwell, Rita;
Hasan, Nur;
Graf, Joerg;
Parte, Aidan;
Yarza, Pablo;
Goldberg, Brittany;
Sichtig, Heike;
Karsch-Mizrachi, Ilene;
Clark, Karen;
McVeigh, Richard

Publication type:

Article

Microbial population genomics and ecology: the road ahead.

Published in:

2004

By:

Delong, Edward F.

Publication type:

Editorial

A Customized Monkeypox Virus Genomic Database (MPXV DB v1.0) for Rapid Sequence Analysis and Phylogenomic Discoveries in CLC Microbial Genomics.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 1, p. 40, doi. 10.3390/v15010040

By:

Shen-Gunther, Jane;
Cai, Hong;
Wang, Yufeng

Publication type:

Article

From Microbial Genomics to Metagenomics.

Published in:

International Journal of Genomics, 2020, p. 1, doi. 10.1155/2020/9357450

By:

Kant, Ravi;
Kumar, Abhishek;
Sironen, Tarja

Publication type:

Article

Back to Basics: A Simplified Improvement to Multiple Displacement Amplification for Microbial Single-Cell Genomics.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4270, doi. 10.3390/ijms24054270

By:

Sobol, Morgan S.;
Kaster, Anne-Kristin

Publication type:

Article

HPV Integration Site Mapping: A Rapid Method of Viral Integration Site (VIS) Analysis and Visualization Using Automated Workflows in CLC Microbial Genomics.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 15, p. 8132, doi. 10.3390/ijms23158132

By:

Shen-Gunther, Jane;
Cai, Hong;
Wang, Yufeng

Publication type:

Article

Microbial Environmental Genomics.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 367, doi. 10.1007/s00248-007-9214-5

By:

Nelson, Karen E.;
Methé, Barbara A.;
Kowalchuk, George A.

Publication type:

Article

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1947, doi. 10.1093/bioinformatics/bts273

By:

Langille, Morgan G. I.;
Laird, Matthew R.;
Hsiao, William W. L.;
Chiu, Terry A.;
Eisen, Jonathan A.;
Brinkman, Fiona S. L.

Publication type:

Article

Exploring Genomics and Microbial Ecology: Analysis of Bidens pilosa L. Genetic Structure and Soil Microbiome Diversity by RAD-Seq and Metabarcoding.

Published in:

Plants (2223-7747), 2024, v. 13, n. 2, p. 221, doi. 10.3390/plants13020221

By:

Reyes-Ardila, Wendy Lorena;
Rugeles-Silva, Paula Andrea;
Duque-Zapata, Juan Diego;
Vélez-Martínez, Glever Alexander;
Tarazona Pulido, Lina;
Cardona Tobar, Karen Melissa;
Díaz Gallo, Sergio Alberto;
Muñoz Flórez, Jaime Eduardo;
Díaz-Ariza, Lucia Ana;
López-Alvarez, Diana

Publication type:

Article

Editorial: Extremophiles: Microbial genomics and taxogenomics.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.984632

By:

de la Haba, Rafael R.;
Antunes, André;
Hedlund, Brian P.

Publication type:

Article

Population Genomics of Microbial Biostalactites: Non-recombinogenic Genome Islands and Microdiversification by Transposons.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.828531

By:

Burkartová, Kateřina;
Dresler, Jiří;
Rídl, Jakub;
Falteisek, Lukáš

Publication type:

Article

Eukaryote Microbial Genomics.

Published in:: BMC Genomics, 2012, v. 13, n. 1, p. 89, doi. 10.1186/1471-2164-13-89
Publication type:: Article

The importance of genome sequence quality to microbial comparative genomics.

Published in:

2019

By:

Smits, Theo H. M.

Publication type:

Editorial

Pneumococcal Predictive Proteins Selected by Microbial Genomic Approach Are Serotype Cross-Reactive and Bind to Host Extracellular Matrix Proteins.

Published in:

Applied Biochemistry & Biotechnology, 2017, v. 182, n. 4, p. 1518, doi. 10.1007/s12010-017-2415-6

By:

Argondizzo, Ana;
Rocha-de-Souza, Cláudio;
Almeida Santiago, Marta;
Galler, Ricardo;
Reis, Joice;
Medeiros, Marco

Publication type:

Article

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Published in:

Frontiers in Genetics, 2015, p. 1, doi. 10.3389/fgene.2015.00235

By:

Olson, Nathan D.;
Lund, Steven P.;
Colman, Rebecca E.;
Foster, Jeffrey T.;
Sahl, Jason W.;
Schupp, James M.;
Keim, Paul;
Morrow, Jayne B.;
Salit, Marc L.;
Zook, Justin M.

Publication type:

Article

Trajectories of freshwater microbial genomics and greenhouse gas saturation upon glacial retreat.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38806-w

By:

Wei, Jing;
Fontaine, Laurent;
Valiente, Nicolas;
Dörsch, Peter;
Hessen, Dag O.;
Eiler, Alexander

Publication type:

Article

micropan: an R-package for microbial pan-genomics.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0517-0

By:

Snipen, Lars;
Liland, Kristian Hovde

Publication type:

Article

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution.

Published in:

Journal of Heredity, 2017, v. 108, n. 4, p. 431, doi. 10.1093/jhered/esx033

By:

Xuhua Xia

Publication type:

Article

Recent developments of software and database in microbial genomics and functional genomics.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 732, doi. 10.1093/bib/bby013

By:

Gao, Feng

Publication type:

Article

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.

Published in:

Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.00242

By:

Zoe K. Sanchez;
Kazuhide Kimbara;
Masaki Shintani

Publication type:

Article

Novel Genetic Techniques and Approaches in the Microbial Genomics Era: Identification and/or Validation of Targets for the Discovery of New Antibacterial Agents.

Published in:

Drugs in R&D, 2007, v. 8, n. 4, p. 201, doi. 10.2165/00126839-200708040-00001

By:

Pucci, Michael J.

Publication type:

Article

The seventh pandemic of cholera in Europe revisited by microbial genomics.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19185-y

By:

Oprea, Mihaela;
Njamkepo, Elisabeth;
Cristea, Daniela;
Zhukova, Anna;
Clark, Clifford G.;
Kravetz, Anatoly N.;
Monakhova, Elena;
Ciontea, Adriana S.;
Cojocaru, Radu;
Rauzier, Jean;
Damian, Maria;
Gascuel, Olivier;
Quilici, Marie-Laure;
Weill, François-Xavier

Publication type:

Article

Marine microbial genomics in Europe: current status and perspectives.

Published in:

Microbial Biotechnology, 2010, v. 3, n. 5, p. 523, doi. 10.1111/j.1751-7915.2010.00169.x

By:

Glöckner, Frank Oliver;
Joint, Ian

Publication type:

Article

Marine genomics: at the interface of marine microbial ecology and biodiscovery.

Published in:

Microbial Biotechnology, 2010, v. 3, n. 5, p. 531, doi. 10.1111/j.1751-7915.2010.00193.x

By:

Heidelberg, Karla B.;
Gilbert, Jack A.;
Joint, Ian

Publication type:

Article

Editorial: Community series-extremophiles: microbial genomics and taxogenomics, volume II.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1371210

By:

Antunes, André;
de la Haba, Rafael R.;
Jebbar, Mohamed;
Hedlund, Brian P.

Publication type:

Article

GoMRI Insights into Microbial Genomics and Hydrocarbon Bioremediation Response in Marine Ecosystems.

Published in:

Oceanography, 2021, v. 34, n. 1, p. 124, doi. 10.5670/oceanog.2021.121

By:

Weiman, Shannon;
Joye, Samantha B.;
Kostka, Joel E.;
Halanych, Kenneth M.;
Colwell, Rita R.

Publication type:

Article

Next-generation sequencing technologies and their impact on microbial genomics.

Published in:

Briefings in Functional Genomics, 2013, v. 12, n. 5, p. 440, doi. 10.1093/bfgp/els062

By:

Forde, Brian M.;
O’Toole, Paul W.

Publication type:

Article

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 4, p. 1531, doi. 10.1007/s00253-013-5457-x

By:

Baldrian, Petr;
López-Mondéjar, Rubén

Publication type:

Article

G-InforBIO: integrated system for microbial genomics.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 368, doi. 10.1186/1471-2105-7-368

By:

Tanaka, Naoto;
Abe, Takashi;
Miyazaki, Satoru;
Sugawara, Hideaki

Publication type:

Article

Interview with Martin Embley: on the occasion on the EMBO workshop on Comparative Genomics of Microbial Eukaryotes.

Published in:

Evolucion, 2020, v. 14, n. 1, p. 44

By:

Gabaldón, Toni

Publication type:

Article

The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad022

By:

Cornet, Luc;
Durieu, Benoit;
Baert, Frederik;
D'hooge, Elizabet;
Colignon, David;
Meunier, Loic;
Lupo, Valérian;
Cleenwerck, Ilse;
Daniel, Heide-Marie;
Rigouts, Leen;
Sirjacobs, Damien;
Declerck, Stéphane;
Vandamme, Peter;
Wilmotte, Annick;
Baurain, Denis;
Becker, Pierre

Publication type:

Article

酸面团中微生物基因组 DNA 提取方法的优化.

Published in:

Journal of Henan University of Technology Natural Science Edition, 2021, v. 42, n. 3, p. 38, doi. 10.16433/j.1673-2383.2021.03.006

By:

胡双;
李海峰;
符加珂;
李志建

Publication type:

Article

QitanTech Nanopore Long-Read Sequencing Enables Rapid Resolution of Complete Genomes of Multi-Drug Resistant Pathogens.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.778659

By:

Peng, Kai;
Yin, Yi;
Li, Yan;
Qin, Shangshang;
Liu, Yuan;
Yang, Xiaorong;
Wang, Zhiqiang;
Li, Ruichao

Publication type:

Article

Genome Sequencing and Analysis of Strains Bacillus sp. AKBS9 and Acinetobacter sp. AKBS16 for Biosurfactant Production and Bioremediation.

Published in:

Applied Biochemistry & Biotechnology, 2019, v. 187, n. 2, p. 518, doi. 10.1007/s12010-018-2828-x

By:

Jadeja, Niti B.;
Moharir, Prachiti;
Kapley, Atya

Publication type:

Article

Microbial genomic island discovery, visualization and analysis.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 5, p. 1685, doi. 10.1093/bib/bby042

By:

Bertelli, Claire;
Tilley, Keith E;
Brinkman, Fiona S L

Publication type:

Article

Editorial: Microbial comparative genomics and pangenomics: new tools, approaches and insights into gene and genome evolution.

Published in:

Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1490645

By:

Verma, Digvijay;
Satyanarayana, Tulasi;
Dias, Paulo Jorge

Publication type:

Article

Explaining microbial phenotypes on a genomic scale: GWAS for microbes.

Published in:

Briefings in Functional Genomics, 2013, v. 12, n. 4, p. 366, doi. 10.1093/bfgp/elt008

By:

Dutilh, Bas E.;
Backus, Lennart;
Edwards, Robert A.;
Wels, Michiel;
Bayjanov, Jumamurat R.;
van Hijum, Sacha A.F.T.

Publication type:

Article

Microbial Diversity and Open Questions about the Deep Tree of Life.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 4, p. 1, doi. 10.1093/gbe/evae053

By:

Eme, Laura;
Tamarit, Daniel

Publication type:

Article

NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads.

Published in:

Biology Methods & Protocols, 2024, v. 9, n. 1, p. 1, doi. 10.1093/biomethods/bpae057

By:

Hallgren, Malte B;
Clausen, Philip T L C;
Aarestrup, Frank M

Publication type:

Article

Potential applications of microbial genomics in nuclear non-proliferation.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1410820

By:

MacGregor, Heather;
Fukai, Isis;
Ash, Kurt;
Arkin, Adam Paul;
Hazen, Terry C.

Publication type:

Article

Effect of turmeric nanoparticles on gene expression of biofilm gene in Staphylococcus aureus.

Published in:

Microbial Biosystems Journal (International Scientific Journal of Microbial Biology), 2025, v. 10, n. 1, p. 234, doi. 10.21608/mb.2025.297763.1108

By:

Jabbar, Nargis H.;
Wahid, Wafaa M. Abdul

Publication type:

Article

Lung microbiota: implications and interactions in chronic pulmonary diseases.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 01, doi. 10.3389/fcimb.2024.1401448

By:

Jing Zhou;
Wang Hou;
Huilin Zhong;
Dan Liu

Publication type:

Article