Works matching Ligands (Biochemistry)

Results: 5000

Reversible Ligand Binding Reactions: WHY DO BIOCHEMISTRY STUDENTS HAVE TROUBLE CONNECTING THE DOTS?

Published in:

Biochemistry & Molecular Biology Education, 2007, v. 35, n. 2, p. 105, doi. 10.1002/bmb.29

By:

Sears, Duane W.;
Thompson, Scott E.;
Saxon, S. Robin

Publication type:

Article

Impact of Conformational Substates and Energy Landscapes on Understanding Hemoglobin Kinetics and Function.

Published in:

Journal of Biological Physics, 2021, v. 47, n. 4, p. 337, doi. 10.1007/s10867-021-09588-3

By:

Eaton, William A.

Publication type:

Article

Clustering Zwitterionic Amino Acids at the Upper Rim of Cone Calix[4]arene Triggers the Selective Recognition of Gram‐Negative Bacterial Envelope.

Published in:

Small Structures, 2025, v. 6, n. 6, p. 1, doi. 10.1002/sstr.202400547

By:

Rispoli, Francesco;
Moretti, Luca;
Vezzoni, Carlo Alberto;
Tosi, Eloisa;
Molteni, Linda;
Ciaramelli, Carlotta;
Marchiò, Luciano;
Volpi, Stefano;
Baldini, Laura;
Sansone, Francesco;
Palmioli, Alessandro;
Airoldi, Cristina;
Casnati, Alessandro

Publication type:

Article

Identification of heme as the ligand for the orphan nuclear receptors REV-ERBα and REV-ERBβ.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1207, doi. 10.1038/nsmb1344

By:

Raghuram, Srilatha;
Stayrook, Keith R.;
Huang, Pengxiang;
Rogers, Pamela M.;
Nosie, Amanda K.;
McClure, Don B.;
Burris, Lorri L.;
Khorasanizadeh, Sepideh;
Burris, Thomas P.;
Rastinejad, Fraydoon

Publication type:

Article

Structure-based design of a pathway-specific nuclear import inhibitor.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 5, p. 452, doi. 10.1038/nsmb1229

By:

Cansizoglu, Ahmet E.;
Lee, Brittany J.;
Zi Chao Zhang;
Fontoura, Beatriz M. A.;
Yuh Min Chook

Publication type:

Article

A Quantitative Model of Ligand Binding to the Glutamate Site of the GluR2 Subunit of AMPA Receptor.

Published in:

Doklady Biochemistry & Biophysics, 2003, v. 389, n. 1-6, p. 75, doi. 10.1023/A:1023623803790

By:

Tikhonova, I. G.;
Baskin, I. I.;
Palyulin, V. A.;
Zefirov, N. S.

Publication type:

Article

Comparative Analysis of the Ligand-Binding Sites of the Metabotropic Glutamate Receptors mGluR1–mGluR8.

Published in:

Doklady Biochemistry & Biophysics, 2002, v. 386, n. 1-6, p. 251, doi. 10.1023/A:1020755427019

By:

Belenikin, M. S.;
Baskin, I. I.;
Costantino, G.;
Palyulin, V. A.;
Pellicciari, R.;
Zefirov, N. S.

Publication type:

Article

Effects of Activators and Blockers of the Ligand-Operated Cl–Channels on the Chloride Sensitivity of Microsomal Mg2+-ATPase of Bream (Abramis brama L.) Brain.

Published in:

Doklady Biochemistry & Biophysics, 2001, v. 378, n. 1-6, p. 214, doi. 10.1023/A:1011525615780

By:

Menzikov, S. A.;
Menzikova, O. V.

Publication type:

Article

Bacterial over-production of the functionally active human SLC38A2 (SNAT2) exploiting the mistic tag: a cheap and fast tool for testing ligands.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-023-08976-3

By:

Galluccio, Michele;
Tripicchio, Martina;
Console, Lara;
Indiveri, Cesare

Publication type:

Article

A Hierarchical Approach to Cooperativity in Macromolecular and Self-Assembling Binding Systems.

Published in:

Journal of Biological Physics, 2008, v. 34, n. 1/2, p. 213, doi. 10.1007/s10867-008-9116-x

By:

Garcés, Josep;
Acerenza, Luis;
Mizraji, Eduardo;
Mas, Francesc

Publication type:

Article

Thermodynamics of binding of regulatory ligands to tissue transglutaminase.

Published in:

Amino Acids, 2010, v. 39, n. 1, p. 297, doi. 10.1007/s00726-009-0442-5

By:

Bergamini, Carlo M.;
Dondi, Alessia;
Lanzara, Vincenzo;
Squerzanti, Monica;
Cervellati, Carlo;
Montin, Katy;
Mischiati, Carlo;
Tasco, Gianluca;
Collighan, Russel;
Griffin, Martin;
Casadio, Rita

Publication type:

Article

LIGSIFT: an open-source tool for ligand structural alignment and virtual screening.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 539, doi. 10.1093/bioinformatics/btu692

By:

Roy, Ambrish;
Skolnick, Jeffrey

Publication type:

Article

Feature-incorporated alignment based ligand-binding residue prediction for carbohydrate-binding modules.

Published in:

Bioinformatics, 2010, v. 26, n. 8, p. 1022, doi. 10.1093/bioinformatics/btq084

By:

Wei-Yao Chou;
Wei-I Chou;
Tun-Wen Pai;
Shu-Chuan Lin;
Ting-Ying Jiang;
Chuan-Yi Tang;
Dah-Tsyr Chang, Margaret

Publication type:

Article

The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.

Published in:

Bioinformatics, 2009, v. 25, n. 5, p. 615, doi. 10.1093/bioinformatics/btp035

By:

Izhar Wallach;
Ryan Lilien

Publication type:

Article

TRITON: a graphical tool for ligand-binding protein engineering.

Published in:

Bioinformatics, 2008, v. 24, n. 17, p. 1955, doi. 10.1093/bioinformatics/btn344

By:

Prokop, Martin;
Adam, Jan;
Kříž, Zdeněek;
Wimmerová, Michaela;
Kočca, Jaroslav

Publication type:

Article

Receptor Dissociation Constants and the Information Entropy of Membranes Coding Ligand Concentration.

Published in:

Chemical Senses, 2001, v. 26, n. 2, p. 95, doi. 10.1093/chemse/26.2.95

By:

Getz, Wayne M.;
Lánsky, Petr

Publication type:

Article

Inhibition of MMP activity can restore NKG2D ligand expression in gastric cancer, leading to improved NK cell susceptibility.

Published in:

2016

By:

Shiraishi, Kensuke;
Mimura, Kousaku;
Kua, Ley-Fang;
Koh, Vivien;
Siang, Lim;
Nakajima, Shotaro;
Fujii, Hideki;
Shabbir, Asim;
Yong, Wei-Peng;
So, Jimmy;
Takenoshita, Seiichi;
Kono, Koji;
Siang, Lim Kee

Publication type:

journal article

Validation of extracellular ligand–receptor interactions by Flow-TriCEPS.

Published in:

BMC Research Notes, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13104-018-3974-5

By:

Lopez-Garcia, Laura A.;
Demiray, Levent;
Ruch-Marder, Sandra;
Hopp, Ann-Katrin;
Hottiger, Michael O.;
Helbling, Paul M.;
Pavlou, Maria P.

Publication type:

Article

Binding free energy decomposition and multiple unbinding paths of buried ligands in a PreQ<sub>1</sub> riboswitch.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009603

By:

Hu, Guodong;
Zhou, Huan-Xiang

Publication type:

Article

Poster Presentations.

Published in:: Journal of Labelled Compounds & Radiopharmaceuticals, 2017, v. 60, p. 111, doi. 10.1002/jlcr.3508
Publication type:: Article

In Silico Study of Potential Small Molecule TIPE2 Inhibitors for the Treatment of Cancer.

Published in:

Sci (2413-4155), 2023, v. 5, n. 4, p. 39, doi. 10.3390/sci5040039

By:

Wilson, Jerica;
Evangelou, Katerina;
Chen, Youhai H.;
Ji, Hai-Feng

Publication type:

Article

Ligand-induced activation of a formin-NPF pair leads to collaborative actin nucleation.

Published in:

Journal of Cell Biology, 2013, v. 201, n. 4, p. 595, doi. 10.1083/jcb.201212059

By:

Graziano, Brian R.;
Jonasson, Erin M.;
Pullen, Jessica G.;
Gould, Christopher J.;
Goode, Bruce L.

Publication type:

Article

Structure-based assessment and druggability classification of protein–protein interaction sites.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-12105-8

By:

Alzyoud, Lara;
Bryce, Richard A.;
Al Sorkhy, Mohammad;
Atatreh, Noor;
Ghattas, Mohammad A.

Publication type:

Article

An original approach to measure ligand/receptor binding affinity in non-purified samples.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-09217-6

By:

Rascol, Estelle;
Dufourquet, Anouk;
Baccouch, Rim;
Soule, Pierre;
Alves, Isabel D.

Publication type:

Article

Regulation of RXR-RAR Heterodimers by RXR- and RAR-Specific Ligands and Their Combinations.

Published in:

Cells (2073-4409), 2019, v. 8, n. 11, p. 1392, doi. 10.3390/cells8111392

By:

le Maire, Albane;
Teyssier, Catherine;
Balaguer, Patrick;
Bourguet, William;
Germain, Pierre

Publication type:

Article

Interactions between Siglec-8 and endogenous sialylated cis ligands restrain cell death induction in human eosinophils and mast cells.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1283370

By:

Yun Cao;
Rische, Clayton H.;
Bochner, Bruce S.;
O'Sullivan, Jeremy A.

Publication type:

Article

Improvement of binding pose prediction of the MR1 covalent ligands by inclusion of simple pharmacophore constraints and structural waters in the docking process.

Published in:

3 Biotech, 2023, v. 13, n. 8, p. 1, doi. 10.1007/s13205-023-03694-w

By:

Shamsara, Jamal;
Schüürmann, Gerrit

Publication type:

Article

Ligand-specific conformational change drives interdomain allostery in Pin1.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32340-x

By:

Born, Alexandra;
Soetbeer, Janne;
Henen, Morkos A.;
Breitgoff, Frauke;
Polyhach, Yevhen;
Jeschke, Gunnar;
Vögeli, Beat

Publication type:

Article

Ligand-induced activation of the insulin receptor: a multi-step process involving structural changes in both the ligand and the receptor.

Published in:

BioEssays, 2009, v. 31, n. 4, p. 422, doi. 10.1002/bies.200800210

By:

Ward, Colin W.;
Lawrence, Michael C.

Publication type:

Article

Distortion of the ligand molecule as a strategy for modulating binding affinity: Further studies involving complexes of jacalin with β-substituted disaccharides.

Published in:

IUBMB Life, 2017, v. 69, n. 2, p. 72, doi. 10.1002/iub.1593

By:

Abhinav, K. V.;
Sharma, Kaushal;
Surolia, A.;
Vijayan, Mamannamana

Publication type:

Article

Cooperativity and allostery in haemoglobin function.

Published in:

IUBMB Life, 2008, v. 60, n. 2, p. 112, doi. 10.1002/iub.6

By:

Ciaccio, Chiara;
Coletta, Andrea;
De Sanctis, Giampiero;
Marini, Stefano;
Coletta, Massimo

Publication type:

Article

Neuroglobin Ligand Binding Kinetics.

Published in:

IUBMB Life, 2004, v. 56, n. 11/12, p. 709, doi. 10.1080/15216540500037711

By:

Kiger, Laurent;
Uzan, Julien;
Dewilde, Sylvia;
Burmester, Thorsten;
Hankeln, Thomas;
Moens, Luc;
Hamdane, Djemel;
Baudin-Creuza, Veronique;
Marden, Michael

Publication type:

Article

Conformational Preferences of π- π Stacking Between Ligand and Protein, Analysis Derived from Crystal Structure Data Geometric Preference of π- π Interaction.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2015, v. 7, n. 3, p. 211, doi. 10.1007/s12539-015-0263-z

By:

Zhao, Yuan;
Li, Jue;
Gu, Hui;
Wei, Dongqing;
Xu, Yao-chang;
Fu, Wei;
Yu, Zhengtian

Publication type:

Article

Computational Study of Synthetic Agonist Ligands of Ionotropic Glutamate Receptors.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058774

By:

Wolter, Tino;
Steinbrecher, Thomas;
Elstner, Marcus

Publication type:

Article

Binding Pocket Optimization by Computational Protein Design.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0052505

By:

Malisi, Christoph;
Schumann, Marcel;
Toussaint, Nora C.;
Kageyama, Jorge;
Kohlbacher, Oliver;
Höcker, Birte

Publication type:

Article

Does Adhesive Capsulitis of the Shoulder Increase the Risk of Stroke? A Population-Based Propensity Score-Matched Follow-Up Study.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049343

By:

Chueh-Hung Wu;
Yen-Ho Wang;
Ya-Ping Huang;
Shin-Liang Pan

Publication type:

Article

Hyperactivation of PARP Triggers Nonhomologous End-Joining in Repair-Deficient Mouse Fibroblasts.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049301

By:

Gassman, Natalie R.;
Stefanick, Donna F.;
Kedar, Padmini S.;
Horton, Julie K.;
Wilson, Samuel H.

Publication type:

Article

ReFlexIn: A Flexible Receptor Protein-Ligand Docking Scheme Evaluated on HIV-1 Protease.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0048008

By:

Leis, Simon;
Zacharias, Martin

Publication type:

Article

FunFOLDQA: A Quality Assessment Tool for Protein-Ligand Binding Site Residue Predictions.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0038219

By:

Roche, Daniel B.;
Buenavista, Maria T.;
McGuffin, Liam J.

Publication type:

Article

Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036688

By:

Swapna, Lakshmipuram Seshadri;
Srikeerthana, Kuchi;
Srinivasan, Narayanaswamy

Publication type:

Article

Ligand Binding Study of Human PEBP1/RKIP: Interaction with Nucleotides and Raf-1 Peptides Evidenced by NMR and Mass Spectrometry.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0036187

By:

Tavel, Laurette;
Jaquillard, Lucie;
Karsisiotis, Andreas I.;
Saab, Fabienne;
Jouvensal, Laurence;
Brans, Alain;
Delmas, Agnès F.;
Schoentgen, Françoise;
Cadene, Martine;
Damblon, Christian

Publication type:

Article

Insights from Modeling the 3D Structure of New Delhi Metallo-β-Lactamse and Its Binding Interactions with Antibiotic Drugs.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018414

By:

Jing-Fang Wang;
Kuo-Chen Chou

Publication type:

Article

Cheminformatics-Based Drug Design Approach for Identification of Inhibitors Targeting the Characteristic Residues of MMP-13 Hemopexin Domain.

Published in:

PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012494

By:

Kothapalli, Roopa;
Khan, Asif M.;
Gopalsamy, Anupriya;
Yap Seng Chong;
Annamalai, Loganath

Publication type:

Article

Dkk1 Stabilizes Wnt Co-Receptor LRP6: Implication for Wnt Ligand-Induced LRP6 Down-Regulation.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011014

By:

Yonghe Li;
Wenyan Lu;
King, Taj D.;
Chia-Chen Liu;
Bijur, Gautam N.;
Guojun Bu

Publication type:

Article

Investigation of Atomic Level Patterns in Protein -- Small Ligand Interactions.

Published in:

PLoS ONE, 2009, v. 4, n. 2, p. 1, doi. 10.1371/journal.pone.0004473

By:

Ke Chen;
Kurgan, Lukasz

Publication type:

Article

A Molecular Basis for Agonist and Antagonist Actions at GABA<sub>C</sub> Receptors.

Published in:

Chemical Biology & Drug Design, 2008, v. 71, n. 4, p. 306, doi. 10.1111/j.1747-0285.2008.00642.x

By:

Abdel-Halim, Heba;
Hanrahan, Jane R.;
Hibbs, David E.;
Johnston, Graham A. R.;
Chebib, Mary

Publication type:

Article

Factor Analysis Scales of Generalized Amino Acid Information as Applied in Predicting Interactions between the Human Amphiphysin-1 SH3 Domains and Their Peptide Ligands.

Published in:

Chemical Biology & Drug Design, 2008, v. 71, n. 4, p. 345, doi. 10.1111/j.1747-0285.2008.00641.x

By:

Liang, Guizhao;
Chen, Guohua;
Niu, Weihuan;
Li, Zhiliang

Publication type:

Article

Mapping Ligand–receptor Interfaces: Approaching the Resolution Limit of Benzophenone-based Photoaffinity Scanning.

Published in:

2008

By:

Wittelsberger, Angela;
Mierke, Dale F.;
Rosenblatt, Michael

Publication type:

Letter

Analysis of Crystal Structures of LXRβ in Relation to Plasticity of the Ligand-Binding Domain upon Ligand Binding.

Published in:

Chemical Biology & Drug Design, 2008, v. 71, n. 2, p. 140, doi. 10.1111/j.1747-0285.2007.00620.x

By:

Malini, Nagulapalli;
Rajesh, Hariharan;
Berwal, Pooja;
Phukan, Samiron;
Balaji, Vittukudi Narayanaiyengar

Publication type:

Article

Enhancement of enzyme efficiency and stability by incorporation of unnatural amino acid residues in a targeted functional site.

Published in:

FASEB Journal, 2007, v. 21, n. 6, p. A1012

By:

Hegazy, Usama M.;
Mannervik, Bengt

Publication type:

Article