Works matching IS 26740702 AND DT 2024

Results: 54

Is there room in epilepsy for the claustrum?

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1385112

By:

Watson, Glenn D. R.;
Meletti, Stefano;
Mahavadi, Anil K.;
Besson, Pierre;
Bandt, S. Kathleen;
Smith, Jared B.

Publication type:

Article

Intein-mediated thyroid hormone biosensors: towards controlled delivery of hormone therapy.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1270071

By:

Martí-Baena, Quim;
Pascuet-Fontanet, Andreu;
Berjaga-Buisan, Tomas;
Caravaca-Rodríguez, Miriam;
Puig-Costa-Jussà, Jaume;
Sanchez-Mejias, Avencia;
Ivančić, Dimitrije;
Mogas-Díez, Sira;
Güell, Marc;
Macia, Javier

Publication type:

Article

Crosstalking with dendritic cells: a path to engineer advanced T Cell immunotherapy.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1372995

By:

Schafer, Sogand;
Kaige Chen;
Leyuan Ma

Publication type:

Article

A review of mathematical modeling of bone remodeling from a systems biology perspective.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1368555

By:

Cook, Carley V.;
Lighty, Ariel M.;
Smith, Brenda J.;
Versypt, Ashlee N. Ford

Publication type:

Article

Forecasting SARS-CoV-2 spike protein evolution from small data by deep learning and regression.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1284668

By:

King, Samuel;
Chen, Xinyi E.;
Ng, Sarah W. S.;
Rostin, Kimia;
Hahn, Samuel V.;
Roberts, Tylo;
Schwab, Janella C.;
Sekhon, Parneet;
Kagieva, Madina;
Reilly, Taylor;
Ruo Chen Qi;
Salman, Paarsa;
Hong, Ryan J.;
Ma, Eric J.;
Hallam, Steven J.

Publication type:

Article

Elucidating a genomic signature associated with behavioral and executive function after moderate to severe pediatric TBI: a systems biology informed approach.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1293265

By:

Kurowski, Brad G.;
Treble-Barna, Amery;
Pilipenko, Valentina;
Martin, Lisa J.;
Jegga, Anil G.;
Miley, Aimee E.;
Nanhua Zhang;
Fabio, Anthony;
Chima, Ranjit S.;
Adlam, Anna-Lynne R.;
Kaufman, Kenneth;
Bell, Michael J.;
Beers, Sue R.;
Wisniewski, Stephen R.;
Wade, Shari L.

Publication type:

Article

Context-aware knowledge selection and reliable model recommendation with ACCORDION.

Published in:

2024

By:

Ahmed, Yasmine;
Telmer, Cheryl A.;
Gaoxiang Zhou;
Miskov-Zivanov, Natasa

Publication type:

Product Review

In silico biomarker analysis of the adverse effects of perfluorooctane sulfonate (PFOS) exposure on the metabolic physiology of embryo-larval zebrafish.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1367562

By:

Nolen, Rayna M.;
Petersen, Lene H.;
Kaiser, Karl;
Quigg, Antonietta;
Hala, David

Publication type:

Article

Mathematical modeling of temperature-induced circadian rhythms.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1256398

By:

Lingjun Lu;
Yannuo Li;
Schloss, Rene;
Androulakis, Ioannis P.

Publication type:

Article

A robust ensemble feature selection approach to prioritize genes associated with survival outcome in high-dimensional gene expression data.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1355595

By:

Phi Le;
Xingyue Gong;
Leah Ung;
Hai Yang;
Keenan, Bridget P.;
Li Zhang;
Tao He

Publication type:

Article

Calcium oscillations in HEK293 cells lacking SOCE suggest the existence of a balanced regulation of IP<sub>3</sub> production and degradation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1343006

By:

Octors, Clara;
Yoast, Ryan E.;
Emrich, Scott M.;
Trebak, Mohamed;
Sneyd, James

Publication type:

Article

Computational insights in cell physiology.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1335885

By:

Dupont, Geneviève;
Gonze, Didier

Publication type:

Article

Integrating inverse reinforcement learning into data-driven mechanistic computational models: a novel paradigm to decode cancer cell heterogeneity.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1333760

By:

Kinnunen, Patrick C.;
Ho, Kenneth K. Y.;
Srivastava, Siddhartha;
Chengyang Huang;
Wanggang Shen;
Garikipati, Krishna;
Luker, Gary D.;
Banovic, Nikola;
Xun Huan;
Linderman, Jennifer J.;
Luker, Kathryn E.

Publication type:

Article

Advancing precision medicine therapeutics for Parkinson's utilizing a shared quantitative systems pharmacology model and framework.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1351555

By:

Denaro, Christopher;
Stephenson, Diane;
Müller, Martijn L. T. M.;
Piccoli, Benedetto;
Azer, Karim

Publication type:

Article

Uncertainty quantified discovery of chemical reaction systems via Bayesian scientific machine learning.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1338518

By:

Nieves, Emily;
Dandekar, Raj;
Rackauckas, Chris

Publication type:

Article

Assessing electrogenetic activation via a network model of biological signal propagation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1291293

By:

Chun, Kayla;
VanArsdale, Eric;
May, Elebeoba;
Payne, Gregory F.;
Bentley, William E.

Publication type:

Article

Expanding our thought horizons in systems biology and medicine.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1385458

By:

Lovejoy, Jennifer C.

Publication type:

Article

A workflow for the creation of regulatory networks integrating miRNAs and lncRNAs associated with exposure to ionizing radiation using open source data and tools.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2022.928159

By:

Freiesleben, Sherry;
Unverricht-Yeboah, Marcus;
Gütebier, Lea;
Waltemath, Dagmar;
Kriehuber, Ralf;
Wolkenhauer, Olaf

Publication type:

Article

From Epidemic to Pandemic Modelling.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2022.861562

By:

Connolly, Shannon;
Gilbert, David;
Heiner, Monika

Publication type:

Article

Pareto task inference analysis reveals cellular trade-offs in diffuse large B-Cell lymphoma transcriptomic data.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1346076

By:

Blais, Jonatan;
Jeukens, Julie

Publication type:

Article

Computational design of custom therapeutic cells to correct failing human cardiomyocytes.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2023.1102467

By:

Tieu, Andrew;
Phillips, Katherine G.;
Costa, Kevin D.;
Mayourian, Joshua

Publication type:

Article

BioModels' Model of the Year 2023.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1363884

By:

Malik Sheriff, Rahuman S.;
Hiroki Asari;
Hermjakob, Henning;
Huber, Wolfgang;
Quail, Thomas;
Santos, Silvia D. M.;
Smith, Amber M.;
Uhlmann, Virginie

Publication type:

Article

Computational inference of chemokine-mediated roles for the vagus nerve in modulating intra- and inter-tissue inflammation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1266279

By:

Shah, Ashti M.;
Zamora, Ruben;
Barclay, Derek;
Jinling Yin;
El-Dehaibi, Fayten;
Addorisio, Meghan;
Tsaava, Tea;
Tynan, Aisling;
Tracey, Kevin;
Chavan, Sangeeta S.;
Vodovotz, Yoram

Publication type:

Article

Editorial: Combining mechanistic modeling with machine learning to study multiscale biological processes.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1367549

By:

Peirce-Cottler, Shayn;
Vodovotz, Yoram

Publication type:

Article

Genome-scale flux balance analysis reveals redox trade-offs in the metabolism of the thermoacidophile Methylacidiphilum fumariolicum under auto-, hetero-and methanotrophic conditions.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1291612

By:

Saldivar, Alexis;
Ruiz-Ruiz, Patricia;
Revah, Sergio;
Zuñiga, Cristal

Publication type:

Article

Maintenance of PKMζ-modulated synaptic efficacies despite protein turnover.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2022.933938

By:

Aslam, Naveed

Publication type:

Article

Batch correction and harmonization of -Omics datasets with a tunable median polish of ratio.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2023.1092341

By:

Dammer, Eric B.;
Seyfried, Nicholas T.;
Johnson, Erik C. B.

Publication type:

Article

A framework for multi-scale intervention modeling: virtual cohorts, virtual clinical trials, and model-to-model comparisons.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2023.1283341

By:

Michael, Christian T.;
Almohri, Sayed Ahmad;
Linderman, Jennifer J.;
Kirschner, Denise E.

Publication type:

Article

A framework for multi-scale intervention modeling: virtual cohorts, virtual clinical trials, and model-to-model comparisons.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2023.1283341

By:

Michael, Christian T.;
Almohri, Sayed Ahmad;
Linderman, Jennifer J.;
Kirschner, Denise E.

Publication type:

Article

Determining the role of advection in patterning by bone morphogenetic proteins through neural network model-based acceleration of a 3D finite element model of the zebrafish embryo.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2022.983372

By:

Linlin Li;
Xu Wang;
Junyi Chai;
Xiaoqian Wang;
Buganza-Tepole, Adrian;
Umulis, David M.

Publication type:

Article

Metabolic perturbation studies using a Nash Equilibrium model of liver machine perfusion: modeling oxidative stress and effect of glutathione supplementation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2023.1260315

By:

Lucia, Angelo;
Uygun, Korkut

Publication type:

Article

Calcium oscillations in HEK293 cells lacking SOCE suggest the existence of a balanced regulation of IP<sub>3</sub> production and degradation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1343006

By:

Octors, Clara;
Yoast, Ryan E.;
Emrich, Scott M.;
Trebak, Mohamed;
Sneyd, James

Publication type:

Article

Immune disease dialogue of chemokine-based cell communications as revealed by single-cell RNA sequencing meta-analysis.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1466368

By:

Rahman, Mouly F.;
Kurlovs, Andre H.;
Vodnala, Munender;
Meibalan, Elamaran;
Means, Terry K.;
Nouri, Nima;
de Rinaldis, Emanuele;
Savova, Virginia

Publication type:

Article

An exploration of testing genetic associations using goodness-of-fit statistics based on deep ReLU neural networks.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1460369

By:

Shen, Xiaoxi;
Wang, Xiaoming

Publication type:

Article

Interplay of circular RNAs in gastric cancer - a systematic review.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1497510

By:

Guha, Dipanjan;
Mondal, Jit;
Nandy, Anirban;
Biswas, Sima;
Bagchi, Angshuman

Publication type:

Article

Bridging complexity through integrative systems neuroscience.

Published in:

2024

By:

Chang, Eric H.

Publication type:

Editorial

Spectral expansion methods for prediction uncertainty quantification in systems biology.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1419809

By:

Deneer, Anna;
Molenaar, Jaap;
Fleck, Christian

Publication type:

Article

Intertwined roles for GDF-15, HMGB1, and MIG/CXCL9 in Pediatric Acute Liver Failure.

Published in:

Frontiers in Systems Biology, 2024, p. 01, doi. 10.3389/fsysb.2024.1470000

By:

Zamora, Ruben;
Yin, Jinling;
Barclay, Derek;
Squires, James E.;
Vodovotz, Yoram

Publication type:

Article

Spectral expansion methods for prediction uncertainty quantification in systems biology.

Published in:

Frontiers in Systems Biology, 2024, p. 01

By:

Deneer, Anna;
Molenaar, Jaap;
Fleck, Christian

Publication type:

Article

Accessible Type 2 diabetes medication through stable expression of Exendin-4 in Saccharomyces cerevisiae.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1283371

By:

Balius, Gia;
Imani, Kiana;
Petroff, Zoë;
Beer, Elizabeth;
Brasileiro Feitosa, Thiago;
Mccall, Nathan;
Paule, Lauren;
Neo Yixuan Peng;
Shen, Joanne;
Singh, Vidhata;
Strand, Cambell;
Zau, Jonathan;
Bernick, D. L.

Publication type:

Article

Building virtual patients using simulation-based inference.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1444912

By:

Paul, Nathalie;
Karamitsou, Venetia;
Giegerich, Clemens;
Sadeghi, Afshin;
Lücke, Moritz;
Wagenhuber, Britta;
Kister, Alexander;
Rehberg, Markus

Publication type:

Article

A multi-scale semi-mechanistic CK/PD model for CAR T-cell therapy.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1380018

By:

Minucci, Sarah;
Gruver, Scott;
Subramanian, Kalyanasundaram;
Renardy, Marissa

Publication type:

Article

Modeling uncertainty: the impact of noise in T cell differentiation.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1412931

By:

Martínez-Méndez, David;
Villarreal, Carlos;
Huerta, Leonor

Publication type:

Article

First evidence for temperature's influence on the enrichment, assembly, and activity of polyhydroxyalkanoate-synthesizing mixed microbial communities.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1375472

By:

Trego, Anna;
Palmeiro-Sánchez, Tania;
Graham, Alison;
Ijaz, Umer Zeeshan;
O'Flaherty, Vincent

Publication type:

Article

The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1407994

By:

Noordijk, Ben;
Gomez, Monica L. Garcia;
ten Tusscher, Kirsten H. W. J.;
de Ridder, Dick;
van Dijk, Aalt D. J.;
Smith, Robert W.

Publication type:

Article

Transporter annotations are holding up progress in metabolic modeling.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1394084

By:

Casey, John;
Bennion, Brian;
D’haeseleer, Patrik;
Kimbrel, Jeffrey;
Marschmann, Gianna;
Navid, Ali

Publication type:

Article

Life's building blocks: the modular path to multiscale complexity.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1417800

By:

Huitzil, Saúl;
Huepe, Cristián

Publication type:

Article

Coupling quantitative systems pharmacology modelling to machine learning and artificial intelligence for drug development: its pAIns and gAIns.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1380685

By:

Folguera-Blasco, Núria;
Boshier, Florencia A. T.;
Uatay, Aydar;
Pichardo-Almarza, Cesar;
Lai, Massimo;
Biasetti, Jacopo;
Dearden, Richard;
Gibbs, Megan;
Kimko, Holly

Publication type:

Article

Predicting chronic responses to calcium channel blockade with a virtual population of African Americans with hypertensive chronic kidney disease.

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1327357

By:

Clemmer, John S.;
Pruett, W. Andrew;
Hester, Robert L.

Publication type:

Article

Specialty grand challenge: how can we use integrative approaches to understand microbial community dynamics?

Published in:

Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1432791

By:

Ijaz, Umer Zeeshan;
Ameer, Aqsa;
Saleem, Farrukh;
Gul, Farzana;
Keating, Ciara;
Javed, Sundus

Publication type:

Article