Works matching IS 26740702 AND DT 2022 AND VI 2

Results: 45

Teaching computational systems biology with an eye on quantitative systems pharmacology at the undergraduate level: Why do it, who would take it, and what should we teach?

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1044281

By:

Androulakis, Ioannis P.

Publication type:

Article

Evaluating the robustness of connectivity methods to noise for in silico drug repurposing studies.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 01, doi. 10.3389/fsysb.2022.1050730

By:

Tham, Nevin;
Langley, Sarah R.

Publication type:

Article

A brief account on enzyme mining using metagenomic approach.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 01, doi. 10.3389/fsysb.2022.1046230

By:

Patel, Tithi;
Chaudhari, Hiral G.;
Prajapati, Vimalkumar;
Patel, Swati;
Mehta, Vaibhavkumar;
Soni, Niti

Publication type:

Article

Genome-wide association studies of viral infections--A short guide to a successful experimental and statistical analysis.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1005758

By:

Butković, Anamarija;
Elena, Santiago F.

Publication type:

Article

Evaluation of intracoronary hemodynamics identifies perturbations in vorticity.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.930396

By:

Vardhan, Madhurima;
Gounley, John;
Chen, S. James;
Nair, Priya;
Wei Wei;
Hegele, Luiz;
Kusner, Jonathan;
Kahn, Andrew M.;
Frakes, David;
Leopold, Jane A.;
Randles, Amanda

Publication type:

Article

Innovations in integrating machine learning and agent-based modeling of biomedical systems.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.959665

By:

Sivakumar, Nikita;
Mura, Cameron;
Peirce, Shayn M.

Publication type:

Article

Comparison of cell type annotation algorithms for revealing immune response of COVID-19.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1026686

By:

Congmin Xu;
Huyun Lu;
Peng Qiu

Publication type:

Article

A new mechanochemical model for apical constriction: Coupling calcium signalling and viscoelasticity.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.962790

By:

Kaouri, Katerina;
Christodoulou, Neophytos;
Chakraborty, Abhishek;
Méndez, Paul E.;
Skourides, Paris;
Ruiz-Baier, Ricardo

Publication type:

Article

R400: A novel gene signature for dose prediction in radiation exposure studies in humans.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1022486

By:

St. Peter, Frederick;
Vadrev, Srinivas Mukund;
Soufan, Othman

Publication type:

Article

Methods of quantifying interactions among populations using Lotka-Volterra models.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1021897

By:

Davis, Jacob D.;
Olivença, Daniel V.;
Brown, Sam P.;
Voit, Eberhard O.

Publication type:

Article

Dual continuum upscaling of liver lobule flow and metabolism to the full organ scale.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.926923

By:

Coombe, Dennis;
Rezania, Vahid;
Tuszynski, Jack Adam

Publication type:

Article

Distal and proximal control of rhythmic gene transcription.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1026424

By:

Román-Figueroa, Abraham;
Tenorio-Hernández, Luis;
Furlan-Magaril, Mayra

Publication type:

Article

Modelling oncolytic virus diffusion in collagen-dense tumours.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.903512

By:

Pooladvand, Pantea;
Kim, Peter S.

Publication type:

Article

Questions, data and models underpinning metabolic engineering.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.998048

By:

van Rosmalen, Rik P.;
dos Santos, Vitor A. P. Martins;
Suarez-Diez, Maria

Publication type:

Article

A workflow for the creation of regulatory networks integrating miRNAs and lncRNAs associated with exposure to ionizing radiation using open source data and tools.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.928159

By:

Freiesleben, Sherry;
Unverricht-Yeboah, Marcus;
Gütebier, Lea;
Waltemath, Dagmar;
Kriehuber, Ralf;
Wolkenhauer, Olaf

Publication type:

Article

A Mathematical Model for On-Target Off-Tumor Effect of CAR-T Cells on Gliomas.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.923085

By:

Silva Santurio, Daniela;
Rodrigues Carvalho Barros, Luciana

Publication type:

Article

The role of mathematical models in designing mechanopharmacological therapies for asthma.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.929426

By:

Irons, Linda;
Brook, Bindi S.

Publication type:

Article

Determining the role of advection in patterning by bone morphogenetic proteins through neural network model-based acceleration of a 3D finite element model of the zebrafish embryo.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.983372

By:

Linlin Li;
Xu Wang;
Junyi Chai;
Xiaoqian Wang;
Buganza-Tepole, Adrian;
Umulis, David M.

Publication type:

Article

Decrypting the complexity of the human malaria parasite biology through systems biology approaches.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.940321

By:

Chahine, Zeinab;
Le Roch, Karine G.

Publication type:

Article

Old Circular RNAs, New Habits: Repurposing Noncoding RNAs in Parasitic Amebozoa.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.951295

By:

González-Blanco, Gretter;
Jáuregui-Wade, José Manuel;
Ruiz-Luis, Tea Anastasia;
Saito-Nakano, Yumiko;
Valdés, Jesús

Publication type:

Article

Explicit Calculation of Structural Commutation Relations for Stochastic and Dynamical Graph Grammar Rule Operators in Biological Morphodynamics.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.898858

By:

Mjolsness, Eric

Publication type:

Article

Perspective: Systems biology beyond biology.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.987135

By:

Voit, Eberhard O.

Publication type:

Article

Modelling mechanically dominated vasculature development.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.901210

By:

Walker, Benjamin J.;
Dawes, Adriana T.

Publication type:

Article

Research-driven education: An introductory course to systems and synthetic biology.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.981800

By:

Smith, Robert W.;
Garcia-Morales, Luis;
dos Santos, Vitor A. P. Martins;
Saccenti, Edoardo

Publication type:

Article

From Epidemic to Pandemic Modelling.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.861562

By:

Connolly, Shannon;
Gilbert, David;
Heiner, Monika

Publication type:

Article

A Mechanistic Cellular Atlas of the Rheumatic Joint.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.925791

By:

Zerrouk, Naouel;
Aghakhani, Sahar;
Singh, Vidisha;
Augé, Franck;
Niarakis, Anna

Publication type:

Article

Metataxonomic insights into the microbial ecology of farm-scale hay, grass or legume, and corn silage produced with and without inoculants.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.955611

By:

Ouamba, Alexandre J. Kennang;
Gagnon, Mérilie;
Varin, Thibault;
Chouinard, P. Yvan;
LaPointe, Gisèle;
Roy, Denis

Publication type:

Article

Mathematical Model of the Immunopathological Progression of Tuberculosis.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.912974

By:

Flores-Garza, Eliezer;
Zetter, Mario A.;
Hernández-Pando, Rogelio;
Domínguez-Hüttinger, Elisa

Publication type:

Article

A complete guide to human microbiomes: Body niches, transmission, development, dysbiosis, and restoration.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.951403

By:

Reynoso-García, Jelissa;
Miranda-Santiago, Angel E.;
Meléndez-Vázquez, Natalie M.;
Acosta-Pagán, Kimil;
Sánchez-Rosado, Mitchell;
Díaz-Rivera, Jennifer;
Rosado-Quiñones, Angélica M.;
Acevedo-Márquez, Luis;
Cruz-Roldán, Lorna;
Tosado-Rodríguez, Eduardo L.;
Figueroa-Gispert, María Del Mar;
Godoy-Vitorino, Filipa

Publication type:

Article

Leveraging Systems Immunology to Optimize Diagnosis and Treatment of Inborn Errors of Immunity.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.910243

By:

Mauracher, Andrea A.;
Henrickson, Sarah E.

Publication type:

Article

Standardization of Human Metabolic Stoichiometric Models: Challenges and Directions.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.899980

By:

Pantziri, Marilena D. A.;
Klapa, Maria I.

Publication type:

Article

Robust Behrens-Fisher Statistic Based on Trimmed Means and Its Usefulness in Analyzing High-Throughput Data.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.877601

By:

Guolian Kang;
Mirzaei, Sedigheh S.;
Hui Zhang;
Liang Zhu;
Rai, Shesh N.;
Srivastava, Deo Kumar

Publication type:

Article

Drug Development Digital Twins for Drug Discovery, Testing and Repurposing: A Schema for Requirements and Development.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.928387

By:

An, Gary;
Cockrell, Chase

Publication type:

Article

Push or Pull? Cell Proliferation and Migration During Wound Healing.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.876075

By:

Zanca, Adriana;
Flegg, Jennifer A.;
Osborne, James M.

Publication type:

Article

Data Availability of Open T-Cell Receptor Repertoire Data, a Systematic Assessment.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.918792

By:

Yu-Ning Huang;
Patel, Naresh Amrat;
Mehta, Jay Himanshu;
Ginjala, Srishti;
Brodin, Petter;
Gray, Clive M.;
Patel, Yesha M.;
Cowell, Lindsay G.;
Burkhardt, Amanda M.;
Mangul, Serghei

Publication type:

Article

Modelling the Effects of Medium-Chain Triglycerides on Cerebral Ketone Body Metabolism.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.907957

By:

Espina, Abigail;
Mendoza, Eduardo;
Lao, Angelyn

Publication type:

Article

Mathematical Modelling of Pseudomonas aeruginosa L-forms Reveals Complex Interplay Between Host Defence Mechanisms and Putative Treatments.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.899990

By:

Spalding, Chloe;
Shirgill, Sandeep;
Taylor, Emma;
Krachler, Anne-Marie;
Jabbari, Sara

Publication type:

Article

From Seeing to Simulating: A Survey of Imaging Techniques and Spatially-Resolved Data for Developing Multiscale Computational Models of Liver Regeneration.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.917191

By:

Verma, Aalap;
Manchel, Alexandra;
Melunis, Justin;
Hengstler, Jan G.;
Vadigepalli, Rajanikanth

Publication type:

Article

Multi-Omics Integrative Analysis Coupled to Control Theory and Computational Simulation of a Genome-Scale metabolic Model Reveal Controlling Biological Switches in Human Astrocytes Under Palmitic Acid-Induced Lipotoxicity.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.896265

By:

Angarita-Rodríguez, Andrea;
Mendoza-Mejía, Nicolás;
Gonzalez, Janneth;
Felipe Aristizabal, Andrés;
Hidalgo-Lanussa, Oscar;
Rubio-Mesa, Juan J.;
Barreto, George E.;
Pinzon, Andres

Publication type:

Article

Specialty Grand Challenge: What it Will Take to Cross the Valley of Death: Translational Systems Biology, "True" Precision Medicine, Medical Digital Twins, Artificial Intelligence and In Silico Clinical Trials.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.901159

By:

An, Gary

Publication type:

Article

A Brief Review on Deep Learning Applications in Genomic Studies.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.877717

By:

Xiaoxi Shen;
Chang Jiang;
Yalu Wen;
Chenxi Li;
Qing Lu

Publication type:

Article

A Metataxonomic Analysis of Maple Sap Microbial Communities Reveals New Insights Into Maple Syrup Complexity.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.893007

By:

Quang N'guyen, Guillaume;
Roblet, Cyril;
Lagacé, Luc;
Filteau, Marie

Publication type:

Article

Multi-Scale Modeling Recapitulates the Effect of Genetic Alterations Associated With Diffuse Large B-Cell Lymphoma in the Germinal Center Dynamics.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.864690

By:

Merino Tejero, Elena;
Mao, Qirong;
Lashgari, Danial;
García-Valiente, Rodrigo;
Robert, Philippe A.;
Meyer-Hermann, Michael;
Martínez, María Rodríguez;
Guikema, Jeroen E. J.;
Hoefsloot, Huub H. C.;
van Kampen, Antoine H. C.

Publication type:

Article

Interactome of SARS-CoV-2 Modulated Host Proteins With Computationally Predicted PPIs: Insights From Translational Systems Biology Studies.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.815237

By:

Karunakaran, Kalyani B.;
Balakrishnan, N.;
Ganapathiraju, Madhavi K.

Publication type:

Article

Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility.

Published in:

Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.822606

By:

Karr, Jonathan;
Malik-Sheriff, Rahuman S.;
Osborne, James;
Gonzalez-Parra, Gilberto;
Forgoston, Eric;
Bowness, Ruth;
Liu, Yaling;
Thompson, Robin;
Garira, Winston;
Barhak, Jacob;
Rice, John;
Torres, Marcella;
Dobrovolny, Hana M.;
Tang, Tingting;
Waites, William;
Glazier, James A.;
Faeder, James R.;
Kulesza, Alexander

Publication type:

Article