Works matching IS 25246372 AND DT 2025 AND VI 20 AND IP 1

Results: 76

Contrasting stability of fungal and bacterial communities during long-term decomposition of fungal necromass in Arctic tundra.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00730-5

By:

Moravcová, Andrea;
Barbi, Florian;
Algora, Camelia;
Tosadori, Gabriele;
Macek, Petr;
Albrechtová, Jana;
Baldrian, Petr;
Kohout, Petr

Publication type:

Article

Warming increases richness and shapes assemblages of eukaryotic parasitic plankton.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00724-3

By:

Rajarajan, Amruta;
Cerbin, Sławek;
Beng, Kingsly C.;
Monaghan, Michael T.;
Wolinska, Justyna

Publication type:

Article

Salinization alters microbial methane cycling in freshwater sediments.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00739-w

By:

Selak, Lorena;
Meier, Dimitri V.;
Marinović, Maja;
Čačković, Andrea;
Kajan, Katarina;
Pjevac, Petra;
Orlić, Sandi

Publication type:

Article

Symbiotic Symbiodiniaceae mediate coral-associated bacterial communities along a natural thermal gradient.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00733-2

By:

Yang, Qianxi;
Zhang, Han;
Qiu, Jian-Wen;
Huang, Dingyong;
Zhou, Xijie;
Zheng, Xinqing

Publication type:

Article

Comparative metagenomics indicates metabolic niche differentiation of benthic and planktonic Woeseiaceae.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00732-3

By:

Viver, Tomeu;
Knittel, Katrin;
Amann, Rudolf;
Orellana, Luis H.

Publication type:

Article

Composition and rhythmic variations in the microbiome of Southwestern Atlantic corals.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00725-2

By:

Seiblitz, I. G. L.;
Capel, K. C. C.;
Oliveira, R. R.;
Zilberberg, C.;
Cordeiro, C. A. M. M.;
Francini, C. L. B.;
Zanotti, A. A.;
Ciotti, A. M.;
Kitahara, M. V.

Publication type:

Article

Antarctic ice-free terrestrial microbial functional redundancy in core ecological functions and microhabitat-specific microbial taxa and adaptive strategy.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00735-0

By:

Zhang, Mimi;
Xiao, Yao;
Song, Qianqian;
Li, Zhiyong

Publication type:

Article

Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00729-y

By:

Kampouris, Ioannis D.;
Kuhl-Nagel, Theresa;
Behr, Jan Helge;
Sommermann, Loreen;
Babin, Doreen;
Francioli, Davide;
Zrenner, Rita;
Kublik, Susanne;
Schloter, Michael;
Ludewig, Uwe;
Smalla, Kornelia;
Neumann, Günter;
Grosch, Rita;
Geistlinger, Joerg

Publication type:

Article

Interrow cover crops in a semi-arid vineyard increase plant beneficial functional potential of the soil microbiome, both in vine rows and interrows, a benefit that increases with cover crop duration.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00726-1

By:

Rocha, Fernando Igne;
Rodriguez-Ramos, Jean Carlos;
Fernando, Margaret;
Hale, Lauren

Publication type:

Article

Investigation on the aerobic methanotrophic community and the dominant taxon Methylomarinum in seagrass ecosystem.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00736-z

By:

Liang, Tongyin;
Dong, Junde;
Zhou, Weiguo;
Huang, Xiaofang;
Liu, Hongbin;
Zhang, Yuhang;
Yang, Qingsong;
Ahmad, Manzoor;
Chen, Luxiang;
Ling, Juan

Publication type:

Article

Defining the cultured and uncultured bacterial fractions in Cannabis seeds.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00731-4

By:

Lobato, Carolina;
Abdelfattah, Ahmed;
Berg, Gabriele;
Cernava, Tomislav

Publication type:

Article

New groups of highly divergent proteins in families as old as cellular life with important biological functions in the ocean.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00697-3

By:

Sussfeld, Duncan;
Lannes, Romain;
Corel, Eduardo;
Bernard, Guillaume;
Martin, Pierre;
Bapteste, Eric;
Pelletier, Eric;
Lopez, Philippe

Publication type:

Article

Uncovering functional deterioration in the rhizosphere microbiome associated with post-green revolution wheat cultivars.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00723-4

By:

Smith, Monique E.;
Kavamura, Vanessa N.;
Hughes, David;
Mendes, Rodrigo;
Lund, George;
Clark, Ian;
Mauchline, Tim H.

Publication type:

Article

Severe drought impacts tree traits and associated soil microbial communities of clonal oaks.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00720-7

By:

Quiroga-González, Camilo;
Prada-Salcedo, Luis Daniel;
Buscot, François;
Tarkka, Mika;
Herrmann, Sylvie;
Bouffaud, Marie-Lara;
Goldmann, Kezia

Publication type:

Article

Identification of shared viral sequences in peat moss metagenomes reveals elements of a possible Sphagnum core virome.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00719-0

By:

Denison, Elizabeth R.;
Pound, Helena L.;
Gann, Eric R.;
Gilbert, Naomi E.;
Weston, David J.;
Pelletier, Dale A.;
Wilhelm, Steven W.

Publication type:

Article

Mosses as extraordinary reservoir of microbial diversity: a comparative analysing of co-occurring 'plant-moss twins' in natural alpine ecosystem.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00728-z

By:

Ramakrishnan, Dinesh Kumar;
Wassermann, Birgit;
Berg, Christian;
Abdelfattah, Ahmed;
Berg, Gabriele

Publication type:

Article

Pigeon pea-mediated soil microbial shifts improve agroecosystem multifunctionality in long-term maize–palisade grass intercropping.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00727-0

By:

Khoiri, Ahmad Nuruddin;
Costa, Nídia Raquel;
Crusciol, Carlos Alexandre Costa;
Pariz, Cristiano Magalhães;
Costa, Ciniro;
Calonego, Juliano Carlos;
de Castilhos, André Michel;
de Souza, Daniel Martins;
de Lima Meirelles, Paulo Roberto;
Cru, Igor Vilela;
Moretti, Luiz Gustavo;
Bossolani, João William;
Kuramae, Eiko Eurya

Publication type:

Article

Metabarcoding insights into microbial drivers of flavor development and quality stability in traditional Chinese red pepper sauce: impacts of varietal selection and solar/shade fermentation.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00717-2

By:

Gong, Xuefeng;
Xu, Yi;
Hou, Sihao;
Li, Hong;
Chen, Xin;
Song, Zhanfeng

Publication type:

Article

Impact of fluoroquinolone and heavy metal pollution on antibiotic resistance maintenance in aquatic ecosystems.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00722-5

By:

Dehon, Emilie;
Vrchovecká, Stanislava;
Mathieu, Alban;
Favre-Bonté, Sabine;
Wacławek, Stanisław;
Droit, Arnaud;
Vogel, Timothy M.;
Sanchez-Cid, Concepcion

Publication type:

Article

Effect of applying oyster shell powder on soil properties and microbial diversity in the acidified soils of pomelo garden.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00721-6

By:

Li, Yuanyuan;
Zhang, Qiong;
Zhu, Lixia;
Yang, Jing;
Wei, Jingjing;
Li, Yunhe;
Chen, Xiaohuang

Publication type:

Article

Rain-shelter cultivation promotes grapevine health by altering phyllosphere microecology in rainy areas.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00708-3

By:

He, Tao;
Moukarzel, Romy;
Fu, Mingxin;
Yang, Meng;
Du, Ronghui;
Zhao, Jing;
Liu, Jinyu;
Wu, Jiaqing;
Deng, Weiping;
Zhu, Yifan;
Yang, Min;
Zhu, Shusheng;
Du, Fei

Publication type:

Article

Plant microbiome responses to bioinoculants and volatiles.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00715-4

By:

Olimi, Expedito;
Duller, Martina;
Stangl, Martina;
Bickel, Samuel;
Battisti, Angelika;
Kusstatscher, Peter;
Wicaksono, Wisnu Adi;
Abdelfattah, Ahmed;
Cernava, Tomislav;
Berg, Gabriele

Publication type:

Article

Distinct microbial communities drive methane cycling in below- and above-ground compartments of tropical cloud forests growing on peat.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00718-1

By:

Kazmi, Fahad Ali;
Mander, Ülo;
Khanongnuch, Ramita;
Öpik, Maarja;
Ranniku, Reti;
Soosaar, Kaido;
Masta, Mohit;
Tenhovirta, Salla A. M.;
Kasak, Kuno;
Ah-Peng, Claudine;
Espenberg, Mikk

Publication type:

Article

Metabarcoding with Illumina and Oxford Nanopore Technologies provides complementary insights into tree seed mycobiota.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00712-7

By:

Mittelstrass, Jana;
Heinzelmann, Renate;
Eschen, René;
Hartmann, Martin;
Kupper, Quirin;
Schneider, Salome;
Prospero, Simone;
Franić, Iva

Publication type:

Article

Identifying rhizosphere bacteria and potential mechanisms linked to compost suppressiveness towards Fusarium oxysporum.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00710-9

By:

Amutuhaire, Hildah;
Faigenboim-Doron, Adi;
Kraut-Cohen, Judith;
Friedman, Jonathan;
Cytryn, Eddie

Publication type:

Article

Spatial scale modulates stochastic and deterministic influence on biogeography of photosynthetic biofilms in Southeast Asian hot springs.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00711-8

By:

George, Christaline;
Kortheerakul, Chananwat;
Khunthong, Nitthiya;
Sharma, Chitrabhanu;
Luo, Danli;
Chan, Kok-Gan;
Daroch, Maurycy;
Hyde, Kevin D.;
Lee, Patrick K. H.;
Goh, Kian Mau;
Waditee-Sirisattha, Rungaroon;
Pointing, Stephen B.

Publication type:

Article

A comparative study: impact of chemical and biological fungicides on soil bacterial communities.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00713-6

By:

Tagele, Setu Bazie;
Gachomo, Emma W.

Publication type:

Article

Component specific responses of the microbiomes to common chemical stressors in the human food chain.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00700-x

By:

Wasimuddin;
Chiaia-Hernandez, Aurea;
Terrettaz, Céline;
Thoenen, Lisa;
Caggìa, Veronica;
Mateo, Pierre;
Coll-Crespi, Miquel;
Notter, Matheus;
Mukherjee, Mohana;
Chavez-Capilla, Teresa;
Ronchi, Francesca;
Ganal-Vonarburg, Stephanie C.;
Grosjean, Martin;
Bigalke, Moritz;
Spielvogel, Sandra;
Macpherson, Andrew;
Mestrot, Adrien;
Hapfelmeier, Siegfried;
Erb, Matthias;
Schlaeppi, Klaus

Publication type:

Article

Unveiling plasmid diversity and functionality in pristine groundwater.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00703-8

By:

Pérez-Carrascal, Olga María;
Pratama, Akbar Adjie;
Sullivan, Matthew B.;
Küsel, Kirsten

Publication type:

Article

Influence of genotype, nodule position, and edaphic factors on microbial diversity and assembly of pigeonpea (Cajanus cajan) root nodules in Indian soils.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00707-4

By:

Basu, Anirban;
Chalasani, Danteswari;
Sarma, P.V.S.R.N.;
Uikey, Sheetal;
Chenna, Vijaya Ranganatha;
Choudhari, Pushpajeet Lokpal;
Podile, Appa Rao

Publication type:

Article

The unresolved struggle of 16S rRNA amplicon sequencing: a benchmarking analysis of clustering and denoising methods.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00705-6

By:

Fares, Mohamed;
Tharwat, Engy K.;
Cleenwerck, Ilse;
Monsieurs, Pieter;
Van Houdt, Rob;
Vandamme, Peter;
El-Hadidi, Mohamed;
Mysara, Mohamed

Publication type:

Article

Small-scale heterogeneity of soil properties in farmland affected fava beans growth through rhizosphere differential metabolites and microorganisms.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00706-5

By:

Wang, Linbin;
Wu, Yufeng;
Zhao, Zhi-Bo;
Jia, Tingsheng

Publication type:

Article

Jellyfish blooms through the microbial lens: temporal changes, cross-species and Jellyfish-water comparisons.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00714-5

By:

Barak, Noga;
Brekhman, Vera;
Aharonovich, Dikla;
Lotan, Tamar;
Sher, Daniel

Publication type:

Article

Genomic characterisation of novel extremophile lineages from the thalassohaline lake Dziani Dzaha expands the metabolic repertoire of the PVC superphylum.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00699-1

By:

Vigneron, Adrien;
Cloarec, Lilian A.;
Brochier-Armanet, Céline;
Flandrois, Jean Pierre;
Troussellier, Marc;
Bernard, Cécile;
Agogué, Hélène;
Oger, Philippe M.;
Hugoni, Mylène

Publication type:

Article

Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00704-7

By:

Herbert, Josephine;
Thompson, Stanley;
Beckett, Angela H.;
Robson, Samuel C.

Publication type:

Article

Antibiotic type and dose variably affect microbiomes of a disease-resistant Acropora cervicornis genotype.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00709-2

By:

Patton, Sunni;
Silva, Denise P.;
Fuques, Eddie;
Klinges, Grace;
Muller, Erinn M.;
Thurber, Rebecca L. Vega

Publication type:

Article

Diverse lifestyles and adaptive evolution of uncultured UBA5794 actinobacteria, a sister order of "Candidatus actinomarinales".

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00701-w

By:

Huang, Jing;
Zheng, Xiaowei;
Yu, Tao;
Ali, Mohsin;
Wiese, Jutta;
Hu, Songnian;
Huang, Li;
Huang, Ying

Publication type:

Article

Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00687-5

By:

Debnath, Sanjit C.;
Chaput, Dominique L.;
McMurtrie, Jamie;
Bell, Ashley G.;
Temperton, Ben;
Mohan, Chadag V.;
Alam, Md. M.;
Hasan, Neaz A.;
Haque, Mohammad M.;
Bass, David;
Tyler, Charles R.

Publication type:

Article

Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00691-9

By:

Fournier, Paola;
Pellan, Lucile;
Jaswa, Aarti;
Cambon, Marine C.;
Chataigner, Alexandre;
Bonnard, Olivier;
Raynal, Marc;
Debord, Christian;
Poeydebat, Charlotte;
Labarthe, Simon;
Delmotte, François;
This, Patrice;
Vacher, Corinne

Publication type:

Article

Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00691-9

By:

Fournier, Paola;
Pellan, Lucile;
Jaswa, Aarti;
Cambon, Marine C.;
Chataigner, Alexandre;
Bonnard, Olivier;
Raynal, Marc;
Debord, Christian;
Poeydebat, Charlotte;
Labarthe, Simon;
Delmotte, François;
This, Patrice;
Vacher, Corinne

Publication type:

Article

The invisible architects: microbial communities and their transformative role in soil health and global climate changes.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00694-6

By:

Iqbal, Sajid;
Begum, Farida;
Nguchu, Benedictor Alexander;
Claver, Uzabakiriho Pierre;
Shaw, Peter

Publication type:

Article

Opposite effects of N on warming-induced changes in bacterial and fungal diversity.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00693-7

By:

Xu, Jianjun;
Liu, Hao;
Xu, Xiaoni;
Liu, Xiang;
Zhou, Shurong;
Nie, Ming

Publication type:

Article

Fungi promote cross-domain interactions even in deep anoxic mangrove sediments.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00686-6

By:

Ng, Ming Sheng;
Soon, Nathaniel;
Chin, Min Yi;
Ho, Sze Koy;
Drescher, Lynn;
Sani, Mohamad Azlin Bin;
Lim, Kiah Eng;
Wainwright, Benjamin J.;
Chang, Ying

Publication type:

Article

Retraction Note: High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00692-8

By:

Lo, Cheikh Ibrahima;
Sankar, Senthil Alias;
Fall, Bécaye;
Sambe-Ba, Bissoume;
Diawara, Silman;
Gueye, Mamadou Wague;
Mediannikov, Oleg;
Blanc-Tailleur, Caroline;
Wade, Boubacar;
Raoult, Didier;
Fournier, Pierre-Edouard;
Fenollar, Florence

Publication type:

Article

Microbial composition on microplastics mediated by stream impairment.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00685-7

By:

Gilewski, Anne L.;
Shrestha, Saurav;
Kahara, Sharon N.;
Stasulli, Nikolas M.

Publication type:

Article

Microbial transcriptome patterns highlight increased pedogenesis-related activity in arid soils under simulated humid conditions.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00689-3

By:

Rodríguez, Victoria;
Bartholomäus, Alexander;
Liebner, Susanne;
Oses, Romulo;
Scholten, Thomas;
Wagner, Dirk

Publication type:

Article

Diversity and functional features of the root-associated bacteriome are dependent on grapevine susceptibility to Plasmopara viticola.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00690-w

By:

Duret, Morgane;
Wallner, Adrian;
Besaury, Ludovic;
Aziz, Aziz

Publication type:

Article

Ironing out the conflicts: iron supplementation reduces negatives bacterial interactions in the rhizosphere of an Atacama-endemic perennial grass.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-024-00661-7

By:

Aguado-Norese, Constanza;
Maldonado, Jonathan E.;
Hodar, Christian;
Galvez, Gabriel;
Palma, Daniel E.;
Cambiazo, Verónica;
Gonzalez, Mauricio

Publication type:

Article

Alternative stable states of microbiome structure and soil ecosystem functions.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00688-4

By:

Fujita, Hiroaki;
Yoshida, Shigenobu;
Suzuki, Kenta;
Toju, Hirokazu

Publication type:

Article

Antimicrobial resistance transmission in the environmental settings through traditional and UV-enabled advanced wastewater treatment plants: a metagenomic insight.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-024-00658-2

By:

Talat, Absar;
Bashir, Yasir;
Khalil, Nadeem;
Brown, Connor L.;
Gupta, Dinesh;
Khan, Asad Ullah

Publication type:

Article