Works matching IS 25246372 AND DT 2025 AND VI 20 AND IP 1

Results: 59

Metabarcoding insights into microbial drivers of flavor development and quality stability in traditional Chinese red pepper sauce: impacts of varietal selection and solar/shade fermentation.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00717-2

By:

Gong, Xuefeng;
Xu, Yi;
Hou, Sihao;
Li, Hong;
Chen, Xin;
Song, Zhanfeng

Publication type:

Article

Impact of fluoroquinolone and heavy metal pollution on antibiotic resistance maintenance in aquatic ecosystems.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00722-5

By:

Dehon, Emilie;
Vrchovecká, Stanislava;
Mathieu, Alban;
Favre-Bonté, Sabine;
Wacławek, Stanisław;
Droit, Arnaud;
Vogel, Timothy M.;
Sanchez-Cid, Concepcion

Publication type:

Article

Effect of applying oyster shell powder on soil properties and microbial diversity in the acidified soils of pomelo garden.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00721-6

By:

Li, Yuanyuan;
Zhang, Qiong;
Zhu, Lixia;
Yang, Jing;
Wei, Jingjing;
Li, Yunhe;
Chen, Xiaohuang

Publication type:

Article

Rain-shelter cultivation promotes grapevine health by altering phyllosphere microecology in rainy areas.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00708-3

By:

He, Tao;
Moukarzel, Romy;
Fu, Mingxin;
Yang, Meng;
Du, Ronghui;
Zhao, Jing;
Liu, Jinyu;
Wu, Jiaqing;
Deng, Weiping;
Zhu, Yifan;
Yang, Min;
Zhu, Shusheng;
Du, Fei

Publication type:

Article

Plant microbiome responses to bioinoculants and volatiles.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00715-4

By:

Olimi, Expedito;
Duller, Martina;
Stangl, Martina;
Bickel, Samuel;
Battisti, Angelika;
Kusstatscher, Peter;
Wicaksono, Wisnu Adi;
Abdelfattah, Ahmed;
Cernava, Tomislav;
Berg, Gabriele

Publication type:

Article

Distinct microbial communities drive methane cycling in below- and above-ground compartments of tropical cloud forests growing on peat.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00718-1

By:

Kazmi, Fahad Ali;
Mander, Ülo;
Khanongnuch, Ramita;
Öpik, Maarja;
Ranniku, Reti;
Soosaar, Kaido;
Masta, Mohit;
Tenhovirta, Salla A. M.;
Kasak, Kuno;
Ah-Peng, Claudine;
Espenberg, Mikk

Publication type:

Article

Metabarcoding with Illumina and Oxford Nanopore Technologies provides complementary insights into tree seed mycobiota.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00712-7

By:

Mittelstrass, Jana;
Heinzelmann, Renate;
Eschen, René;
Hartmann, Martin;
Kupper, Quirin;
Schneider, Salome;
Prospero, Simone;
Franić, Iva

Publication type:

Article

Identifying rhizosphere bacteria and potential mechanisms linked to compost suppressiveness towards Fusarium oxysporum.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00710-9

By:

Amutuhaire, Hildah;
Faigenboim-Doron, Adi;
Kraut-Cohen, Judith;
Friedman, Jonathan;
Cytryn, Eddie

Publication type:

Article

Spatial scale modulates stochastic and deterministic influence on biogeography of photosynthetic biofilms in Southeast Asian hot springs.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00711-8

By:

George, Christaline;
Kortheerakul, Chananwat;
Khunthong, Nitthiya;
Sharma, Chitrabhanu;
Luo, Danli;
Chan, Kok-Gan;
Daroch, Maurycy;
Hyde, Kevin D.;
Lee, Patrick K. H.;
Goh, Kian Mau;
Waditee-Sirisattha, Rungaroon;
Pointing, Stephen B.

Publication type:

Article

A comparative study: impact of chemical and biological fungicides on soil bacterial communities.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00713-6

By:

Tagele, Setu Bazie;
Gachomo, Emma W.

Publication type:

Article

Component specific responses of the microbiomes to common chemical stressors in the human food chain.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00700-x

By:

Wasimuddin;
Chiaia-Hernandez, Aurea;
Terrettaz, Céline;
Thoenen, Lisa;
Caggìa, Veronica;
Mateo, Pierre;
Coll-Crespi, Miquel;
Notter, Matheus;
Mukherjee, Mohana;
Chavez-Capilla, Teresa;
Ronchi, Francesca;
Ganal-Vonarburg, Stephanie C.;
Grosjean, Martin;
Bigalke, Moritz;
Spielvogel, Sandra;
Macpherson, Andrew;
Mestrot, Adrien;
Hapfelmeier, Siegfried;
Erb, Matthias;
Schlaeppi, Klaus

Publication type:

Article

Unveiling plasmid diversity and functionality in pristine groundwater.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00703-8

By:

Pérez-Carrascal, Olga María;
Pratama, Akbar Adjie;
Sullivan, Matthew B.;
Küsel, Kirsten

Publication type:

Article

Influence of genotype, nodule position, and edaphic factors on microbial diversity and assembly of pigeonpea (Cajanus cajan) root nodules in Indian soils.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00707-4

By:

Basu, Anirban;
Chalasani, Danteswari;
Sarma, P.V.S.R.N.;
Uikey, Sheetal;
Chenna, Vijaya Ranganatha;
Choudhari, Pushpajeet Lokpal;
Podile, Appa Rao

Publication type:

Article

The unresolved struggle of 16S rRNA amplicon sequencing: a benchmarking analysis of clustering and denoising methods.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00705-6

By:

Fares, Mohamed;
Tharwat, Engy K.;
Cleenwerck, Ilse;
Monsieurs, Pieter;
Van Houdt, Rob;
Vandamme, Peter;
El-Hadidi, Mohamed;
Mysara, Mohamed

Publication type:

Article

Small-scale heterogeneity of soil properties in farmland affected fava beans growth through rhizosphere differential metabolites and microorganisms.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00706-5

By:

Wang, Linbin;
Wu, Yufeng;
Zhao, Zhi-Bo;
Jia, Tingsheng

Publication type:

Article

Jellyfish blooms through the microbial lens: temporal changes, cross-species and Jellyfish-water comparisons.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00714-5

By:

Barak, Noga;
Brekhman, Vera;
Aharonovich, Dikla;
Lotan, Tamar;
Sher, Daniel

Publication type:

Article

Genomic characterisation of novel extremophile lineages from the thalassohaline lake Dziani Dzaha expands the metabolic repertoire of the PVC superphylum.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00699-1

By:

Vigneron, Adrien;
Cloarec, Lilian A.;
Brochier-Armanet, Céline;
Flandrois, Jean Pierre;
Troussellier, Marc;
Bernard, Cécile;
Agogué, Hélène;
Oger, Philippe M.;
Hugoni, Mylène

Publication type:

Article

Impact of microbiological molecular methodologies on adaptive sampling using nanopore sequencing in metagenomic studies.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00704-7

By:

Herbert, Josephine;
Thompson, Stanley;
Beckett, Angela H.;
Robson, Samuel C.

Publication type:

Article

Antibiotic type and dose variably affect microbiomes of a disease-resistant Acropora cervicornis genotype.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00709-2

By:

Patton, Sunni;
Silva, Denise P.;
Fuques, Eddie;
Klinges, Grace;
Muller, Erinn M.;
Thurber, Rebecca L. Vega

Publication type:

Article

Diverse lifestyles and adaptive evolution of uncultured UBA5794 actinobacteria, a sister order of "Candidatus actinomarinales".

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00701-w

By:

Huang, Jing;
Zheng, Xiaowei;
Yu, Tao;
Ali, Mohsin;
Wiese, Jutta;
Hu, Songnian;
Huang, Li;
Huang, Ying

Publication type:

Article

Seasonal dynamics and factors shaping microbiomes in freshwater finfish earthen aquaculture ponds in Bangladesh.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00687-5

By:

Debnath, Sanjit C.;
Chaput, Dominique L.;
McMurtrie, Jamie;
Bell, Ashley G.;
Temperton, Ben;
Mohan, Chadag V.;
Alam, Md. M.;
Hasan, Neaz A.;
Haque, Mohammad M.;
Bass, David;
Tyler, Charles R.

Publication type:

Article

Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00691-9

By:

Fournier, Paola;
Pellan, Lucile;
Jaswa, Aarti;
Cambon, Marine C.;
Chataigner, Alexandre;
Bonnard, Olivier;
Raynal, Marc;
Debord, Christian;
Poeydebat, Charlotte;
Labarthe, Simon;
Delmotte, François;
This, Patrice;
Vacher, Corinne

Publication type:

Article

Revealing microbial consortia that interfere with grapevine downy mildew through microbiome epidemiology.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00691-9

By:

Fournier, Paola;
Pellan, Lucile;
Jaswa, Aarti;
Cambon, Marine C.;
Chataigner, Alexandre;
Bonnard, Olivier;
Raynal, Marc;
Debord, Christian;
Poeydebat, Charlotte;
Labarthe, Simon;
Delmotte, François;
This, Patrice;
Vacher, Corinne

Publication type:

Article

The invisible architects: microbial communities and their transformative role in soil health and global climate changes.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00694-6

By:

Iqbal, Sajid;
Begum, Farida;
Nguchu, Benedictor Alexander;
Claver, Uzabakiriho Pierre;
Shaw, Peter

Publication type:

Article

Opposite effects of N on warming-induced changes in bacterial and fungal diversity.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00693-7

By:

Xu, Jianjun;
Liu, Hao;
Xu, Xiaoni;
Liu, Xiang;
Zhou, Shurong;
Nie, Ming

Publication type:

Article

Fungi promote cross-domain interactions even in deep anoxic mangrove sediments.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00686-6

By:

Ng, Ming Sheng;
Soon, Nathaniel;
Chin, Min Yi;
Ho, Sze Koy;
Drescher, Lynn;
Sani, Mohamad Azlin Bin;
Lim, Kiah Eng;
Wainwright, Benjamin J.;
Chang, Ying

Publication type:

Article

Retraction Note: High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00692-8

By:

Lo, Cheikh Ibrahima;
Sankar, Senthil Alias;
Fall, Bécaye;
Sambe-Ba, Bissoume;
Diawara, Silman;
Gueye, Mamadou Wague;
Mediannikov, Oleg;
Blanc-Tailleur, Caroline;
Wade, Boubacar;
Raoult, Didier;
Fournier, Pierre-Edouard;
Fenollar, Florence

Publication type:

Article

Microbial composition on microplastics mediated by stream impairment.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00685-7

By:

Gilewski, Anne L.;
Shrestha, Saurav;
Kahara, Sharon N.;
Stasulli, Nikolas M.

Publication type:

Article

Microbial transcriptome patterns highlight increased pedogenesis-related activity in arid soils under simulated humid conditions.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00689-3

By:

Rodríguez, Victoria;
Bartholomäus, Alexander;
Liebner, Susanne;
Oses, Romulo;
Scholten, Thomas;
Wagner, Dirk

Publication type:

Article

Diversity and functional features of the root-associated bacteriome are dependent on grapevine susceptibility to Plasmopara viticola.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00690-w

By:

Duret, Morgane;
Wallner, Adrian;
Besaury, Ludovic;
Aziz, Aziz

Publication type:

Article

Ironing out the conflicts: iron supplementation reduces negatives bacterial interactions in the rhizosphere of an Atacama-endemic perennial grass.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-024-00661-7

By:

Aguado-Norese, Constanza;
Maldonado, Jonathan E.;
Hodar, Christian;
Galvez, Gabriel;
Palma, Daniel E.;
Cambiazo, Verónica;
Gonzalez, Mauricio

Publication type:

Article

Alternative stable states of microbiome structure and soil ecosystem functions.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00688-4

By:

Fujita, Hiroaki;
Yoshida, Shigenobu;
Suzuki, Kenta;
Toju, Hirokazu

Publication type:

Article

Antimicrobial resistance transmission in the environmental settings through traditional and UV-enabled advanced wastewater treatment plants: a metagenomic insight.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-024-00658-2

By:

Talat, Absar;
Bashir, Yasir;
Khalil, Nadeem;
Brown, Connor L.;
Gupta, Dinesh;
Khan, Asad Ullah

Publication type:

Article

Effects of drainage and long-term tillage on greenhouse gas fluxes in a natural wetland: insights from microbial mechanisms.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00682-w

By:

Liu, Fengqin;
Yang, Jiale;
Shen, Wenyan;
Fu, Jiale;
Meng, Jia;
Zhang, Yupeng;
Li, Jianzheng;
Yuan, Zhiliang

Publication type:

Article

Microbial landscape of Indian homes: the microbial diversity, pathogens and antimicrobial resistome in urban residential spaces.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00684-8

By:

Awasthi, Saraswati;
Hiremath, Vikas M;
Nain, Sonam;
Malik, Shweta;
Srinivasan, Vanita;
Rose, Pooja;
Choudhury, Ashutosh;
Grover, Ritika;
Sharma, Rakesh

Publication type:

Article

A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00681-x

By:

Foucault, Pierre;
Halary, Sébastien;
Duval, Charlotte;
Goto, Midoli;
Marie, Benjamin;
Hamlaoui, Sahima;
Jardillier, Ludwig;
Lamy, Dominique;
Lance, Emilie;
Raimbault, Emmanuelle;
Allouti, Fayçal;
Troussellier, Marc;
Bernard, Cécile;
Leloup, Julie;
Duperron, Sébastien

Publication type:

Article

Spatiotemporal dynamics reveal high turnover and contrasting assembly processes in fungal communities across contiguous habitats of tropical forests.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00683-9

By:

Lin, Chieh-Ping;
Lin, Yu-Fei;
Liu, Yu-Ching;
Lu, Mei-Yeh Jade;
Ke, Huei-Mien;
Tsai, Isheng Jason

Publication type:

Article

Soil organic matter composition affects ecosystem multifunctionality by mediating the composition of microbial communities in long-term restored meadows.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00678-6

By:

Wang, Wenyin;
Bi, Sisi;
Li, Fei;
Degen, A. Allan;
Li, Shanshan;
Huang, Mei;
Luo, Binyu;
Zhang, Tao;
Qi, Shuai;
Qi, Tianyun;
Bai, Yanfu;
Liu, Peipei;
Shang, Zhanhuan

Publication type:

Article

Spatial and temporal variation of Antarctic microbial interactions: a study around the west Antarctic Peninsula.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00663-z

By:

Sow, Swan L. S.;
van de Poll, Willem H.;
Eveleth, Rachel;
Rich, Jeremy J.;
Ducklow, Hugh W.;
Rozema, Patrick D.;
Luria, Catherine M.;
Bolhuis, Henk;
Meredith, Michael P.;
Amaral-Zettler, Linda A.;
Engelmann, Julia C.

Publication type:

Article

Phytochrome-mediated shade avoidance responses impact the structure and composition of the bacterial phyllosphere microbiome of Arabidopsis.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00679-5

By:

O'Rourke, James A.;
Vincent, Stacey A.;
Williams, Isabel E. I.;
Gascoyne, Eleanor L.;
Devlin, Paul F.

Publication type:

Article

Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00669-7

By:

Alamoudi, Rayyan;
Barozzi, Alan;
Michoud, Grégoire;
Van Goethem, Marc W.;
Odobel, Charlene;
Chen, Yue;
Marasco, Ramona;
Daffonchio, Daniele

Publication type:

Article

Plant-microbe interactions influence plant performance via boosting beneficial root-endophytic bacteria.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00680-y

By:

Guo, Sai;
Pan, Rubin;
Zhang, Yan;
Gu, Quanwei;
Shen, Qirong;
Yang, Jian;
Huang, Luqi;
Shen, Zongzhuan;
Li, Rong

Publication type:

Article

A systematic scoping review reveals that geographic and taxonomic patterns influence the scientific and societal interest in urban soil microbial diversity.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00677-7

By:

Masson, Simon;
Chialva, Matteo;
Bongiovanni, Davide;
Adamo, Martino;
Stefanini, Irene;
Lanfranco, Luisa

Publication type:

Article

Insights into quinoa endophytes: core bacterial communities reveal high stability to water stress and genotypic variation.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00673-x

By:

Maestro-Gaitán, Isaac;
Redondo-Nieto, Miguel;
González-Bodí, Sara;
Rodríguez-Casillas, Laura;
Matías, Javier;
Bolaños, Luis;
Reguera, María

Publication type:

Article

Commercial bioinoculants improve colonization but do not alter the arbuscular mycorrhizal fungal community of greenhouse-grown grapevine roots.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00676-8

By:

Berdeja, Mariam P.;
Reynolds, Nicole K.;
Pawlowska, Teresa;
Heuvel, Justine E. Vanden

Publication type:

Article

Peptide nucleic acid (PNA) clamps reduce amplification of host chloroplast and mitochondria rRNA gene sequences and increase detected diversity in 16S rRNA gene profiling analysis of oak-associated microbiota.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00674-w

By:

Hussain, Usman;
Downie, Jim;
Ellison, Amy;
Denman, Sandra;
McDonald, James;
Cambon, Marine C.

Publication type:

Article

Differential responses of root and leaf-associated microbiota to continuous monocultures.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00675-9

By:

Li, Hao-Ran;
Zhang, Xiang-Yu;
He, Kai-Ling;
Xu, Xin;
Chen, Xin-Wen;
Ullah, Yaseen;
Zhang, Ting-Ting;
Chen, Yan;
Dai, Chuan-Chao;
Zhang, Wei

Publication type:

Article

Bioinoculant-induced plant resistance is modulated by interactions with resident soil microbes.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00667-9

By:

Rasool, Shumaila;
Groos, Manon;
Hannula, S. Emilia;
Biere, Arjen

Publication type:

Article

Microbial generalists as keystone species: constructing core network modules in the anthosphere of twelve diverse wild plant species.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00666-w

By:

Kim, Jihoon;
Cui, Yingshun;
Nam, Kyong-Hee;
Lee, Jun-Woo;
Kim, Jong-Geol;
Chun, Seong-Jun

Publication type:

Article

Assessing the impact of sewage and wastewater on antimicrobial resistance in nearshore Antarctic biofilms and sediments.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00671-z

By:

Clark, Melody S;
Gregson, Benjamin H;
Greco, Carla;
Nair, Harisree Paramel;
Clark, Marlon;
Evans, Claire;
Hughes, Kevin A.;
Hwengwere, Kudzai;
Leung, Marcus;
Peck, Lloyd S;
Walker, Caray A.;
Chow, William

Publication type:

Article