Works matching IS 25246372 AND DT 2022 AND VI 17 AND IP 1

Results: 64

Temporary establishment of bacteria from indoor plant leaves and soil on human skin.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00457-7

By:

Mhuireach, Gwynne Á.;
Fahimipour, Ashkaan K.;
Vandegrift, Roo;
Muscarella, Mario E.;
Hickey, Roxana;
Bateman, Ashley C.;
Van Den Wymelenberg, Kevin G.;
Bohannan, Brendan J. M.

Publication type:

Article

Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00455-9

By:

Sierra, Maria A.;
Ryon, Krista A.;
Tierney, Braden T.;
Foox, Jonathan;
Bhattacharya, Chandrima;
Afshin, Evan;
Butler, Daniel;
Green, Stefan J.;
Thomas, W. Kelley;
Ramsdell, Jordan;
Bivens, Nathan J.;
McGrath, Ken;
Mason, Christopher E.;
Tighe, Scott W.

Publication type:

Article

Legacy effects of fumigation on soil bacterial and fungal communities and their response to metam sodium application.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00454-w

By:

Li, Xiaoping;
Skillman, Victoria;
Dung, Jeremiah;
Frost, Kenneth

Publication type:

Article

Beyond the snapshot: identification of the timeless, enduring indicator microbiome informing soil fertility and crop production in alkaline soils.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00420-6

By:

Zhang, Jianwei;
Dolfing, Jan;
Liu, Wenjing;
Chen, Ruirui;
Zhang, Jiabao;
Lin, Xiangui;
Feng, Youzhi

Publication type:

Article

Expanding known viral diversity in plants: virome of 161 species alongside an ancient canal.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00453-x

By:

Yang, Shixing;
Mao, Qingqing;
Wang, Yan;
He, Jingxian;
Yang, Jie;
Chen, Xu;
Xiao, Yuqing;
He, Yumin;
Zhao, Min;
Lu, Juan;
Yang, Zijun;
Dai, Ziyuan;
Liu, Qi;
Yao, Yuxin;
Lu, Xiang;
Li, Hong;
Zhou, Rui;
Zeng, Jian;
Li, Wang;
Zhou, Chenglin

Publication type:

Article

MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00449-7

By:

Nata'ala, Muhammad Kabiru;
Avila Santos, Anderson P.;
Coelho Kasmanas, Jonas;
Bartholomäus, Alexander;
Saraiva, João Pedro;
Godinho Silva, Sandra;
Keller-Costa, Tina;
Costa, Rodrigo;
Gomes, Newton C. M.;
Ponce de Leon Ferreira de Carvalho, André Carlos;
Stadler, Peter F.;
Sipoli Sanches, Danilo;
Nunes da Rocha, Ulisses

Publication type:

Article

Australian native Glycine clandestina seed microbiota hosts a more diverse bacterial community than the domesticated soybean Glycine max.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00452-y

By:

Chandel, Ankush;
Mann, Ross;
Kaur, Jatinder;
Tannenbaum, Ian;
Norton, Sally;
Edwards, Jacqueline;
Spangenberg, German;
Sawbridge, Timothy

Publication type:

Article

Alternative approaches to identify core bacteria in Fucus distichus microbiome and assess their distribution and host-specificity.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00451-z

By:

Park, Jungsoo;
Davis, Katherine;
Lajoie, Geneviève;
Parfrey, Laura Wegener

Publication type:

Article

A comprehensive assessment of fungal communities in various habitats from an ice-free area of maritime Antarctica: diversity, distribution, and ecological trait.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00450-0

By:

Zhang, Tao;
Yan, Dong;
Ji, Zhongqiang;
Chen, Xiufei;
Yu, Liyan

Publication type:

Article

Sequencing introduced false positive rare taxa lead to biased microbial community diversity, assembly, and interaction interpretation in amplicon studies.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00436-y

By:

Jia, Yangyang;
Zhao, Shengguo;
Guo, Wenjie;
Peng, Ling;
Zhao, Fang;
Wang, Lushan;
Fan, Guangyi;
Zhu, Yuanfang;
Xu, Dayou;
Liu, Guilin;
Wang, Ruoqing;
Fang, Xiaodong;
Zhang, He;
Kristiansen, Karsten;
Zhang, Wenwei;
Chen, Jianwei

Publication type:

Article

Metagenomic assembly reveals hosts and mobility of common antibiotic resistome in animal manure and commercial compost.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00437-x

By:

Qiu, Tianlei;
Huo, Linhe;
Guo, Yajie;
Gao, Min;
Wang, Guoliang;
Hu, Dong;
Li, Cheng;
Wang, Zhanwu;
Liu, Guiming;
Wang, Xuming

Publication type:

Article

Microplastic exposure across trophic levels: effects on the host–microbiota of freshwater organisms.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00429-x

By:

Varg, Javier Edo;
Outomuro, David;
Kunce, Warren;
Kuehrer, Lukas;
Svanbäck, Richard;
Johansson, Frank

Publication type:

Article

Land-use intensification differentially affects bacterial, fungal and protist communities and decreases microbiome network complexity.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-021-00396-9

By:

Romdhane, Sana;
Spor, Aymé;
Banerjee, Samiran;
Breuil, Marie-Christine;
Bru, David;
Chabbi, Abad;
Hallin, Sara;
van der Heijden, Marcel G. A.;
Saghai, Aurélien;
Philippot, Laurent

Publication type:

Article

Frequency of occurrence and habitat selection shape the spatial variation in the antibiotic resistome in riverine ecosystems in eastern China.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00447-9

By:

Jiang, Chunxia;
Chen, Haiyang;
Grossart, Hans-Peter;
Zhang, Quanfa;
Stoks, Robby;
Zhao, Yi;
Ju, Feng;
Liu, Wenzhi;
Yang, Yuyi

Publication type:

Article

Diversity analysis of leaf endophytic fungi and rhizosphere soil fungi of Korean Epimedium at different growth stages.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00446-w

By:

Jiawen, Chen;
Yuan, Wu;
Xin, Zhuang;
Junjie, Guo;
Xing, Hu;
Jinglei, Xiao

Publication type:

Article

Functionally-explicit sampling can answer key questions about the specificity of plant–microbe interactions.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00445-x

By:

Fleishman, Suzanne M.;
Eissenstat, David M.;
Bell, Terrence H.;
Centinari, Michela

Publication type:

Article

Microbiome ethics, guiding principles for microbiome research, use and knowledge management.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00444-y

By:

Lange, Lene;
Berg, Gabriele;
Cernava, Tomislav;
Champomier-Vergès, Marie-Christine;
Charles, Trevor;
Cocolin, Luca;
Cotter, Paul;
D'Hondt, Kathleen;
Kostic, Tanja;
Maguin, Emmanuelle;
Makhalanyane, Thulani;
Meisner, Annelein;
Ryan, Matthew;
Kiran, George Seghal;
de Souza, Rafael Soares;
Sanz, Yolanda;
Schloter, Michael;
Smidt, Hauke;
Wakelin, Steve;
Sessitsch, Angela

Publication type:

Article

Nitrogen deposition experiment mimicked with NH<sub>4</sub>NO<sub>3</sub> overestimates the effect on soil microbial community composition and functional potential in the Eurasian steppe.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00441-1

By:

Li, Tingting;
Zhang, Zijia;
Ma, Yiping;
Song, Yuqian;
Yang, Guojiao;
Han, Xingguo;
Zhang, Ximei

Publication type:

Article

Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00440-2

By:

Smrhova, Tereza;
Jani, Kunal;
Pajer, Petr;
Kapinusova, Gabriela;
Vylita, Tomas;
Suman, Jachym;
Strejcek, Michal;
Uhlik, Ondrej

Publication type:

Article

Associated bacteria of a pine sawyer beetle confer resistance to entomopathogenic fungi via fungal growth inhibition.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00443-z

By:

Deng, Jundan;
Xu, Weikang;
Lv, Guochang;
Yuan, Hang;
Zhang, Qing-He;
Wickham, Jacob D.;
Xu, Letian;
Zhang, Longwa

Publication type:

Article

The core bacterial microbiome of banana (Musa spp.).

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00442-0

By:

Birt, Henry W. G.;
Pattison, Anthony B.;
Skarshewski, Adam;
Daniells, Jeff;
Raghavendra, Anil;
Dennis, Paul G.

Publication type:

Article

The impact of biochar on wood-inhabiting bacterial community and its function in a boreal pine forest.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00439-9

By:

Qu, Zhao-lei;
Li, Xiao-li;
Ge, Yan;
Palviainen, Marjo;
Zhou, Xuan;
Heinonsalo, Jussi;
Berninger, Frank;
Pumpanen, Jukka;
Köster, Kajar;
Sun, Hui

Publication type:

Article

Competition-cooperation in the chemoautotrophic ecosystem of Movile Cave: first metagenomic approach on sediments.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00438-w

By:

Chiciudean, Iulia;
Russo, Giancarlo;
Bogdan, Diana Felicia;
Levei, Erika Andrea;
Faur, Luchiana;
Hillebrand-Voiculescu, Alexandra;
Moldovan, Oana Teodora;
Banciu, Horia Leonard

Publication type:

Article

Nutrient-limited subarctic caves harbour more diverse and complex bacterial communities than their surface soil.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00435-z

By:

Reboleira, Ana Sofia;
Bodawatta, Kasun H.;
Ravn, Nynne M. R.;
Lauritzen, Stein-Erik;
Skoglund, Rannveig Øvrevik;
Poulsen, Michael;
Michelsen, Anders;
Jønsson, Knud Andreas

Publication type:

Article

Landscape scale ecology of Tetracladium spp. fungal root endophytes.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00431-3

By:

Lazar, Anna;
Mushinski, Ryan M.;
Bending, Gary D.

Publication type:

Article

Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00432-2

By:

Palomo, Alejandro;
Azevedo, Daniela;
Touceda-Suárez, María;
Domingo-Félez, Carlos;
Mutlu, A. Gizem;
Dechesne, Arnaud;
Wang, Yulin;
Zhang, Tong;
Smets, Barth F.

Publication type:

Article

Structure and specialization of mycorrhizal networks in phylogenetically diverse tropical communities.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00434-0

By:

Perez-Lamarque, Benoît;
Petrolli, Rémi;
Strullu-Derrien, Christine;
Strasberg, Dominique;
Morlon, Hélène;
Selosse, Marc-André;
Martos, Florent

Publication type:

Article

Ecosystem-specific microbiota and microbiome databases in the era of big data.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00433-1

By:

Lobanov, Victor;
Gobet, Angélique;
Joyce, Alyssa

Publication type:

Article

Correction to: Soil environment reshapes microbiota of laboratory-maintained Collembola during host development.

Published in:

2022

By:

Pathiraja, Duleepa;
Wee, June;
Cho, Kijong;
Choi, In-Geol

Publication type:

Correction Notice

Distinctive signatures of pathogenic and antibiotic resistant potentials in the hadal microbiome.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00413-5

By:

He, Liuqing;
Huang, Xinyu;
Zhang, Guoqing;
Yuan, Ling;
Shen, Enhui;
Zhang, Lu;
Zhang, Xiao-Hua;
Zhang, Tong;
Tao, Liang;
Ju, Feng

Publication type:

Article

Teasing apart the host-related, nutrient-related and temperature-related effects shaping the phenology and microbiome of the tropical seagrass Halophila stipulacea.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00412-6

By:

Szitenberg, Amir;
Beca-Carretero, Pedro;
Azcárate-García, Tomás;
Yergaliyev, Timur;
Alexander-Shani, Rivka;
Winters, Gidon

Publication type:

Article

Methanol utilizers of the rhizosphere and phyllosphere of a common grass and forb host species.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00428-y

By:

Kanukollu, Saranya;
Remus, Rainer;
Rücker, Alexander Martin;
Buchen-Tschiskale, Caroline;
Hoffmann, Mathias;
Kolb, Steffen

Publication type:

Article

specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00426-0

By:

Darcy, John L.;
Amend, Anthony S.;
Swift, Sean O. I.;
Sommers, Pacifica S.;
Lozupone, Catherine A.

Publication type:

Article

Plastisphere community assemblage of aquatic environment: plastic-microbe interaction, role in degradation and characterization technologies.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00430-4

By:

Dey, Sujata;
Rout, Ajaya Kumar;
Behera, Bijay Kumar;
Ghosh, Koushik

Publication type:

Article

Metadata harmonization–Standards are the key for a better usage of omics data for integrative microbiome analysis.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00425-1

By:

Cernava, Tomislav;
Rybakova, Daria;
Buscot, François;
Clavel, Thomas;
McHardy, Alice Carolyn;
Meyer, Fernando;
Meyer, Folker;
Overmann, Jörg;
Stecher, Bärbel;
Sessitsch, Angela;
Schloter, Michael;
Berg, Gabriele;
The MicrobiomeSupport Team;
Arruda, Paulo;
Bartzanas, Thomas;
Kostic, Tanja;
Brennan, Paula Iara;
Biazotti, Bárbara Bort;
Champomier-Verges, Marie-Christine;
Charles, Trevor

Publication type:

Article

Spatio-temporal variation in the root-associated microbiota of orchard-grown apple trees.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00427-z

By:

Becker, Maximilian Fernando;
Hellmann, Manfred;
Knief, Claudia

Publication type:

Article

In-depth characterization of denitrifier communities across different soil ecosystems in the tundra.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00424-2

By:

Pessi, Igor S.;
Viitamäki, Sirja;
Virkkala, Anna-Maria;
Eronen-Rasimus, Eeva;
Delmont, Tom O.;
Marushchak, Maija E.;
Luoto, Miska;
Hultman, Jenni

Publication type:

Article

Phyllosphere bacterial and fungal communities vary with host species identity, plant traits and seasonality in a subtropical forest.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00423-3

By:

Li, Mengjiao;
Hong, Lan;
Ye, Wanhui;
Wang, Zhangming;
Shen, Hao

Publication type:

Article

Deciphering core phyllomicrobiome assemblage on rice genotypes grown in contrasting agroclimatic zones: implications for phyllomicrobiome engineering against blast disease.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00421-5

By:

Sahu, Kuleshwar Prasad;
Kumar, A.;
Sakthivel, K.;
Reddy, Bhaskar;
Kumar, Mukesh;
Patel, Asharani;
Sheoran, Neelam;
Gopalakrishnan, Subbaiyan;
Prakash, Ganesan;
Rathour, Rajeev;
Gautam, R. K.

Publication type:

Article

Sustainability of the rice-crayfish co-culture aquaculture model: microbiome profiles based on multi-kingdom analyses.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00422-4

By:

Zhu, Xue;
Ji, Lei;
Cheng, Mingyue;
Wei, Huimin;
Wang, Zhi;
Ning, Kang

Publication type:

Article

Natural selenium stress influences the changes of antibiotic resistome in seleniferous forest soils.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00419-z

By:

Wang, Fang-Fang;
Liu, Guo-Ping;
Zhang, Fan;
Li, Zong-Ming;
Yang, Xiao-Lin;
Yang, Chao-Dong;
Shen, Jian-Lin;
He, Ji-Zheng;
Li, B. Larry;
Zeng, Jian-Guo

Publication type:

Article

Beyond the snapshot: identification of the timeless, enduring indicator microbiome informing soil fertility and crop production in alkaline soils.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00420-6

By:

Zhang, Jianwei;
Dolfing, Jan;
Liu, Wenjing;
Chen, Ruirui;
Zhang, Jiabao;
Lin, Xiangui;
Feng, Youzhi

Publication type:

Article

A putatively new family of alphaproteobacterial chloromethane degraders from a deciduous forest soil revealed by stable isotope probing and metagenomics.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00416-2

By:

Kröber, Eileen;
Kanukollu, Saranya;
Wende, Sonja;
Bringel, Françoise;
Kolb, Steffen

Publication type:

Article

Glycyrrhiza uralensis Fisch. Root-associated microbiota: the multifaceted hubs associated with environmental factors, growth status and accumulation of secondary metabolites.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00418-0

By:

Chen, Chaoyun;
Zhong, Chaofang;
Gao, Xi;
Tan, Chongyang;
Bai, Hong;
Ning, Kang

Publication type:

Article

Long-term patterns of an interconnected core marine microbiota.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00417-1

By:

Krabberød, Anders K.;
Deutschmann, Ina M.;
Bjorbækmo, Marit F. M.;
Balagué, Vanessa;
Giner, Caterina R.;
Ferrera, Isabel;
Garcés, Esther;
Massana, Ramon;
Gasol, Josep M.;
Logares, Ramiro

Publication type:

Article

Insights into the microbiome assembly during different growth stages and storage of strawberry plants.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00415-3

By:

Olimi, Expedito;
Kusstatscher, Peter;
Wicaksono, Wisnu Adi;
Abdelfattah, Ahmed;
Cernava, Tomislav;
Berg, Gabriele

Publication type:

Article

Soil environment reshapes microbiota of laboratory-maintained Collembola during host development.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00411-7

By:

Pathiraja, Duleepa;
Wee, June;
Cho, Kijong;
Choi, In-Geol

Publication type:

Article

Heterogeneity of soil bacterial and bacteriophage communities in three rice agroecosystems and potential impacts of bacteriophage on nutrient cycling.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00410-8

By:

Wang, Yajiao;
Liu, Yu;
Wu, Yuxing;
Wu, Nan;
Liu, Wenwen;
Wang, Xifeng

Publication type:

Article

Soil environment reshapes microbiota of laboratory-maintained Collembola during host development.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00411-7

By:

Pathiraja, Duleepa;
Wee, June;
Cho, Kijong;
Choi, In-Geol

Publication type:

Article

Soil environment reshapes microbiota of laboratory-maintained Collembola during host development.

Published in:

Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00411-7

By:

Pathiraja, Duleepa;
Wee, June;
Cho, Kijong;
Choi, In-Geol

Publication type:

Article