Works in Environmental Microbiome, 2021, Vol 16, Issue 1

Results: 26

Seasonality, shelf life and storage atmosphere are main drivers of the microbiome and E. coli O157:H7 colonization of post-harvest lettuce cultivated in a major production area in California.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00393-y

By:

Leonard, Susan R.;
Simko, Ivan;
Mammel, Mark K.;
Richter, Taylor K. S.;
Brandl, Maria T.

Publication type:

Article

The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00395-w

By:

Chaudhari, Narendrakumar M.;
Overholt, Will A.;
Figueroa-Gonzalez, Perla Abigail;
Taubert, Martin;
Bornemann, Till L. V.;
Probst, Alexander J.;
Hölzer, Martin;
Marz, Manja;
Küsel, Kirsten

Publication type:

Article

Grapevine wood microbiome analysis identifies key fungal pathogens and potential interactions with the bacterial community implicated in grapevine trunk disease appearance.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00390-1

By:

Fotios, Bekris;
Sotirios, Vasileiadis;
Elena, Papadopoulou;
Anastasios, Samaras;
Stefanos, Testempasis;
Danae, Gkizi;
Georgia, Tavlaki;
Aliki, Tzima;
Epaminondas, Paplomatas;
Emmanuel, Markakis;
George, Karaoglanidis;
Kalliope, Papadopoulou K.;
Dimitrios, Karpouzas G.

Publication type:

Article

Estuarine gradients dictate spatiotemporal variations of microbiome networks in the Chesapeake Bay.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00392-z

By:

Wang, Hualong;
Chen, Feng;
Zhang, Chuanlun;
Wang, Min;
Kan, Jinjun

Publication type:

Article

Co-occurrence of planktonic bacteria and archaea affects their biogeographic patterns in China's coastal wetlands.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00388-9

By:

Wang, Baoli;
Liu, Na;
Yang, Meiling;
Wang, Lijia;
Liang, Xia;
Liu, Cong-Qiang

Publication type:

Article

Improved quantitative microbiome profiling for environmental antibiotic resistance surveillance.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00391-0

By:

Ott, Amelie;
Quintela-Baluja, Marcos;
Zealand, Andrew M.;
O'Donnell, Greg;
Haniffah, Mohd Ridza Mohd;
Graham, David W.

Publication type:

Article

The treasure inside barley seeds: microbial diversity and plant beneficial bacteria.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00389-8

By:

Bziuk, Nina;
Maccario, Lorrie;
Straube, Benjamin;
Wehner, Gwendolin;
Sørensen, Søren J.;
Schikora, Adam;
Smalla, Kornelia

Publication type:

Article

Co-occurrence of planktonic bacteria and archaea affects their biogeographic patterns in China's coastal wetlands.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00388-9

By:

Wang, Baoli;
Liu, Na;
Yang, Meiling;
Wang, Lijia;
Liang, Xia;
Liu, Cong-Qiang

Publication type:

Article

Crop host signatures reflected by co-association patterns of keystone Bacteria in the rhizosphere microbiota.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00387-w

By:

Lewin, Simon;
Francioli, Davide;
Ulrich, Andreas;
Kolb, Steffen

Publication type:

Article

Isoprene-degrading bacteria associated with the phyllosphere of Salix fragilis, a high isoprene-emitting willow of the Northern Hemisphere.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00386-x

By:

Gibson, Lisa;
Crombie, Andrew T.;
McNamara, Niall P.;
Murrell, J. Colin

Publication type:

Article

Meeting report of the fourth annual Tri-Service Microbiome Consortium symposium.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00384-z

By:

Goodson, Michael S.;
Barbato, Robyn A.;
Karl, J. Philip;
Indest, Karl;
Kelley-Loughnane, Nancy;
Kokoska, Robert;
Mauzy, Camilla;
Racicot, Kenneth;
Varaljay, Vanessa;
Soares, Jason

Publication type:

Article

North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00385-y

By:

Francis, Ben;
Urich, Tim;
Mikolasch, Annett;
Teeling, Hanno;
Amann, Rudolf

Publication type:

Article

Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00383-0

By:

Yukun, Gao;
Jianghui, Cui;
Genzeng, Ren;
Shilin, Wei;
Puyuan, Yang;
Congpei, Yin;
Hongkai, Liang;
Jinhua, Chang

Publication type:

Article

Coupled DNA-labeling and sequencing approach enables the detection of viable-but-non-culturable Vibrio spp. in irrigation water sources in the Chesapeake Bay watershed.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00382-1

By:

Malayil, Leena;
Chattopadhyay, Suhana;
Mongodin, Emmanuel F.;
Sapkota, Amy R.

Publication type:

Article

Soil, senescence and exudate utilisation: characterisation of the Paragon var. spring bread wheat root microbiome.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00381-2

By:

Prudence, Samuel MM.;
Newitt†, Jake T.;
Worsley, Sarah F.;
Macey, Michael C.;
Murrell, J. Colin;
Lehtovirta-Morley, Laura E.;
Hutchings, Matthew I.

Publication type:

Article

Bacterial diversity and predicted enzymatic function in a multipurpose surface water system – from wastewater effluent discharges to drinking water production.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00379-w

By:

Tiwari, Ananda;
Hokajärvi, Anna-Maria;
Domingo, Jorge Santo;
Elk, Michael;
Jayaprakash, Balamuralikrishna;
Ryu, Hodon;
Siponen, Sallamaari;
Vepsäläinen, Asko;
Kauppinen, Ari;
Puurunen, Osmo;
Artimo, Aki;
Perkola, Noora;
Huttula, Timo;
Miettinen, Ilkka T.;
Pitkänen, Tarja

Publication type:

Article

Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00377-y

By:

Chen, Weidong;
Wen, Donghui

Publication type:

Article

Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00380-3

By:

Li, Wenjun;
Li, Xiaofang

Publication type:

Article

Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00378-x

By:

Morales, Marian;
Sentchilo, Vladimir;
Hadadi, Noushin;
van der Meer, Jan Roelof

Publication type:

Article

Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00376-z

By:

Timmins-Schiffman, Emma;
White, Samuel J.;
Thompson, Rhonda Elliott;
Vadopalas, Brent;
Eudeline, Benoit;
Nunn, Brook L.;
Roberts, Steven B.

Publication type:

Article

Deep learning approaches for natural product discovery from plant endophytic microbiomes.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00375-0

By:

Aghdam, Shiva Abdollahi;
Brown, Amanda May Vivian

Publication type:

Article

The microbiome of the Black Sea water column analyzed by shotgun and genome centric metagenomics.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00374-1

By:

Cabello-Yeves, Pedro J.;
Callieri, Cristiana;
Picazo, Antonio;
Mehrshad, Maliheh;
Haro-Moreno, Jose M.;
Roda-Garcia, Juan J.;
Dzhembekova, Nina;
Slabakova, Violeta;
Slabakova, Nataliya;
Moncheva, Snejana;
Rodriguez-Valera, Francisco

Publication type:

Article

Facilitation in the soil microbiome does not necessarily lead to niche expansion.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00373-2

By:

Zhou, Xue;
Leite, Márcio F. A.;
Zhang, Zhenqing;
Tian, Lei;
Chang, Jingjing;
Ma, Lina;
Li, Xiujun;
van Veen, Johannes A.;
Tian, Chunjie;
Kuramae, Eiko E.

Publication type:

Article

Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-021-00372-3

By:

Leal, Catarina;
Fontaine, Florence;
Aziz, Aziz;
Egas, Conceiçao;
Clément, Christophe;
Trotel-Aziz, Patricia

Publication type:

Article

Plastics and the microbiome: impacts and solutions.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-020-00371-w

By:

Lear, G.;
Kingsbury, J. M.;
Franchini, S.;
Gambarini, V.;
Maday, S. D. M.;
Wallbank, J. A.;
Weaver, L.;
Pantos, O.

Publication type:

Article

Microbial diversity of co-occurring heterotrophs in cultures of marine picocyanobacteria.

Published in:

Environmental Microbiome, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s40793-020-00370-x

By:

Kearney, Sean M.;
Thomas, Elaina;
Coe, Allison;
Chisholm, Sallie W.

Publication type:

Article