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PyBrOpS: a Python package for breeding program simulation and optimization for multi-objective breeding.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae199
By:
- Shrote, Robert Z;
- Thompson, Addie M
Publication type:
Article
Complementary approaches to dissect late leaf rust resistance in an interspecific raspberry population.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae202
By:
- Prado, Melina;
- Silva, Allison Vieira da;
- Campos, Gabriela Romêro;
- Borges, Karina Lima Reis;
- Yassue, Rafael Massahiro;
- Husein, Gustavo;
- Akens, Felix Frederik;
- Sposito, Marcel Bellato;
- Amorim, Lilian;
- Behrouzi, Pariya;
- Bustos-Korts, Daniela;
- Fritsche-Neto, Roberto
Publication type:
Article
Transcriptional repression and enhancer decommissioning silence cell cycle genes in postmitotic tissues.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae203
By:
- Fogarty, Elizabeth A;
- Buchert, Elli M;
- Ma, Yiqin;
- Nicely, Ava B;
- Buttitta, Laura A
Publication type:
Article
A large-scale in vivo screen to investigate the roles of human genes in Drosophila melanogaster.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae188
By:
- Avila, Ashley;
- Paculis, Lily;
- Tascon, Roxana Gonzalez;
- Ramos, Belen;
- Jia, Dongyu
Publication type:
Article
Entomophthovirus: an insect-derived iflavirus that infects a behavior-manipulating fungal pathogen of dipterans.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae198
By:
- Coyle, Maxwell C;
- Elya, Carolyn N;
- Bronski, Michael J;
- Eisen, Michael B
Publication type:
Article
SoMarker: a genetic marker searching tool for Caenorhabditis elegans.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae197
By:
- Dai, Chuan-Yang;
- Zhang, Haobo;
- Zuryn, Steven
Publication type:
Article
Mutations in nuclear genes encoding mitochondrial ribosome proteins restore pollen fertility in S male-sterile maize.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae201
By:
- Wang, Yan;
- Williams-Carrier, Rosalind;
- Meeley, Robert;
- Fox, Timothy;
- Chamusco, Karen;
- Nashed, Mina;
- Hannah, L Curtis;
- Gabay-Laughnan, Susan;
- Barkan, Alice;
- Chase, Christine
Publication type:
Article
The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae193
By:
- Blanchard, Matthew W;
- Sigmon, John Sebastian;
- Brennan, Jennifer;
- Ahulamibe, Chidima;
- Allen, Michelle E;
- Ardery, Sam;
- Baric, Ralph S;
- Bell, Timothy A;
- Farrington, Joseph;
- Ciavatta, Dominic;
- Cisneros, Marta C Cruz;
- Drushal, Madison;
- Ferris, Martin T;
- Fry, Rebecca C;
- Gaines, Christiann;
- Gu, Bin;
- Heise, Mark T;
- Hock, Pablo;
- Hodges, Richard Austin;
- Hulgin, Mia
Publication type:
Article
DNA methylation analysis reveals local changes in resistant and susceptible soybean lines in response to Phytophthora sansomeana.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae191
By:
- DiBiase, Charlotte N;
- Cheng, Xi;
- Lee, Gwonjin;
- Moore, Richard C;
- McCoy, Austin G;
- Chilvers, Martin I;
- Sun, Lianjun;
- Wang, Dechun;
- Lin, Feng;
- Zhao, Meixia
Publication type:
Article
Comparative genomics of Metarhizium brunneum strains V275 and ARSEF 4556: unraveling intraspecies diversity.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae190
By:
- Kortsinoglou, Alexandra M;
- Wood, Martyn J;
- Myridakis, Antonis I;
- Andrikopoulos, Marios;
- Roussis, Andreas;
- Eastwood, Dan;
- Butt, Tariq;
- Kouvelis, Vassili N
Publication type:
Article
Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae189
By:
- Garcia, Jadran F;
- Figueroa-Balderas, Rosa;
- Comont, Gwenaëlle;
- Delmas, Chloé E L;
- Baumgartner, Kendra;
- Cantu, Dario
Publication type:
Article
Hypomorphic mutation in the large subunit of replication protein A affects mutagenesis by human APOBEC cytidine deaminases in yeast.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae196
By:
- Dennen, Matthew S;
- Kockler, Zachary W;
- Roberts, Steven A;
- Burkholder, Adam B;
- Klimczak, Leszek J;
- Gordenin, Dmitry A
Publication type:
Article
Genomic prediction of the performance of tropical doubled haploid maize lines under artificial Striga hermonthica (Del.) Benth. infestation.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae186
By:
- Kimutai, Joan J C;
- Makumbi, Dan;
- Burgueño, Juan;
- Pérez-Rodríguez, Paulino;
- Crossa, Jose;
- Gowda, Manje;
- Menkir, Abebe;
- Pacheco, Angela;
- Ifie, Beatrice E;
- Tongoona, Pangirayi;
- Danquah, Eric Y;
- Prasanna, Boddupalli M
Publication type:
Article
A hybrid genome assembly of the endangered aye-aye (Daubentonia madagascariensis).
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae185
By:
- Versoza, Cyril J;
- Pfeifer, Susanne P
Publication type:
Article
T and Z, partial seed coat patterning genes in common bean, provide insight into the structure and protein interactions of a plant MBW complex.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae184
By:
- McClean, Phillip E;
- Roy, Jayanta;
- Colbert, Christopher L;
- Osborne, Caroline;
- Lee, Rian;
- Miklas, Phillip N;
- Osorno, Juan M
Publication type:
Article
Loss of genetic variation and ancestral sex determination system in North American northern pike characterized by whole-genome resequencing.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae183
By:
- Johnson, Hollie A;
- Rondeau, Eric B;
- Sutherland, Ben J G;
- Minkley, David R;
- Leong, Jong S;
- Whitehead, Joanne;
- Despins, Cody A;
- Gowen, Brent E;
- Collyard, Brian J;
- Whipps, Christopher M;
- Farrell, John M;
- Koop, Ben F
Publication type:
Article
The role of uncertainty and negative feedback loops in the evolution of induced immune defenses.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae182
By:
- Asgari, Danial;
- Stewart, Alexander J;
- Meisel, Richard P
Publication type:
Article
Snow alga Sanguina aurantia as revealed through de novo genome assembly and annotation.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae181
By:
- Raymond, Breanna B;
- Guenzi-Tiberi, Pierre;
- Maréchal, Eric;
- Quarmby, Lynne M
Publication type:
Article
Genomic diversity and evolution of the Hawaiian Islands endemic Kokia (Malvaceae).
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae180
By:
- Kayal, Ehsan;
- Arick, Mark A;
- Hsu, Chuan-yu;
- Thrash, Adam;
- Yorkston, Mitsuko;
- Morden, Clifford W;
- Wendel, Jonathan F;
- Peterson, Daniel G;
- Grover, Corrinne E
Publication type:
Article
A comprehensive atlas of pig RNA editome across 23 tissues reveals RNA editing affecting interaction mRNA–miRNAs.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae178
By:
- Long, Jiajia;
- Liu, Weiwei;
- Fan, Xinhao;
- Yang, Yalan;
- Yang, Xiaogan;
- Tang, Zhonglin
Publication type:
Article
Genomics of natural populations: gene conversion events reveal selected genes within the inversions of Drosophila pseudoobscura.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae176
By:
- Schaeffer, Stephen W;
- Richards, Stephen;
- Fuller, Zachary L
Publication type:
Article
Cross-species transcriptomics reveals differential regulation of essential photosynthesis genes in Hirschfeldia incana.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae175
By:
- Garassino, Francesco;
- Luoni, Sofia Bengoa;
- Cumerlato, Tommaso;
- Marquez, Francisca Reyes;
- Harbinson, Jeremy;
- Aarts, Mark G M;
- Nijveen, Harm;
- Smit, Sandra
Publication type:
Article
Vitamin B5 is a context-dependent dietary regulator of nociception.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae174
By:
- Hamoudi, Zina;
- Leung, Calvin;
- Khuong, Thang Manh;
- Cooney, Gregory;
- Neely, G Gregory
Publication type:
Article
Pseudomolecule-scale genome assemblies of Drepanocaryum sewerzowii and Marmoritis complanata.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae172
By:
- Smit, Samuel J;
- Whitehead, Caragh;
- James, Sally R;
- Jeffares, Daniel C;
- Godden, Grant;
- Peng, Deli;
- Sun, Hang;
- Lichman, Benjamin R
Publication type:
Article
Segmentation-free measurement of locomotor frequency in Caenorhabditis elegans using image invariants.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae170
By:
- Ji, Hongfei;
- Chen, Dian;
- Fang-Yen, Christopher
Publication type:
Article
Revealing the evolutionary history and contemporary population structure of Pacific salmon in the Fraser River through genome resequencing.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae169
By:
- Christensen, Kris A;
- Flores, Anne-Marie;
- Sakhrani, Dionne;
- Biagi, Carlo A;
- Devlin, Robert H;
- Sutherland, Ben J G;
- Withler, Ruth E;
- Rondeau, Eric B;
- Koop, Ben F
Publication type:
Article
QTL discovery for agronomic and quality traits in diploid potato clones using PotatoMASH amplicon sequencing.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae164
By:
- Vexler, Lea;
- Leyva-Perez, Maria de la O;
- Konkolewska, Agnieszka;
- Clot, Corentin R;
- Byrne, Stephen;
- Griffin, Denis;
- Ruttink, Tom;
- Hutten, Ronald C B;
- Engelen, Christel;
- Visser, Richard G F;
- Prigge, Vanessa;
- Wagener, Silke;
- Lairy-Joly, Gisele;
- Driesprong, Jan-David;
- Sundmark, Ea Høegh Riis;
- Rookmaker, A Nico O;
- Eck, Herman J van;
- Milbourne, Dan
Publication type:
Article
Functional and regulatory diversification of Period genes responsible for circadian rhythm in vertebrates.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae162
By:
- Kwak, Jun Soung;
- León-Tapia, M Ángel;
- Diblasi, Celian;
- Manousi, Domniki;
- Grønvold, Lars;
- Sandvik, Guro Katrine;
- Saitou, Marie
Publication type:
Article
Correction to: Genetics of Bacteria: a call for papers.
Published in:
2024
Publication type:
Correction Notice
Genomic prediction of regional-scale performance in switchgrass (Panicum virgatum) by accounting for genotype-by-environment variation and yield surrogate traits.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae159
By:
- Tilhou, Neal W;
- Bonnette, Jason;
- Boe, Arvid R;
- Fay, Philip A;
- Fritschi, Felix B;
- Mitchell, Robert B;
- Rouquette, Francis M;
- Wu, Yanqi;
- Jastrow, Julie D;
- Ricketts, Michael;
- Maher, Shelley D;
- Juenger, Thomas E;
- Lowry, David B
Publication type:
Article
Highly contiguous genome assembly of Drosophila prolongata—a model for evolution of sexual dimorphism and male-specific innovations.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae155
By:
- Luecke, David;
- Luo, Yige;
- Krzystek, Halina;
- Jones, Corbin;
- Kopp, Artyom
Publication type:
Article
ONeSAMP 3.0: estimation of effective population size via single nucleotide polymorphism data from one population.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae153
By:
- Hong, Aaron;
- Cheek, Rebecca G;
- Silva, Suhashi Nihara De;
- Mukherjee, Kingshuk;
- Yooseph, Isha;
- Oliva, Marco;
- Heim, Mark;
- Funk, Chris W.;
- Tallmon, David;
- Boucher, Christina
Publication type:
Article
Chromosome-scale genome assembly of the hunt bumble bee, Bombus huntii Greene, 1860, a species of agricultural interest.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae160
By:
- Koch, Jonathan Berenguer Uhuad;
- Sim, Sheina B;
- Scheffler, Brian;
- Lozier, Jeffrey D;
- Geib, Scott M
Publication type:
Article

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