Works matching IS 21601836 AND DT 2022 AND VI 12 AND IP 11

Results: 40

Adding gene transcripts into genomic prediction improves accuracy and reveals sampling time dependence.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac258

By:

Perez, Bruno C.;
Bink, Marco C. A. M.;
Svenson, Karen L.;
Churchill, Gary A.;
Calus, Mario P. L.

Publication type:

Article

A TRiP RNAi screen to identify molecules necessary for Drosophila photoreceptor differentiation.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac257

By:

Rylee, Johnathan;
Mahato, Simpla;
Aldrich, John;
Bergh, Emma;
Sizemore, Brandon;
Feder, Lauren E.;
Grega, Shaun;
Helms, Kennedy;
Maar, Megan;
Britt, Steven G.;
Zelhof, Andrew C.

Publication type:

Article

Genomic novelty within a "great speciator" revealed by a high-quality reference genome of the collared kingfisher (Todiramphus chloris collaris).

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac260

By:

Eliason, Chad M.;
Hains, Taylor;
McCullough, Jenna;
Andersen, Michael J.;
Hackett, Shannon J.

Publication type:

Article

Correction to: Local genetic covariance between serum urate and kidney function estimated with Bayesian multitrait models.

Published in:: G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac259
Publication type:: Article

Early evolution and transmission of GII.P16-GII.2 norovirus in China.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac250

By:

Luqi Wang;
Lei Ji;
Hao Li;
Deshun Xu;
Liping Chen;
Peng Zhang;
Weibing Wang

Publication type:

Article

Prioritizing candidate eQTL causal genes in Arabidopsis using RANDOM FORESTS.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac255

By:

Hartanto, Margi;
Sami, Asif Ahmed;
de Ridder, Dick;
Nijveen, Harm

Publication type:

Article

Reference long-read isoform-aware transcriptomes of 4 human peripheral blood lymphocyte subsets.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac253

By:

Woolley, Cassandra R.;
Chariker, Julia H.;
Rouchka, Eric C.;
Ford, Easton E.;
Hudson, Elizabeth A.;
Waigel, Sabine J.;
Smith, Melissa L.;
Mitchell, Thomas C.

Publication type:

Article

SID-4/NCK-1 is important for dsRNA import in Caenorhabditis elegans.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac252

By:

Bhatia, Sonya;
Hunter, Craig P.

Publication type:

Article

Correction to: Austropuccinia psidii, causing myrtle rust, has a gigabase-sized genome shaped by transposable elements.

Published in:: G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac251
Publication type:: Article

NHR-23 and SPE-44 regulate distinct sets of genes during Caenorhabditis elegans spermatogenesis.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac256

By:

Ragle, James Matthew;
Morrison, Kayleigh N.;
Vo, An A.;
Johnson, Zoe E.;
Lopez, Javier Hernandez;
Rechtsteiner, Andreas;
Shakes, Diane C.;
Ward, Jordan D.

Publication type:

Article

Analysis of Cyp51 protein sequences shows 4 major Cyp51 gene family groups across fungi.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac249

By:

Celia-Sanchez, Brandi N.;
Mangum, Brandon;
Brewer, Marin;
Momany, Michelle

Publication type:

Article

Genetic screens identified dual roles of microtubule-associated serine threonine kinase and CREB within a single thermosensory neuron in the regulation of Caenorhabditis elegans thermotaxis behavior.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac248

By:

Shunji Nakano;
Airi Nakayama;
Hiroo Kuroyanagi;
Riku Yamashiro;
Yuki Tsukada;
Ikue Mori

Publication type:

Article

Comprehensive analysis of pathogen-responsive wheat NAC transcription factors: new candidates for crop improvement.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac247

By:

Vranic, Monika;
Perochon, Alexandre;
Benbow, Harriet;
Doohan, Fiona M.

Publication type:

Article

yEvo: experimental evolution in high school classrooms selects for novel mutations that impact clotrimazole resistance in Saccharomyces cerevisiae.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac246

By:

Taylor, Matthew Bryce;
Skophammer, Ryan;
Warwick, Alexa R.;
Geck, Renee C.;
Boyer, Josephine M.;
Students, yEvo;
MargauxWalson;
Large, Christopher R. L.;
Hickey, Angela Shang-Mei;
Rowley, Paul A.;
Dunham, Maitreya J.

Publication type:

Article

Genomic selection for resistance to mammalian bark stripping and associated chemical compounds in radiata pine.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac245

By:

Nantongo, Judith S.;
Potts, Brad M.;
Kla, Jaroslav;
Graham, Natalie J.;
Dungey, Heidi S.;
Fitzgerald, Hugh;
O'Reilly-Wapstra, Julianne M.

Publication type:

Article

NESM: a network embedding method for tumor stratification by integrating multi-omics data.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac243

By:

Feng Li;
Zhensheng Sun;
Jin-Xing Liu;
Junliang Shang;
Lingyun Dai;
Xikui Liu;
Yan Li

Publication type:

Article

A chromosome-level assembly of the widely used Rockefeller strain of Aedes aegypti, the yellow fever mosquito.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac242

By:

Fisher, Cera R.;
Wilson, Michael;
Scott, Jeffrey G.

Publication type:

Article

Comparative genomics reveals putative evidence for high-elevation adaptation in the American pika (Ochotona princeps).

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac241

By:

Sjodin, Bryson M. F.;
Russello, Michael A.

Publication type:

Article

Adaptation of the yeast gene knockout collection is near-perfectly predicted by fitness and diminishing return epistasis.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac240

By:

Persson, Karl;
Stenberg, Simon;
Tamás, Markus J.;
Warringer, Jonas

Publication type:

Article

Drosophila FMRP controls miR-276-mediated regulation of nejire mRNA for space-filling dendrite development.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac239

By:

Hui Li;
Gavis, Elizabeth R.

Publication type:

Article

Analyses of mutational patterns induced by formaldehyde and acetaldehyde reveal similarity to a common mutational signature.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac238

By:

Thapa, Mahanish J.;
Fabros, Reena M.;
Alasmar, Salma;
Kin Chan

Publication type:

Article

Gene flow biases population genetic inference of recombination rate.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac236

By:

Samuk, Kieran;
Noor, Mohamed A. F.

Publication type:

Article

Purifying selection enduringly acts on the sequence evolution of highly expressed proteins in Escherichia coli.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac235

By:

Atsushi Shibai;
Hazuki Kotani;
Natsue Sakata;
Chikara Furusawa;
Saburo Tsuru

Publication type:

Article

Draft genome of the lowland anoa (Bubalus depressicornis) and comparison with buffalo genome assemblies (Bovidae, Bubalina).

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac234

By:

Porrelli, Stefano;
Gerbault-Seureau, Michéle;
Rozzi, Roberto;
Chikhi, Rayan;
Curaudeau, Manon;
Ropiquet, Anne;
Hassanin, Alexandre

Publication type:

Article

PhaMMseqs: a new pipeline for constructing phage gene phamilies using MMseqs2.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac233

By:

Gauthier, Christian H.;
Cresawn, Steven G.;
Hatfull, Graham F.

Publication type:

Article

Transcription factors regulating the fate and developmental potential of a multipotent progenitor in Caenorhabditis elegans.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac232

By:

Soukup, Evan M.;
Bettinger, Jill C.;
Mathies, Laura D.

Publication type:

Article

Comparative studies of genomic and epigenetic factors influencing transcriptional variation in two insect species.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac230

By:

XinWu;
Bhatia, Neharika;
Grozinger, Christina M.;
Soojin V. Yi

Publication type:

Article

The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac223

By:

McKowen, J. Keller;
Avva, Satya V. S. P.;
Maharjan, Mukesh;
Duarte, Fabiana M.;
Tome, Jacob M.;
Judd, Julius;
Wood, Jamie L.;
Sunday Negedu;
Yunkai Dong;
Lis, John T.;
Hart, Craig M.

Publication type:

Article

Extracellular matrix regulation of stress response genes during larval development in Caenorhabditis elegans.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac221

By:

Chandler, Luke M.;
Choe, Keith P.

Publication type:

Article

Nebulous without white: annotated long-read genome assembly and CRISPR/Cas9 genome engineering in Drosophila nebulosa.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac231

By:

Sottolano, Christopher J.;
Revaitis, Nicole T.;
Geneva, Anthony J.;
Yakoby, Nir

Publication type:

Article

stuart: an R package for the curation of SNP genotypes from experimental crosses.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac219

By:

Bourdon, Marie;
Montagutelli, Xavier

Publication type:

Article

The Gallus gallus RJF reference genome reveals an MHCY haplotype organized in gene blocks that contain 107 loci including 45 specialized, polymorphic MHC class I loci, 41 C-type lectin-like loci, and other loci amid hundreds of transposable elements.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac218

By:

Goto, Ronald M.;
Warden, Charles D.;
Takashi Shiina;
Kazuyoshi Hosomichi;
Jibin Zhang;
Tae Hyuk Kang;
Xiwei Wu;
Glass, Marla C.;
Delany, Mary E.;
Miller, Marcia M.

Publication type:

Article

Bergerac strains of Caenorhabditis elegans revisited: expansion of Tc1 elements imposes a significant genomic and fitness cost.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac214

By:

Daigle, Austin T.;
Deiss, Thaddeus C.;
Melde, Robert H.;
Bergthorsson, Ulfar;
Katju, Vaishali

Publication type:

Article

A high-quality chromosome-level genome assembly of the bivalve mollusk Mactra veneriformis.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac229

By:

Yongxin Sun;
Xiangfeng Liu;
Xi Xie;
Yongan Bai;
Shuo Wang;
Weiming Teng;
Dacheng Li;
Hualin Li;
Zuoan Yu;
Ming Zhang;
Zunchun Zhou;
Xu Liu;
Hongtao Nie;
Shaojun Du;
Xiaodong Li;
Qi Li;
Qingzhi Wang

Publication type:

Article

Robust linear DNA degradation supports replication--initiation-defective mutants in Escherichia coli.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac228

By:

Rao, T. V. Pritha;
Kuzminov, Andrei

Publication type:

Article

An SNN retrocopy insertion upstream of GPR22 is associated with dark red coat color in Poodles.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac227

By:

Batcher, Kevin;
Varney, Scarlett;
Affolter, Verena K.;
Friedenberg, Steven G.;
Bannasch, Danika

Publication type:

Article

learnMET: an R package to apply machine learning methods for genomic prediction using multi-environment trial data.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac226

By:

Westhues, Cathy C.;
Simianer, Henner;
Beissinger, Timothy M.

Publication type:

Article

The future of fungi: threats and opportunities.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac224

By:

Case, Nicola T.;
Berman, Judith;
Blehert, David S.;
Cramer, Robert A.;
Cuomo, Christina;
Currie, Cameron R.;
Ene, Iuliana V.;
Fisher, Matthew C.;
Fritz-Laylin, Lillian K.;
Gerstein, Aleeza C.;
Glass, N. Louise;
Gow, Neil A. R.;
Gurr, Sarah J.;
Hittinger, Chris Todd;
Hohl, Tobias M.;
Iliev, Iliyan D.;
James, Timothy Y.;
Jin, Hailing;
Klein, Bruce S.;
Kronstad, James W.

Publication type:

Article

Characterizing phenotypic diversity of trehalose biosynthesis mutants in multiple wild strains of Saccharomyces cerevisiae.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac196

By:

Chen, Anqi;
Vargas-Smith, Jeremy;
Tapia, Hugo;
Gibney, Patrick A.

Publication type:

Article

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 11, p. 1, doi. 10.1093/g3journal/jkac163

By:

Deshpande, Rujuta;
Byoungchun Lee;
Grewal, Savraj S.

Publication type:

Article