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Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab394
By:
- Zou, Jennifer;
- Gopalakrishnan, Shyam;
- Parker, Clarissa C.;
- Nicod, Jerome;
- Mott, Richard;
- Na Cai;
- Lionikas, Arimantas;
- Davies, Robert W.;
- Palmer, Abraham A.;
- Flint, Jonathan
Publication type:
Article
Pvr and distinct downstream signaling factors are required for hemocyte spreading and epidermal wound closure at Drosophila larval wound sites.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab388
By:
- Chang-Ru Tsai;
- Yan Wang;
- Jacobson, Alec;
- Sankoorikkal, Niki;
- Chirinos, Josue D.;
- Burra, Sirisha;
- Makthal, Nishanth;
- Kumaraswami, Muthiah;
- Galko, Michael J.
Publication type:
Article
Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab387
By:
- Ta, Aaron C.;
- Lin-Chien Huang;
- McKeown, Caroline R.;
- Bestman, Jennifer E.;
- Van Keuren-Jensen, Kendall;
- Cline, Hollis T.
Publication type:
Article
Assemblies of the genomes of parasitic wasps using meta-assembly and scaffolding with genetic linkage.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab386
By:
- Wittmeyer, Kameron T.;
- Oppenheim, Sara J.;
- Hopper, Keith R.
Publication type:
Article
Massively parallel analysis of human 3' UTRs reveals that AU-rich element length and registration predict mRNA destabilization.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab404
By:
- Siegel, David A.;
- Le Tonqueze, Olivier;
- Biton, Anne;
- Zaitlen, Noah;
- Erle, David J.
Publication type:
Article
Genome-wide analysis of acute low salinity tolerance in the eastern oyster Crassostrea virginica and potential of genomic selection for trait improvement.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab368
By:
- McCarty, Alexandra J.;
- Allen Jr., Standish K.;
- Plough, Louis V.
Publication type:
Article
Natural variation in the transcriptional response of Drosophila melanogaster to oxidative stress.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab366
By:
- Ramnarine, Timothy J. S.;
- Grath, Sonja;
- Parsch, John
Publication type:
Article
An improved auxin-inducible degron system for fission yeast.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab393
By:
- Xiao-Ran Zhang;
- Lei Zhao;
- Fang Suo;
- Yadong Gao;
- Qingcui Wu;
- Xiangbing Qi;
- Li-Lin Du
Publication type:
Article
Identification of condition-specific biomarker systems in uterine cancer.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab392
By:
- Hickman, Allison R.;
- Yuqing Hang;
- Pauly, Rini;
- Feltus, Frank A.
Publication type:
Article
Genetic and genomic architecture in eight strains of the laboratory opossum Monodelphis domestica.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab389
By:
- Xiao Xiong;
- Samollow, Paul B.;
- Wenqi Cao;
- Metz, Richard;
- Chao Zhang;
- Leandro, Ana C.;
- VandeBerg, John L.;
- Xu Wang
Publication type:
Article
Efficient approaches for large-scale GWAS with genotype uncertainty.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab385
By:
- Jørsboe, Emil;
- Albrechtsen, Anders
Publication type:
Article
The misuse of distributional assumptions in functional class scoring gene-set and pathway analysis.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab365
By:
- Chi-Hsuan Ho;
- Yu-Jyun Huang;
- Ying-Ju Lai;
- Mukherjee, Rajarshi;
- Hsiao, Chuhsing Kate
Publication type:
Article
Genome-wide imputation using the practical haplotype graph in the heterozygous crop cassava.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab383
By:
- Long, Evan M.;
- Bradbury, Peter J.;
- Romay, M. Cinta;
- Buckler, Edward S.;
- Robbins, Kelly R.
Publication type:
Article
Mutation rate and spectrum in obligately outcrossing Caenorhabditis elegans mutation accumulation lines subjected to RNAi-induced knockdown of the mismatch repair gene msh-2.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab364
By:
- Katju, Vaishali;
- Konrad, Anke;
- Deiss, Thaddeus C.;
- Bergthorsson, Ulfar
Publication type:
Article
FrAnTK: a Frequency-based Analysis ToolKit for efficient exploration of allele sharing patterns in present-day and ancient genomic datasets.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab357
By:
- Moreno-Mayar, J. Víctor
Publication type:
Article
Genome-wide approaches delineate the additive, epistatic, and pleiotropic nature of variants controlling fatty acid composition in peanut (Arachis hypogaea L.).
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab382
By:
- Otyama, Paul I.;
- Chamberlin, Kelly;
- Ozias-Akins, Peggy;
- Graham, Michelle A.;
- Cannon, Ethalinda K. S.;
- Cannon, Steven B.;
- MacDonald, Gregory E.;
- Anglin, Noelle L.
Publication type:
Article
Loxl2 is a mediator of cardiac aging in Drosophila melanogaster, genetically examining the role of aging clock genes.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab381
By:
- Bouska, Mark J.;
- Hua Bai
Publication type:
Article
Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab380
By:
- Neale, David B.;
- Zimin, Aleksey V.;
- Zaman, Sumaira;
- Scott, Alison D.;
- Shrestha, Bikash;
- Workman, Rachael E.;
- Puiu, Daniela;
- Allen, Brian J.;
- Moore, Zane J.;
- Sekhwal, Manoj K.;
- De La Torre, Amanda R.;
- McGuire, Patrick E.;
- Burns, Emily;
- Timp, Winston;
- Wegrzyn, Jill L.;
- Salzberg, Steven L.
Publication type:
Article
Transcriptional profile and chromatin accessibility in zebrafish melanocytes and melanoma tumors.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab379
By:
- Kramer, Eva T.;
- Godoy, Paula M.;
- Kaufman, Charles K.
Publication type:
Article
Genomic prediction of strawberry resistance to postharvest fruit decay caused by the fungal pathogen Botrytis cinerea.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab378
By:
- Petrasch, Stefan;
- Mesquida-Pesci, Saskia D.;
- Pincot, Dominique D. A.;
- Feldmann, Mitchell J.;
- López, Cindy M.;
- Famula, Randi;
- Hardigan, Michael A.;
- Cole, Glenn S.;
- Knapp, Steven J.;
- Blanco-Ulate, Barbara
Publication type:
Article
Filling the gaps in Leishmania naiffi and Leishmania guyanensis genome plasticity.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab377
By:
- Patiño, Luz H.;
- Muñoz, Marina;
- Pavia, Paula;
- Muskus, Carlos;
- Shaban, Maryia;
- Paniz-Mondolfi, Alberto;
- David Ramírez, Juan
Publication type:
Article
Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut (Reinhardtius hippoglossoides).
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab376
By:
- Ferchaud, Anne-Laure;
- Mérot, Claire;
- Normandeau, Eric;
- Ragoussis, Jiannis;
- Babin, Charles;
- Djambazian, Haig;
- Bérubé, Pierre;
- Audet, Céline;
- Treble, Margaret;
- Walkusz, Wojciech;
- Bernatchez, Louis
Publication type:
Article
Diet-induced changes in titer support a discrete response of Wolbachia-associated plastic recombination in Drosophila melanogaster.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab375
By:
- Mostoufi, Sabrina L.;
- Singh, Nadia D.
Publication type:
Article
The expression of Drosophila melanogaster Hox gene Ultrabithorax is not overtly regulated by the intronic long noncoding RNA lncRNA:PS4 in a wild-type genetic background.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab374
By:
- Hermann, Anita;
- Kosman, Dave;
- McGinnis, William;
- Tour, Ella
Publication type:
Article
A de novo genome assembly and annotation of the southern flying squirrel (Glaucomys volans).
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab373
By:
- Wolf, Jesse F.;
- Bowman, Jeff;
- Keobouasone, Sonesinh;
- Taylor, Rebecca S.;
- Wilson, Paul J.
Publication type:
Article
Sexual dimorphism and the effect of wild introgressions on recombination in cassava (Manihot esculenta Crantz) breeding germplasm.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab372
By:
- Chan, Ariel W.;
- Villwock, Seren S.;
- Williams, Amy L.;
- Jannink, Jean-Luc
Publication type:
Article
Application of RNA subcellular fraction estimation method to explore RNA localization regulation.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab371
By:
- Xiaomin Dai;
- Yangmengjie Li;
- Weizhen Liu;
- Xiuqi Pan;
- Chenyue Guo;
- Xiaojing Zhao;
- Jingwen Lv;
- Haixin Lei;
- Liye Zhang
Publication type:
Article
Optimization of BSA-seq experiment for QTL mapping.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab370
By:
- Likun Huang;
- Weiqi Tang;
- Weiren Wu
Publication type:
Article
High-resolution in situ analysis of Cas9 germline transcript distributions in gene-drive Anopheles mosquitoes.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab369
By:
- Terradas, Gerard;
- Hermann, Anita;
- James, Anthony A.;
- McGinnis, William;
- Bier, Ethan
Publication type:
Article
The power of genomic estimated breeding values for selection when using a finite population size in genetic improvement of tetraploid potato.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab362
By:
- Selga, Catja;
- Reslow, Fredrik;
- Pérez-Rodríguez, Paulino;
- Ortiz, Rodomiro
Publication type:
Article
Identification of a novel Candida metapsilosis isolate reveals multiple hybridization events.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab367
By:
- O'Brien, Caoimhe E.;
- Bing Zhai;
- Ola, Mihaela;
- Bergin, Sean A.;
- Cinnéide, Eoin Ó.;
- O'Connor, Ísla;
- Rolling, Thierry;
- Miranda, Edwin;
- Babady, N. Esther;
- Hohl, Tobias M.;
- Butler, Geraldine
Publication type:
Article
Accuracies of genomic predictions for disease resistance of striped catfish to Edwardsiella ictaluri using artificial intelligence algorithms.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab361
By:
- Nguyen Thanh Vu;
- Tran Huu Phuc;
- Kim Thi Phuong Oanh;
- Nguyen Van Sang;
- Trinh Thi Trang;
- Nguyen Hong Nguyen
Publication type:
Article
Suppression of cdc13-2-associated senescence by pif1-m2 requires Ku-mediated telomerase recruitment.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab360
By:
- Fekete-Szücs, Enikő;
- Rosas Bringas, Fernando R.;
- Stinus, Sonia;
- Chang, Michael
Publication type:
Article
De novo whole-genome assembly of Chrysanthemum makinoi, a key wild chrysanthemum.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab358
By:
- van Lieshout, Natascha;
- van Kaauwen, Martijn;
- Kodde, Linda;
- Arens, Paul;
- Smulders, Marinus J. M.;
- Visser, Richard G. F.;
- Finkers, Richard
Publication type:
Article
Genomic studies with preselected markers reveal dominance effects influencing growth traits in Eucalyptus nitens.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab363
By:
- Thumma, Bala R.;
- Joyce, Kelsey R.;
- Jacobs, Andrew
Publication type:
Article
A Drosophila RNAi screen reveals conserved glioblastoma-related adhesion genes that regulate collective cell migration.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab356
By:
- Kotian, Nirupama;
- Troike, Katie M.;
- Curran, Kristen N.;
- Lathia, Justin D.;
- McDonald, Jocelyn A.
Publication type:
Article
Genomics analysis of hexanoic acid exposure in Drosophila species.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab354
By:
- Drum, Zachary A.;
- Lanno, Stephen M.;
- Gregory, Sara M.;
- Shimshak, Serena J.;
- Ahamed, Mukshud;
- Barr, Will;
- Bekele, Bethlehem;
- Biester, Alison;
- Castro, Colleen;
- Connolly, Lauren;
- DelGaudio, Nicole;
- Humphrey, William;
- Karimi, Helen;
- Karolczak, Sophie;
- Lawrence, Tay-Shaun;
- McCracken, Andrew;
- Miller-Medzon, Noah;
- Murphy, Leah;
- Park, Cameron;
- Sojeong Park
Publication type:
Article
RNAseq-based gene expression profiling of the Anopheles funestus pyrethroid-resistant strain FUMOZ highlights the predominant role of the duplicated CYP6P9a/b cytochrome P450s.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab352
By:
- Wondji, Charles S.;
- Hearn, Jack;
- Irving, Helen;
- Wondji, Murielle J.;
- Weedall, Gareth
Publication type:
Article
Diploid genome assembly of Kluyveromyces marxianus NRRL Y-50883 (SLP1).
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab347
By:
- Gómez-Márquez, Carolina;
- Sandoval-Nuñez, Dania;
- Gschaedler, Anne;
- Romero-Gutiérrez, Teresa;
- Amaya-Delgado, Lorena;
- Alejandro Morales, J.
Publication type:
Article
Erratum to: High-quality genome assembly of the soybean fungal pathogen Cercospora kikuchii.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab323
Publication type:
Article

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