Works matching IS 20571577 AND DT 2023 AND VI 9 AND IP 1

Results: 46

Genome evolution of dengue virus serotype 1 under selection by Wolbachia pipientis in Aedes aegypti mosquitoes.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead016
By:
- Duong Thi Hue Kien;
- Edenborough, Kathryn;
- da Silva Goncalves, Daniela;
- Tran Thuy Vi;
- Casagrande, Etiene;
- Huynh Thi Le Duyen;
- Vo Thi Long;
- Le Thi Dui;
- Vu Thi Tuyet Nhu;
- Nguyen Thi Giang;
- Huynh Thi Xuan Trang;
- Lee, Elvina;
- Donovan-Banfeld, I’ah;
- Huynh Thi Thuy Van;
- Nguyen Minh Nguyet;
- Nguyen Thanh Phong;
- Nguyen Van Vinh Chau;
- Wills, Bridget;
- Yacoub, Sophie;
- Flores, Heather
Publication type:
Article
Cell-to-cell transmission promotes the emergence of double-drug resistance.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead017
By:
- Saeki, Koichi;
- Sasaki, Akira
Publication type:
Article
An advanced sequence clustering and designation workfow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead013
By:
- Santos, Pauline Dianne;
- Günther, Anne;
- Keller, Markus;
- Homeier-Bachmann, Timo;
- Groschup, Martin H.;
- Beer, Martin;
- Höper, Dirk;
- Ziegler, Ute
Publication type:
Article
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead028
By:
- Didelot, Xavier;
- Franceschi, Vinicius;
- Frost, Simon D. W.;
- Dennis, Ann;
- Volz, Erik M.
Publication type:
Article
From components to communities: bringing network science to clustering for molecular epidemiology.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead026
By:
- Liu, Molly;
- Chato, Connor;
- Poon, Art F. Y.
Publication type:
Article
Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead025
By:
- Makori, Timothy O.;
- Bargul, Joel L.;
- Lambisia, Arnold W.;
- Mwanga, Mike J.;
- Murunga, Nickson;
- de Laurent, Zaydah R.;
- Lewa, Clement S.;
- Mutunga, Martin;
- Kellam, Paul;
- Cotten, Matthew;
- James Nokes, D.;
- Phan, My;
- Agoti, Charles N.
Publication type:
Article
Non-structural genes of novel lemur adenoviruses reveal codivergence of virus and host.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead024
By:
- Veith, Talitha;
- Bleicker, Tobias;
- Eschbach-Bludau, Monika;
- Brünink, Sebastian;
- Mühlemann, Barbara;
- Schneider, Julia;
- Beheim-Schwarzbach, Jorn̈;
- Jacques Rakotondranary, S.;
- Ratovonamana, Yedidya R.;
- Tsagnangara, Cedric;
- Ernest, Refaly;
- Randriantafka, Faly;
- Sommer, Simone;
- Stetter, Nadine;
- Jones, Terry C.;
- Drosten, Christian;
- Ganzhorn, Jörg U.;
- Corman, Victor M.
Publication type:
Article
Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013–2022).
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead023
By:
- Lambisia, Arnold W.;
- Makori, Timothy O.;
- Mutunga, Martin;
- Cheruiyot, Robinson;
- Murunga, Nickson;
- Quick, Joshua;
- Githinji, George;
- James Nokes, D.;
- Houldcroft, Charlotte J.;
- Agoti, Charles N.
Publication type:
Article
MutaGAN: A sequence-to-sequence GAN framework to predict mutations of evolving protein populations.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead022
By:
- Berman, Daniel S.;
- Howser, Craig;
- Mehoke, Thomas;
- Ernlund, Amanda W.;
- Evans, Jared D.
Publication type:
Article
Semi-infectious particles contribute substantially to infuenza virus within-host dynamics when infection is dominated by spatial structure.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead020
By:
- Farrell, Alex;
- Phan, Tin;
- Brooke, Christopher B.;
- Koelle, Katia;
- Ke, Ruian
Publication type:
Article
Viral intra-host evolutionary dynamics revealed via serial passage of Japanese encephalitis virus in vitro.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac103
By:
- Bangyao Sun;
- Ming Ni;
- Haizhou Liu;
- Di Liu
Publication type:
Article
The hidden diversity of ancient bornaviral sequences from X and P genes in vertebrate genomes.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead038
By:
- Garcia, Bea Clarise B.;
- Mukai, Yahiro;
- Tomonaga, Keizo;
- Horie, Masayuki
Publication type:
Article
Rabbit haemorrhagic disease virus 2 from Singapore 2020 outbreak revealed an Australian recombinant variant.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead029
By:
- Koh, Eileen Y.;
- Ong, Jasmine;
- Yifan Wang;
- Xinyu Toh;
- Fernandez, Charlene Judith;
- Taoqi Huangfu;
- Hall, Robyn N.;
- Toh, Steffe;
- Lim, Kelvin;
- Sng, Wendy;
- Hwee Ping Lim;
- Ho, Kelvin;
- Siow Foong Chang;
- Yap, Him Hoo
Publication type:
Article
Selective events at individual sites underlie the evolution of monkeypox virus clades.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead031
By:
- Molteni, Cristian;
- Forni, Diego;
- Cagliani, Rachele;
- Arrigoni, Federica;
- Pozzoli, Uberto;
- De Gioia, Luca;
- Sironi, Manuela
Publication type:
Article
Mutual information networks reveal evolutionary relationships within the infuenza A virus polymerase.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead037
By:
- Arcos, Sarah;
- Han, Alvin X.;
- te Velthuis, Aartjan J. W.;
- Russell, Colin A.;
- Lauring, Adam S.
Publication type:
Article
Variation within major internal repeats of KSHV in vivo.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead034
By:
- Santiago, Jan Clement;
- Westfall, Dylan H.;
- Adams, Scott V.;
- Okuku, Fred;
- Phipps, Warren;
- Mullins, James I.
Publication type:
Article
Mutation rate, selection, and epistasis inferred from RNA virus haplotypes via neural posterior estimation.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead033
By:
- Caspi, Itamar;
- Meir, Moran;
- Nun, Nadav Ben;
- Rass, Reem Abu;
- Yakhini, Uri;
- Stern, Adi;
- Ram, Yoav
Publication type:
Article
Recombination smooths the time signal disrupted by latency in within-host HIV phylogenies.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead032
By:
- Castro, Lauren A.;
- Leitner, Thomas;
- Romero-Severson, Ethan
Publication type:
Article
Evolution of anelloviruses from a circovirus-like ancestor through gradual augmentation of the jelly-roll capsid protein.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead035
By:
- Butkovic, Anamarija;
- Kraberger, Simona;
- Smeele, Zoe;
- Martin, Darren P.;
- Schmidlin, Kara;
- Fontenele, Rafaela S.;
- Shero, Michelle R.;
- Beltran, Roxanne S.;
- Kirkham, Amy L.;
- Aleamotu’a, Maketalena;
- Burns, Jennifer M.;
- Koonin, Eugene V.;
- Varsani, Arvind;
- Krupovic, Mart
Publication type:
Article
Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead030
By:
- Mhango, Chimwemwe;
- Banda, Akuzike;
- Chinyama, End;
- Mandolo, Jonathan J.;
- Kumwenda, Orpha;
- Malamba-Banda, Chikondi;
- Barnes, Kayla G.;
- Kumwenda, Benjamin;
- Jambo, Kondwani C.;
- Donato, Celeste M.;
- Esona, Mathew D.;
- Mwangi, Peter N.;
- Steele, A. Duncan;
- Iturriza-Gomara, Miren;
- Cunliffe, Nigel A.;
- Ndze, Valentine N.;
- Kamng’ona, Arox W.;
- Dennis, Francis E.;
- Nyaga, Martin M.;
- Chaguza, Chrispin
Publication type:
Article
Correction to: Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea.
Published in:
2023
Publication type:
Correction Notice
Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead019
By:
- Zehr, Jordan D;
- Kosakovsky Pond, Sergei L;
- Millet, Jean K;
- Olarte-Castillo, Ximena A;
- Lucaci, Alexander G;
- Shank, Stephen D;
- Ceres, Kristina M;
- Choi, Annette;
- Whittaker, Gary R;
- Goodman, Laura B;
- Stanhope, Michael J
Publication type:
Article
Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead018
By:
- Orf, Gregory S;
- Perez, Lester J;
- Meyer, Todd V;
- Luk, Ka-Cheung;
- Forberg, Kenn;
- Rodgers, Mary A;
- Hadji, Abbas;
- James, Linda;
- Mampunza, Samuel;
- Achari, Asmeeta;
- Yu, Guixia;
- Federman, Scot;
- Chiu, Charles Y;
- McArthur, Carole A;
- Cloherty, Gavin A;
- Berg, Michael G
Publication type:
Article
Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in influenza A virus from North American swine.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead015
By:
- Hufnagel, David E;
- Young, Katharine M;
- Arendsee, Zebulun W;
- Gay, L Claire;
- Caceres, C Joaquin;
- Rajão, Daniela S;
- Perez, Daniel R;
- Vincent Baker, Amy L;
- Anderson, Tavis K
Publication type:
Article
H9N2 avian influenza virus dispersal along Bangladeshi poultry trading networks.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead014
By:
- Carnegie, L;
- Hasan, M;
- Mahmud, R;
- Hoque, M A;
- Debnath, N;
- Uddin, M H;
- Lewis, N S;
- Brown, I;
- Essen, S;
- Giasuddin, Md;
- Pfeiffer, D U;
- Samad, M A;
- Biswas, P;
- Raghwani, J;
- Fournié, G;
- Hill, S C
Publication type:
Article
Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead007
By:
- Robert, Alexis;
- Tsui Lok Hei, Joseph;
- Watson, Conall H;
- Gsell, Pierre-Stéphane;
- Hall, Yper;
- Rambaut, Andrew;
- Longini Jr., Ira M;
- Sakoba, Keïta;
- Kucharski, Adam J;
- Touré, Alhassane;
- Danmadji Nadlaou, Sévérine;
- Saidou Barry, Mamadou;
- Fofana, Thierno Oumar;
- Lansana Kaba, Ibrahima;
- Sylla, Lansana;
- Diaby, Mohamed Lamine;
- Soumah, Ousmane;
- Diallo, Abdourahime;
- Niare, Amadou;
- Diallo, Abdourahamane
Publication type:
Article
Limited cross-species virus transmission in a spatially restricted coral reef fish community.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead011
By:
- Costa, Vincenzo A;
- Bellwood, David R;
- Mifsud, Jonathon C O;
- Van Brussel, Kate;
- Geoghegan, Jemma L;
- Holmes, Edward C;
- Harvey, Erin
Publication type:
Article
Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead010
By:
- Layan, Maylis;
- Müller, Nicola F;
- Dellicour, Simon;
- De Maio, Nicola;
- Bourhy, Hervé;
- Cauchemez, Simon;
- Baele, Guy
Publication type:
Article
HexSE: Simulating evolution in overlapping reading frames.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead009
By:
- Muñoz-Baena, Laura;
- Wade, Kaitlyn E;
- Poon, Art F Y
Publication type:
Article
Phylodynamics of deer tick virus in North America.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead008
By:
- McMinn, Rebekah J;
- Langsjoen, Rose M;
- Bombin, Andrei;
- Robich, Rebecca M;
- Ojeda, Erick;
- Normandin, Erica;
- Goethert, Heidi K;
- Lubelczyk, Charles B;
- Schneider, Elizabeth;
- Cosenza, Danielle;
- Meagher, Molly;
- Prusinski, Melissa A;
- Sabeti, Pardis C;
- Smith, Robert P;
- Telford III, Sam R;
- Piantadosi, Anne;
- Ebel, Gregory D
Publication type:
Article
A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead012
By:
- Ashall, James;
- Shah, Sonal;
- Biggs, Joseph R;
- Chang, Jui-Ning R;
- Jafari, Yalda;
- Brady, Oliver J;
- Mai, Huynh Kim;
- Lien, Le Thuy;
- Do Thai, Hung;
- Nguyen, Hien Anh Thi;
- Anh, Dang Duc;
- Iwasaki, Chihiro;
- Kitamura, Noriko;
- Van Loock, Marnix;
- Herrera-Taracena, Guillermo;
- Rasschaert, Freya;
- Van Wesenbeeck, Liesbeth;
- Yoshida, Lay-Myint;
- Hafalla, Julius Clemence R;
- Hue, Stephane
Publication type:
Article
Evolutionary dynamics of respiratory syncytial virus in Buenos Aires: Viral diversity, migration, and subgroup replacement.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead006
By:
- Goya, Stephanie;
- Lucion, Maria Florencia;
- Shilts, Meghan H;
- Juárez, María del Valle;
- Gentile, Angela;
- Mistchenko, Alicia S;
- Viegas, Mariana;
- Das, Suman R
Publication type:
Article
Emergence and pandemic spread of small ruminant lentiviruses.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead005
By:
- Carrozza, Maria-Luisa;
- Niewiadomska, Anna-Maria;
- Mazzei, Maurizio;
- Abi-Said, Mounir R;
- Hué, Stéphane;
- Hughes, Joseph;
- Gatseva, Anna;
- Gifford, Robert J
Publication type:
Article
Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead004
By:
- Braun, Katarina M;
- Haddock III, Luis A;
- Crooks, Chelsea M;
- Barry, Gabrielle L;
- Lalli, Joseph;
- Neumann, Gabriele;
- Watanabe, Tokiko;
- Imai, Masaki;
- Yamayoshi, Seiya;
- Ito, Mutsumi;
- Moncla, Louise H;
- Koelle, Katia;
- Kawaoka, Yoshihiro;
- Friedrich, Thomas C
Publication type:
Article
Virus-induced interference as a means for accelerating fitness-based selection of cyprinid herpesvirus 3 single-nucleotide variants in vitro and in vivo.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead003
By:
- Gao, Yuan;
- Sridhar, Arun;
- Bernard, Noah;
- He, Bo;
- Zhang, Haiyan;
- Pirotte, Sébastien;
- Desmecht, Salomé;
- Vancsok, Catherine;
- Boutier, Maxime;
- Suárez, Nicolás M;
- Davison, Andrew J;
- Donohoe, Owen;
- Vanderplasschen, Alain F C
Publication type:
Article
Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead002
By:
- Porter, Ashleigh F;
- Purcell, Damian F J;
- Howden, Benjamin P;
- Duchene, Sebastian
Publication type:
Article
Anellovirus evolution during long-term chronic infection.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead001
By:
- Kaczorowska, Joanna;
- Timmerman, Anne L;
- Deijs, Martin;
- Kinsella, Cormac M;
- Bakker, Margreet;
- van der Hoek, Lia
Publication type:
Article
Discovery of novel Mamastroviruses in Bactrian camels and dromedaries reveals complex recombination history.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac125
By:
- Qureshi, Muhammad I;
- Worthington, Brian M;
- Liu, Yongmei;
- Cheung, William Y.-M;
- Su, Shuo;
- Zheng, Zuoyi;
- Li, Lifeng;
- Lam, Tommy T -Y;
- Guan, Yi;
- Zhu, Huachen
Publication type:
Article
Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac124
By:
- Mifsud, Jonathon C O;
- Costa, Vincenzo A;
- Petrone, Mary E;
- Marzinelli, Ezequiel M;
- Holmes, Edward C;
- Harvey, Erin
Publication type:
Article
Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac123
By:
- Olo Ndela, Eric;
- Roux, Simon;
- Henke, Christian;
- Sczyrba, Alexander;
- Sime Ngando, Télesphore;
- Varsani, Arvind;
- Enault, François
Publication type:
Article
Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac122
By:
- Kozakiewicz, Christopher P;
- Burridge, Christopher P;
- Lee, Justin S;
- Kraberger, Simona J;
- Fountain-Jones, Nicholas M;
- Fisher, Robert N;
- Lyren, Lisa M;
- Jennings, Megan K;
- Riley, Seth P D;
- Serieys, Laurel E K;
- Craft, Meggan E;
- Funk, W Chris;
- Crooks, Kevin R;
- VandeWoude, Sue;
- Carver, Scott
Publication type:
Article
Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac121
By:
- Su, Yvonne C F;
- Ma, Jordan Z J;
- Ou, Tey Putita;
- Pum, Leakhena;
- Krang, Sidonn;
- Raftery, Philomena;
- Kinzer, Michael H;
- Bohl, Jennifer;
- Ieng, Vanra;
- Kab, Vannda;
- Patel, Sarika;
- Sar, Borann;
- Ying, Wong Foong;
- Jayakumar, Jayanthi;
- Horm, Viseth Srey;
- Boukli, Narjis;
- Yann, Sokhoun;
- Troupin, Cecile;
- Heang, Vireak;
- Garcia-Rivera, Jose A
Publication type:
Article
bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac120
By:
- Ferreira, Roux-Cil;
- Wong, Emmanuel;
- Poon, Art F Y
Publication type:
Article
Reversions to consensus are positively selected in HIV-1 and bias substitution rate estimates.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac118
By:
- Druelle, Valentin;
- Neher, Richard A
Publication type:
Article
Long-term host–pathogen evolution of endogenous beta- and gammaretroviruses in mouse lemurs with little evidence of recent retroviral introgression.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac117
By:
- Kessler, Sharon E;
- Tsangaras, Kyriakos;
- Rasoloharijaona, Solofonirina;
- Radespiel, Ute;
- Greenwood, Alex D
Publication type:
Article
Polymorphisms predicting phylogeny in hepatitis B virus.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac116
By:
- Lourenço, José;
- McNaughton, Anna L;
- Pley, Caitlin;
- Obolski, Uri;
- Gupta, Sunetra;
- Matthews, Philippa C
Publication type:
Article