Works matching IS 20571577 AND DT 2023 AND VI 9 AND IP 1

Results: 46

Genome evolution of dengue virus serotype 1 under selection by Wolbachia pipientis in Aedes aegypti mosquitoes.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead016

By:

Duong Thi Hue Kien;
Edenborough, Kathryn;
da Silva Goncalves, Daniela;
Tran Thuy Vi;
Casagrande, Etiene;
Huynh Thi Le Duyen;
Vo Thi Long;
Le Thi Dui;
Vu Thi Tuyet Nhu;
Nguyen Thi Giang;
Huynh Thi Xuan Trang;
Lee, Elvina;
Donovan-Banfeld, I’ah;
Huynh Thi Thuy Van;
Nguyen Minh Nguyet;
Nguyen Thanh Phong;
Nguyen Van Vinh Chau;
Wills, Bridget;
Yacoub, Sophie;
Flores, Heather

Publication type:

Article

Cell-to-cell transmission promotes the emergence of double-drug resistance.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead017

By:

Saeki, Koichi;
Sasaki, Akira

Publication type:

Article

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013–2022).

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead023

By:

Lambisia, Arnold W.;
Makori, Timothy O.;
Mutunga, Martin;
Cheruiyot, Robinson;
Murunga, Nickson;
Quick, Joshua;
Githinji, George;
James Nokes, D.;
Houldcroft, Charlotte J.;
Agoti, Charles N.

Publication type:

Article

Model design for nonparametric phylodynamic inference and applications to pathogen surveillance.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead028

By:

Didelot, Xavier;
Franceschi, Vinicius;
Frost, Simon D. W.;
Dennis, Ann;
Volz, Erik M.

Publication type:

Article

From components to communities: bringing network science to clustering for molecular epidemiology.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead026

By:

Liu, Molly;
Chato, Connor;
Poon, Art F. Y.

Publication type:

Article

Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead025

By:

Makori, Timothy O.;
Bargul, Joel L.;
Lambisia, Arnold W.;
Mwanga, Mike J.;
Murunga, Nickson;
de Laurent, Zaydah R.;
Lewa, Clement S.;
Mutunga, Martin;
Kellam, Paul;
Cotten, Matthew;
James Nokes, D.;
Phan, My;
Agoti, Charles N.

Publication type:

Article

Non-structural genes of novel lemur adenoviruses reveal codivergence of virus and host.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead024

By:

Veith, Talitha;
Bleicker, Tobias;
Eschbach-Bludau, Monika;
Brünink, Sebastian;
Mühlemann, Barbara;
Schneider, Julia;
Beheim-Schwarzbach, Jorn̈;
Jacques Rakotondranary, S.;
Ratovonamana, Yedidya R.;
Tsagnangara, Cedric;
Ernest, Refaly;
Randriantafka, Faly;
Sommer, Simone;
Stetter, Nadine;
Jones, Terry C.;
Drosten, Christian;
Ganzhorn, Jörg U.;
Corman, Victor M.

Publication type:

Article

An advanced sequence clustering and designation workfow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead013

By:

Santos, Pauline Dianne;
Günther, Anne;
Keller, Markus;
Homeier-Bachmann, Timo;
Groschup, Martin H.;
Beer, Martin;
Höper, Dirk;
Ziegler, Ute

Publication type:

Article

MutaGAN: A sequence-to-sequence GAN framework to predict mutations of evolving protein populations.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead022

By:

Berman, Daniel S.;
Howser, Craig;
Mehoke, Thomas;
Ernlund, Amanda W.;
Evans, Jared D.

Publication type:

Article

Semi-infectious particles contribute substantially to infuenza virus within-host dynamics when infection is dominated by spatial structure.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead020

By:

Farrell, Alex;
Phan, Tin;
Brooke, Christopher B.;
Koelle, Katia;
Ke, Ruian

Publication type:

Article

Viral intra-host evolutionary dynamics revealed via serial passage of Japanese encephalitis virus in vitro.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac103

By:

Bangyao Sun;
Ming Ni;
Haizhou Liu;
Di Liu

Publication type:

Article

The hidden diversity of ancient bornaviral sequences from X and P genes in vertebrate genomes.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead038

By:

Garcia, Bea Clarise B.;
Mukai, Yahiro;
Tomonaga, Keizo;
Horie, Masayuki

Publication type:

Article

Rabbit haemorrhagic disease virus 2 from Singapore 2020 outbreak revealed an Australian recombinant variant.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead029

By:

Koh, Eileen Y.;
Ong, Jasmine;
Yifan Wang;
Xinyu Toh;
Fernandez, Charlene Judith;
Taoqi Huangfu;
Hall, Robyn N.;
Toh, Steffe;
Lim, Kelvin;
Sng, Wendy;
Hwee Ping Lim;
Ho, Kelvin;
Siow Foong Chang;
Yap, Him Hoo

Publication type:

Article

Evolution of anelloviruses from a circovirus-like ancestor through gradual augmentation of the jelly-roll capsid protein.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead035

By:

Butkovic, Anamarija;
Kraberger, Simona;
Smeele, Zoe;
Martin, Darren P.;
Schmidlin, Kara;
Fontenele, Rafaela S.;
Shero, Michelle R.;
Beltran, Roxanne S.;
Kirkham, Amy L.;
Aleamotu’a, Maketalena;
Burns, Jennifer M.;
Koonin, Eugene V.;
Varsani, Arvind;
Krupovic, Mart

Publication type:

Article

Mutual information networks reveal evolutionary relationships within the infuenza A virus polymerase.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead037

By:

Arcos, Sarah;
Han, Alvin X.;
te Velthuis, Aartjan J. W.;
Russell, Colin A.;
Lauring, Adam S.

Publication type:

Article

Variation within major internal repeats of KSHV in vivo.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead034

By:

Santiago, Jan Clement;
Westfall, Dylan H.;
Adams, Scott V.;
Okuku, Fred;
Phipps, Warren;
Mullins, James I.

Publication type:

Article

Mutation rate, selection, and epistasis inferred from RNA virus haplotypes via neural posterior estimation.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead033

By:

Caspi, Itamar;
Meir, Moran;
Nun, Nadav Ben;
Rass, Reem Abu;
Yakhini, Uri;
Stern, Adi;
Ram, Yoav

Publication type:

Article

Recombination smooths the time signal disrupted by latency in within-host HIV phylogenies.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead032

By:

Castro, Lauren A.;
Leitner, Thomas;
Romero-Severson, Ethan

Publication type:

Article

Selective events at individual sites underlie the evolution of monkeypox virus clades.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead031

By:

Molteni, Cristian;
Forni, Diego;
Cagliani, Rachele;
Arrigoni, Federica;
Pozzoli, Uberto;
De Gioia, Luca;
Sironi, Manuela

Publication type:

Article

Comparative whole genome analysis reveals re-emergence of human Wa-like and DS-1-like G3 rotaviruses after Rotarix vaccine introduction in Malawi.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead030

By:

Mhango, Chimwemwe;
Banda, Akuzike;
Chinyama, End;
Mandolo, Jonathan J.;
Kumwenda, Orpha;
Malamba-Banda, Chikondi;
Barnes, Kayla G.;
Kumwenda, Benjamin;
Jambo, Kondwani C.;
Donato, Celeste M.;
Esona, Mathew D.;
Mwangi, Peter N.;
Steele, A. Duncan;
Iturriza-Gomara, Miren;
Cunliffe, Nigel A.;
Ndze, Valentine N.;
Kamng’ona, Arox W.;
Dennis, Francis E.;
Nyaga, Martin M.;
Chaguza, Chrispin

Publication type:

Article

Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead019

By:

Zehr, Jordan D;
Kosakovsky Pond, Sergei L;
Millet, Jean K;
Olarte-Castillo, Ximena A;
Lucaci, Alexander G;
Shank, Stephen D;
Ceres, Kristina M;
Choi, Annette;
Whittaker, Gary R;
Goodman, Laura B;
Stanhope, Michael J

Publication type:

Article

Correction to: Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea.

Published in:: 2023
Publication type:: Correction Notice

Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead018

By:

Orf, Gregory S;
Perez, Lester J;
Meyer, Todd V;
Luk, Ka-Cheung;
Forberg, Kenn;
Rodgers, Mary A;
Hadji, Abbas;
James, Linda;
Mampunza, Samuel;
Achari, Asmeeta;
Yu, Guixia;
Federman, Scot;
Chiu, Charles Y;
McArthur, Carole A;
Cloherty, Gavin A;
Berg, Michael G

Publication type:

Article

Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in influenza A virus from North American swine.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead015

By:

Hufnagel, David E;
Young, Katharine M;
Arendsee, Zebulun W;
Gay, L Claire;
Caceres, C Joaquin;
Rajão, Daniela S;
Perez, Daniel R;
Vincent Baker, Amy L;
Anderson, Tavis K

Publication type:

Article

H9N2 avian influenza virus dispersal along Bangladeshi poultry trading networks.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead014

By:

Carnegie, L;
Hasan, M;
Mahmud, R;
Hoque, M A;
Debnath, N;
Uddin, M H;
Lewis, N S;
Brown, I;
Essen, S;
Giasuddin, Md;
Pfeiffer, D U;
Samad, M A;
Biswas, P;
Raghwani, J;
Fournié, G;
Hill, S C

Publication type:

Article

A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead012

By:

Ashall, James;
Shah, Sonal;
Biggs, Joseph R;
Chang, Jui-Ning R;
Jafari, Yalda;
Brady, Oliver J;
Mai, Huynh Kim;
Lien, Le Thuy;
Do Thai, Hung;
Nguyen, Hien Anh Thi;
Anh, Dang Duc;
Iwasaki, Chihiro;
Kitamura, Noriko;
Van Loock, Marnix;
Herrera-Taracena, Guillermo;
Rasschaert, Freya;
Van Wesenbeeck, Liesbeth;
Yoshida, Lay-Myint;
Hafalla, Julius Clemence R;
Hue, Stephane

Publication type:

Article

Limited cross-species virus transmission in a spatially restricted coral reef fish community.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead011

By:

Costa, Vincenzo A;
Bellwood, David R;
Mifsud, Jonathon C O;
Van Brussel, Kate;
Geoghegan, Jemma L;
Holmes, Edward C;
Harvey, Erin

Publication type:

Article

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead010

By:

Layan, Maylis;
Müller, Nicola F;
Dellicour, Simon;
De Maio, Nicola;
Bourhy, Hervé;
Cauchemez, Simon;
Baele, Guy

Publication type:

Article

HexSE: Simulating evolution in overlapping reading frames.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead009

By:

Muñoz-Baena, Laura;
Wade, Kaitlyn E;
Poon, Art F Y

Publication type:

Article

Phylodynamics of deer tick virus in North America.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead008

By:

McMinn, Rebekah J;
Langsjoen, Rose M;
Bombin, Andrei;
Robich, Rebecca M;
Ojeda, Erick;
Normandin, Erica;
Goethert, Heidi K;
Lubelczyk, Charles B;
Schneider, Elizabeth;
Cosenza, Danielle;
Meagher, Molly;
Prusinski, Melissa A;
Sabeti, Pardis C;
Smith, Robert P;
Telford III, Sam R;
Piantadosi, Anne;
Ebel, Gregory D

Publication type:

Article

Quantifying the value of viral genomics when inferring who infected whom in the 2014–16 Ebola virus outbreak in Guinea.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead007

By:

Robert, Alexis;
Tsui Lok Hei, Joseph;
Watson, Conall H;
Gsell, Pierre-Stéphane;
Hall, Yper;
Rambaut, Andrew;
Longini Jr., Ira M;
Sakoba, Keïta;
Kucharski, Adam J;
Touré, Alhassane;
Danmadji Nadlaou, Sévérine;
Saidou Barry, Mamadou;
Fofana, Thierno Oumar;
Lansana Kaba, Ibrahima;
Sylla, Lansana;
Diaby, Mohamed Lamine;
Soumah, Ousmane;
Diallo, Abdourahime;
Niare, Amadou;
Diallo, Abdourahamane

Publication type:

Article

Evolutionary dynamics of respiratory syncytial virus in Buenos Aires: Viral diversity, migration, and subgroup replacement.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead006

By:

Goya, Stephanie;
Lucion, Maria Florencia;
Shilts, Meghan H;
Juárez, María del Valle;
Gentile, Angela;
Mistchenko, Alicia S;
Viegas, Mariana;
Das, Suman R

Publication type:

Article

Emergence and pandemic spread of small ruminant lentiviruses.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead005

By:

Carrozza, Maria-Luisa;
Niewiadomska, Anna-Maria;
Mazzei, Maurizio;
Abi-Said, Mounir R;
Hué, Stéphane;
Hughes, Joseph;
Gatseva, Anna;
Gifford, Robert J

Publication type:

Article

Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead004

By:

Braun, Katarina M;
Haddock III, Luis A;
Crooks, Chelsea M;
Barry, Gabrielle L;
Lalli, Joseph;
Neumann, Gabriele;
Watanabe, Tokiko;
Imai, Masaki;
Yamayoshi, Seiya;
Ito, Mutsumi;
Moncla, Louise H;
Koelle, Katia;
Kawaoka, Yoshihiro;
Friedrich, Thomas C

Publication type:

Article

Virus-induced interference as a means for accelerating fitness-based selection of cyprinid herpesvirus 3 single-nucleotide variants in vitro and in vivo.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead003

By:

Gao, Yuan;
Sridhar, Arun;
Bernard, Noah;
He, Bo;
Zhang, Haiyan;
Pirotte, Sébastien;
Desmecht, Salomé;
Vancsok, Catherine;
Boutier, Maxime;
Suárez, Nicolás M;
Davison, Andrew J;
Donohoe, Owen;
Vanderplasschen, Alain F C

Publication type:

Article

Evolutionary rate of SARS-CoV-2 increases during zoonotic infection of farmed mink.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead002

By:

Porter, Ashleigh F;
Purcell, Damian F J;
Howden, Benjamin P;
Duchene, Sebastian

Publication type:

Article

Anellovirus evolution during long-term chronic infection.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead001

By:

Kaczorowska, Joanna;
Timmerman, Anne L;
Deijs, Martin;
Kinsella, Cormac M;
Bakker, Margreet;
van der Hoek, Lia

Publication type:

Article

Discovery of novel Mamastroviruses in Bactrian camels and dromedaries reveals complex recombination history.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac125

By:

Qureshi, Muhammad I;
Worthington, Brian M;
Liu, Yongmei;
Cheung, William Y.-M;
Su, Shuo;
Zheng, Zuoyi;
Li, Lifeng;
Lam, Tommy T -Y;
Guan, Yi;
Zhu, Huachen

Publication type:

Article

Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac124

By:

Mifsud, Jonathon C O;
Costa, Vincenzo A;
Petrone, Mary E;
Marzinelli, Ezequiel M;
Holmes, Edward C;
Harvey, Erin

Publication type:

Article

Reekeekee- and roodoodooviruses, two different Microviridae clades constituted by the smallest DNA phages.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac123

By:

Olo Ndela, Eric;
Roux, Simon;
Henke, Christian;
Sczyrba, Alexander;
Sime Ngando, Télesphore;
Varsani, Arvind;
Enault, François

Publication type:

Article

Habitat connectivity and host relatedness influence virus spread across an urbanising landscape in a fragmentation-sensitive carnivore.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac122

By:

Kozakiewicz, Christopher P;
Burridge, Christopher P;
Lee, Justin S;
Kraberger, Simona J;
Fountain-Jones, Nicholas M;
Fisher, Robert N;
Lyren, Lisa M;
Jennings, Megan K;
Riley, Seth P D;
Serieys, Laurel E K;
Craft, Meggan E;
Funk, W Chris;
Crooks, Kevin R;
VandeWoude, Sue;
Carver, Scott

Publication type:

Article

bayroot: Bayesian sampling of HIV-1 integration dates by root-to-tip regression.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac120

By:

Ferreira, Roux-Cil;
Wong, Emmanuel;
Poon, Art F Y

Publication type:

Article

Reversions to consensus are positively selected in HIV-1 and bias substitution rate estimates.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac118

By:

Druelle, Valentin;
Neher, Richard A

Publication type:

Article

Long-term host–pathogen evolution of endogenous beta- and gammaretroviruses in mouse lemurs with little evidence of recent retroviral introgression.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac117

By:

Kessler, Sharon E;
Tsangaras, Kyriakos;
Rasoloharijaona, Solofonirina;
Radespiel, Ute;
Greenwood, Alex D

Publication type:

Article

Genomic epidemiology of SARS-CoV-2 in Cambodia, January 2020 to February 2021.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac121

By:

Su, Yvonne C F;
Ma, Jordan Z J;
Ou, Tey Putita;
Pum, Leakhena;
Krang, Sidonn;
Raftery, Philomena;
Kinzer, Michael H;
Bohl, Jennifer;
Ieng, Vanra;
Kab, Vannda;
Patel, Sarika;
Sar, Borann;
Ying, Wong Foong;
Jayakumar, Jayanthi;
Horm, Viseth Srey;
Boukli, Narjis;
Yann, Sokhoun;
Troupin, Cecile;
Heang, Vireak;
Garcia-Rivera, Jose A

Publication type:

Article

Polymorphisms predicting phylogeny in hepatitis B virus.

Published in:

Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/veac116

By:

Lourenço, José;
McNaughton, Anna L;
Pley, Caitlin;
Obolski, Uri;
Gupta, Sunetra;
Matthews, Philippa C

Publication type:

Article