Works matching IS 20571577 AND DT 2022 AND VI 8 AND IP 2

Results: 60

Correction to: The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.

Published in:: Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac119
Publication type:: Article

A biophysical model of viral escape from polyclonal antibodies.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac110

By:

Yu, Timothy C;
Thornton, Zorian T;
Hannon, William W;
DeWitt, William S;
Radford, Caelan E;
Matsen, Frederick A;
Bloom, Jesse D

Publication type:

Article

Discovering recent selection forces shaping the evolution of dengue viruses based on polymorphism data across geographic scales.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac108

By:

Li, Nien-Kung;
Corander, Jukka;
Grad, Yonatan H;
Chang, Hsiao-Han

Publication type:

Article

Contributions of adaptation and purifying selection to SARS-CoV-2 evolution.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac113

By:

Neher, Richard A

Publication type:

Article

Everglades virus evolution: Genome sequence analysis of the envelope 1 protein reveals recent mutation and divergence in South Florida wetlands.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac111

By:

Valente, Monica C;
Prakoso, Dhani;
Vittor, Amy Y;
Blosser, Erik M;
Abid, Nabil;
Pu, Ruiyu;
Beachboard, Sarah E;
Long, Maureen T;
Burkett-Cadena, Nathan D;
Mavian, Carla N

Publication type:

Article

Endogenous giant viruses contribute to intraspecies genomic variability in the model green alga Chlamydomonas reinhardtii.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac102

By:

Moniruzzaman, Mohammad;
Erazo-Garcia, Maria P;
Aylward, Frank O

Publication type:

Article

The evolution of the HIV-1 protease folding stability.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac115

By:

Ferreiro, David;
Khalil, Ruqaiya;
Gallego, María J;
Osorio, Nuno S;
Arenas, Miguel

Publication type:

Article

Correction to: Human cytomegalovirus strain diversity and dynamics reveal the donor lung as a major contributor after transplantation.

Published in:: Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac107
Publication type:: Article

SARS-CoV-2 intra-host single-nucleotide variants associated with disease severity.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac106

By:

Zhang, Yi;
Jiang, Ning;
Qi, Weiqiang;
Li, Tao;
Zhang, Yumeng;
Wu, Jing;
Zhang, Haocheng;
Zhou, Mingzhe;
Cui, Peng;
Yu, Tong;
Fu, Zhangfan;
Zhou, Yang;
Lin, Ke;
Wang, Hongyu;
Wei, Tongqing;
Zhu, Zhaoqin;
Ai, Jingwen;
Qiu, Chao;
Zhang, Wenhong

Publication type:

Article

Gene amplification acts as a molecular foothold to facilitate cross-species adaptation and evasion of multiple antiviral pathways.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac105

By:

Banerjee, Shefali;
Smith, Cathy;
Geballe, Adam P;
Rothenburg, Stefan;
Kitzman, Jacob O;
Brennan, Greg

Publication type:

Article

Genome Evolution and Early Introductions of the SARS-CoV-2 Omicron Variant in Mexico.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac109

By:

Castelán-Sánchez, Hugo G;
Martínez-Castilla, León P;
Sganzerla-Martínez, Gustavo;
Torres-Flores, Jesús;
López-Leal, Gamaliel

Publication type:

Article

Multiple waves of viral invasions in Symbiodiniaceae algal genomes.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac101

By:

Benites, L Felipe;
Stephens, Timothy G;
Bhattacharya, Debashish

Publication type:

Article

Metagenomics show high spatiotemporal virus diversity and ecological compartmentalisation: Virus infections of melon, Cucumis melo, crops, and adjacent wild communities.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac095

By:

McLeish, Michael J;
Zamfir, Adrián D;
Babalola, Bisola M;
Peláez, Adrián;
Fraile, Aurora;
García-Arenal, Fernando

Publication type:

Article

Fast-forwarding evolution—Accelerated adaptation in a proofreading-deficient hypermutator herpesvirus.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac099

By:

Xing, Na;
Höfler, Thomas;
Hearn, Cari J;
Nascimento, Mariana;
Paradell, Georgina Camps;
McMahon, Dino P;
Kunec, Dusan;
Osterrieder, Nikolaus;
Cheng, Hans H;
Trimpert, Jakob

Publication type:

Article

Haplotype assignment of longitudinal viral deep sequencing data using covariation of variant frequencies.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac093

By:

Venturini, Cristina;
Pang, Juanita;
Tamuri, Asif U;
Roy, Sunando;
Atkinson, Claire;
Griffiths, Paul;
Breuer, Judith;
Goldstein, Richard A

Publication type:

Article

Rapid evolution of SARS-CoV-2 in domestic cats.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac092

By:

Bashor, Laura;
Gagne, Roderick B;
Bosco-Lauth, Angela;
Stenglein, Mark;
VandeWoude, Sue

Publication type:

Article

Identification of a novel polyomavirus from a marsupial host.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac096

By:

Dunowska, Magdalena;
Perrott, Matthew;
Biggs, Patrick

Publication type:

Article

Formal recognition and classification of gene transfer agents as viriforms.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac100

By:

Kogay, Roman;
Koppenhöfer, Sonja;
Beatty, J Thomas;
Kuhn, Jens H;
Lang, Andrew S;
Zhaxybayeva, Olga

Publication type:

Article

Modeling cellular co-infection and reassortment of bluetongue virus in Culicoides midges.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac094

By:

Cavany, Sean M;
Barbera, Carly;
Carpenter, Molly;
Rodgers, Case;
Sherman, Tyler;
Stenglein, Mark;
Mayo, Christie;
Perkins, T Alex

Publication type:

Article

Molecular phylogeny of human adenovirus type 41 lineages.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac098

By:

Götting, Jasper;
Cordes, Anne K;
Steinbrück, Lars;
Heim, Albert

Publication type:

Article

Viral origin of eukaryotic type IIA DNA topoisomerases.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac097

By:

Guglielmini, Julien;
Gaia, Morgan;
Cunha, Violette Da;
Criscuolo, Alexis;
Krupovic, Mart;
Forterre, Patrick

Publication type:

Article

Accumulation of copy-back viral genomes during respiratory syncytial virus infection is preceded by diversification of the copy-back viral genome population followed by selection.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac091

By:

Felt, Sébastien A;
Achouri, Emna;
Faber, Sydney R;
López, Carolina B

Publication type:

Article

Meta-transcriptomics reveals potential virus transfer between Aedes communis mosquitoes and their parasitic water mites.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac090

By:

Ortiz-Baez, Ayda Susana;
Holmes, Edward C;
Charon, Justine;
Pettersson, John H-O;
Hesson, Jenny C

Publication type:

Article

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac089

By:

Dorp, Christiaan van;
Goldberg, Emma;
Ke, Ruian;
Hengartner, Nick;
Romero-Severson, Ethan

Publication type:

Article

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions.

Published in:

2022

By:

Nahata, Kanika D;
Bielejec, Filip;
Monetta, Juan;
Dellicour, Simon;
Rambaut, Andrew;
Suchard, Marc A;
Baele, Guy;
Lemey, Philippe

Publication type:

Product Review

Host prediction for disease-associated gastrointestinal cressdnaviruses.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac087

By:

Kinsella, Cormac M;
Deijs, Martin;
Becker, Christin;
Broekhuizen, Patricia;
Gool, Tom van;
Bart, Aldert;
Schaefer, Arne S;
van der Hoek, Lia

Publication type:

Article

Phenotypic flux: The role of physiology in explaining the conundrum of bacterial persistence amid phage attack.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac086

By:

Igler, Claudia

Publication type:

Article

Comparative analysis of genome-encoded viral sequences reveals the evolutionary history of flavivirids (family Flaviviridae).

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac085

By:

Bamford, Connor G G;
Souza, William M de;
Parry, Rhys;
Gifford, Robert J

Publication type:

Article

Monotreme-specific conserved putative proteins derived from retroviral reverse transcriptase.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac084

By:

Kitao, Koichi;
Miyazawa, Takayuki;
Nakagawa, So

Publication type:

Article

Importation and circulation of rubella virus lineages 1E-L2 and 2B-L2c between 2018 and 2021 in China: Virus evolution and spatial–temporal transmission characteristics.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac083

By:

Liu, Ying;
Han, Zhenzhi;
Kang, Chuyun;
Cui, Aili;
Zhang, Yan;
Liu, Li;
Chen, Ying;
Deng, Lili;
Zhao, Hua;
Zhou, Jun;
Li, Fangcai;
Zhou, Shujie;
Feng, Daxing;
Tian, Xiaoling;
Feng, Yan;
Cui, Xiaoxian;
Lei, Yue;
Wang, Yan;
Yuan, Fang;
Fan, Lixia

Publication type:

Article

RdRp-scan: A bioinformatic resource to identify and annotate divergent RNA viruses in metagenomic sequence data.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac082

By:

Charon, Justine;
Buchmann, Jan P;
Sadiq, Sabrina;
Holmes, Edward C

Publication type:

Article

Evolutionary and temporal dynamics of emerging influenza D virus in Europe (2009–22).

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac081

By:

Gaudino, Maria;
Chiapponi, Chiara;
Moreno, Ana;
Zohari, Siamak;
O'Donovan, Tom;
Quinless, Emma;
Sausy, Aurélie;
Oliva, Justine;
Salem, Elias;
Fusade-Boyer, Maxime;
Meyer, Gilles;
Hübschen, Judith M;
Saegerman, Claude;
Ducatez, Mariette F;
Snoeck, Chantal J

Publication type:

Article

The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac080

By:

Hill, Verity;
Plessis, Louis Du;
Peacock, Thomas P;
Aggarwal, Dinesh;
Colquhoun, Rachel;
Carabelli, Alesandro M;
Ellaby, Nicholas;
Gallagher, Eileen;
Groves, Natalie;
Jackson, Ben;
McCrone, J T;
O'Toole, Áine;
Price, Anna;
Sanderson, Theo;
Scher, Emily;
Southgate, Joel;
Volz, Erik;
Barclay, Wendy S;
Barrett, Jeffrey C;
Chand, Meera

Publication type:

Article

Variation in within-host replication kinetics among virus genotypes provides evidence of specialist and generalist infection strategies across three salmonid host species.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac079

By:

Páez, David J;
McKenney, Douglas;
Purcell, Maureen K;
Naish, Kerry A;
Kurath, Gael

Publication type:

Article

Lineage BA.2 dominated the Omicron SARS-CoV-2 epidemic wave in the Philippines.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac078

By:

Li, Yao-Tsun;
Polotan, Francisco Gerardo M;
Sotelo, Gerald Ivan S;
Alpino, Anne Pauline A;
Dolor, Ardiane Ysabelle M;
Tujan, Ma. Angelica A;
Gomez, Ma. Ricci R;
Onza, Othoniel Jan T;
Chang, Angela Kae T;
Bautista, Criselda T;
Carandang, June C;
Yangzon, Maria Sofia L;
Pangilinan, Elcid Aaron R;
Mantaring, Renato Jacinto;
Telles, Alyssa Joyce E;
Egana, John Michael C;
Endozo, Joshua Jose S;
Cruz, Rianna Patricia S;
Tablizo, Francis A;
Yap, Jan Michael C

Publication type:

Article

A threat from both sides: Multiple introductions of genetically distinct H5 HPAI viruses into Canada via both East Asia-Australasia/Pacific and Atlantic flyways.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac077

By:

Alkie, Tamiru N;
Lopes, Sara;
Hisanaga, Tamiko;
Xu, Wanhong;
Suderman, Matthew;
Koziuk, Janice;
Fisher, Mathew;
Redford, Tony;
Lung, Oliver;
Joseph, Tomy;
Himsworth, Chelsea G;
Brown, Ian H;
Bowes, Victoria;
Lewis, Nicola S;
Berhane, Yohannes

Publication type:

Article

Human cytomegalovirus strain diversity and dynamics reveal the donor lung as a major contributor after transplantation.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac076

By:

Külekci, Büsra;
Schwarz, Stefan;
Brait, Nadja;
Perkmann-Nagele, Nicole;
Jaksch, Peter;
Hoetzenecker, Konrad;
Puchhammer-Stöckl, Elisabeth;
Goerzer, Irene

Publication type:

Article

Intrahost evolution of the HIV-2 capsid correlates with progression to AIDS.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac075

By:

Boswell, M T;
Nazziwa, J;
Kuroki, K;
Palm, A;
Karlson, S;
Månsson, F;
Biague, A;
Silva, Z J da;
Onyango, C O;
Silva, T I de;
Jaye, A;
Norrgren, H;
Medstrand, P;
Jansson, M;
Maenaka, K;
Rowland-Jones, S L;
Esbjörnsson, J

Publication type:

Article

Evolutionary features of a prolific subtype of avian influenza A virus in European waterfowl.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac074

By:

Wille, Michelle;
Tolf, Conny;
Latorre-Margalef, Neus;
Fouchier, Ron A M;
Halpin, Rebecca A;
Wentworth, David E;
Ragwani, Jayna;
Pybus, Oliver G;
Olsen, Björn;
Waldenström, Jonas

Publication type:

Article

Disentangling the role of poultry farms and wild birds in the spread of highly pathogenic avian influenza virus in Europe.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac073

By:

Guinat, Claire;
Agüí, Cecilia Valenzuela;
Vaughan, Timothy G;
Scire, Jérémie;
Pohlmann, Anne;
Staubach, Christoph;
King, Jacqueline;
Świętoń, Edyta;
Dán, Ádám;
Černíková, Lenka;
Ducatez, Mariette F;
Stadler, Tanja

Publication type:

Article

Silent codon positions in the A-rich HIV RNA genome that do not easily become A: Restrictions imposed by the RNA sequence and structure.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac072

By:

Berkhout, Ben;
Hemert, Formijn J van

Publication type:

Article

covSampler: A subsampling method with balanced genetic diversity for large-scale SARS-CoV-2 genome data sets.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac071

By:

Cheng, Yexiao;
Ji, Chengyang;
Han, Na;
Li, Jiaying;
Xu, Lin;
Chen, Ziyi;
Yang, Rong;
Zhou, Hang-Yu;
Wu, Aiping

Publication type:

Article

New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac070

By:

Zucker, Falk;
Bischoff, Vera;
Ndela, Eric Olo;
Heyerhoff, Benedikt;
Poehlein, Anja;
Freese, Heike M;
Roux, Simon;
Simon, Meinhard;
Enault, Francois;
Moraru, Cristina

Publication type:

Article

A single early introduction governed viral diversity in the second wave of SARS-CoV-2 epidemic in Hungary.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac069

By:

Ari, Eszter;
Vásárhelyi, Bálint Márk;
Kemenesi, Gábor;
Tóth, Gábor Endre;
Zana, Brigitta;
Somogyi, Balázs;
Lanszki, Zsófia;
Röst, Gergely;
Jakab, Ferenc;
Papp, Balázs;
Kintses, Bálint

Publication type:

Article

Integrated viral elements suggest the dual lifestyle of Tetraselmis spp. Polinton-like viruses.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac068

By:

Chase, Emily E;
Desnues, Christelle;
Blanc, Guillaume

Publication type:

Article

High genetic stability of co-circulating human adenovirus type 31 lineages over 59 years.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac067

By:

Götting, Jasper;
Baier, Claas;
Panagiota, Victoria;
Maecker-Kolhoff, Britta;
Dhingra, Akshay;
Heim, Albert

Publication type:

Article

Association of hepatitis C virus genotype 2 spread with historic slave trade and commerce routes in Western Africa.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac066

By:

Postigo-Hidalgo, Ignacio;
Magassouba, N'Faly;
Soropogui, Barré;
Fichet-Calvet, Elisabeth;
Drexler, Jan Felix

Publication type:

Article

Co-infection of mammarenaviruses in a wild mouse, Tanzania.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac065

By:

Cuypers, Laura N;
Čížková, Dagmar;
Bellocq, Joëlle Goüy de

Publication type:

Article

Defects in plant immunity modulate the rates and patterns of RNA virus evolution.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac059

By:

Navarro, Rebeca;
Ambrós, Silvia;
Butković, Anamarija;
Carrasco, José L;
González, Rubén;
Martínez, Fernando;
Wu, Beilei;
Elena, Santiago F

Publication type:

Article

Evolution of ACE2-independent SARS-CoV-2 infection and mouse adaption after passage in cells expressing human and mouse ACE2.

Published in:

Virus Evolution, 2022, v. 8, n. 2, p. 1, doi. 10.1093/ve/veac063

By:

Yan, Kexin;
Dumenil, Troy;
Tang, Bing;
Le, Thuy T;
Bishop, Cameron R;
Suhrbier, Andreas;
Rawle, Daniel J

Publication type:

Article