Works matching IS 20571577 AND DT 2021 AND VI 7 AND IP 1

Results: 69

A comprehensive analysis of genetic diversity of EBV reveals potential high-risk subtypes associated with nasopharyngeal carcinoma in China.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab010

By:

Wen-Qiong Xue;
Tong-Min Wang;
Jing-Wen Huang;
Jiang-Bo Zhang;
Yong-Qiao He;
Zi-Yi Wu;
Ying Liao;
Lei-Lei Yuan;
Jianbing Mu;
Wei-Hua Jia

Publication type:

Article

Polymorphism of genetic ambigrams.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab038

By:

Dudas, Gytis;
Huber, Greg;
Wilkinson, Michael;
Yllanes, David

Publication type:

Article

LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab042

By:

Qaffas, Ahmed Al;
Nichols, Jenna;
Davison, Andrew J;
Ourahmane, Amine;
Hertel, Laura;
McVoy, Michael A;
Camiolo, Salvatore

Publication type:

Article

Differential disease severity and whole-genome sequence analysis for human influenza A/H1N1pdm virus in 2015–2016 influenza season.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab044

By:

Liu, Hsuan;
Gong, Yu-Nong;
Shaw-Saliba, Kathryn;
Mehoke, Thomas;
Evans, Jared;
Liu, Zhen-Ying;
Lewis, Mitra;
Sauer, Lauren;
Thielen, Peter;
Rothman, Richard;
Chen, Kuan-Fu;
Pekosz, Andrew

Publication type:

Article

Adintoviruses: a proposed animal-tropic family of midsize eukaryotic linear dsDNA (MELD) viruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veaa055

By:

Starrett, Gabriel J.;
Tisza, Michael J.;
Welch, Nicole L.;
Belford, Anna K.;
Peretti, Alberto;
Pastrana, Diana V.;
Buck, Christopher B.

Publication type:

Article

Genomic evolution, transmission dynamics, and pathogenicity of avian influenza A (H5N8) viruses emerging in China, 2020.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab046

By:

Zhang, Jiahao;
Li, Xudong;
Wang, Xiaomin;
Ye, Hejia;
Li, Bo;
Chen, Yiqun;
Chen, Junhong;
Zhang, Tao;
Qiu, Ziwen;
Li, Huanan;
Jia, Weixin;
Liao, Ming;
Qi, Wenbao

Publication type:

Article

Experimental virus evolution in cancer cell monolayers, spheroids, and tissue explants.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab045

By:

Al-Zaher, Ahmed;
Domingo-Calap, Pilar;
Sanjuán, Rafael

Publication type:

Article

Modeling the selective advantage of new amino acids on the hemagglutinin of H1N1 influenza viruses using their patient age distributions.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab049

By:

Piantham, Chayada;
Ito, Kimihito

Publication type:

Article

The central role of Italy in the spatial spread of USUTU virus in Europe.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab048

By:

Zecchin, B;
Fusaro, A;
Milani, A;
Schivo, A;
Ravagnan, S;
Ormelli, S;
Mavian, C;
Michelutti, A;
Toniolo, F;
Barzon, L;
Monne, I;
Capelli, G

Publication type:

Article

Identification of H3N2 NA and PB1-F2 genetic variants and their association with disease symptoms during the 2014–15 influenza season.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab047

By:

Blumenkrantz, Deena R;
Mehoke, Thomas;
Shaw-Saliba, Kathryn;
Powell, Harrison;
Wohlgemuth, Nicholas;
Liu, Hsuan;
Macias, Elizabeth;
Evans, Jared;
Lewis, Mitra;
Medina, Rebecca;
Hardick, Justin;
Sauer, Lauren M;
Dugas, Andrea;
DuVal, Anna;
Lane, Andrew P;
Gaydos, Charlotte;
Rothman, Richard;
Thielen, Peter;
Pekosz, Andrew

Publication type:

Article

Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab041

By:

San, James E;
Ngcapu, Sinaye;
Kanzi, Aquillah M;
Tegally, Houriiyah;
Fonseca, Vagner;
Giandhari, Jennifer;
Wilkinson, Eduan;
Nelson, Chase W;
Smidt, Werner;
Kiran, Anmol M;
Chimukangara, Benjamin;
Pillay, Sureshnee;
Singh, Lavanya;
Fish, Maryam;
Gazy, Inbal;
Martin, Darren P;
Khanyile, Khulekani;
Lessells, Richard;
Oliveira, Tulio de

Publication type:

Article

Alternation between taxonomically divergent hosts is not the major determinant of flavivirus evolution.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab040

By:

Pontremoli, Chiara;
Forni, Diego;
Clerici, Mario;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

The evolutionary dynamics of viruses: virion release strategies, time delays and fitness minima.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab039

By:

Lord, Jennifer S;
Bonsall, Michael B

Publication type:

Article

Two distant helicases in one mycovirus: evidence of horizontal gene transfer between mycoviruses, coronaviruses and other nidoviruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab043

By:

Abdoulaye, Assane Hamidou;
Hai, Du;
Tang, Qing;
Jiang, Daohong;
Fu, Yanping;
Cheng, Jiasen;
Lin, Yang;
Li, Bo;
Kotta-Loizou, Ioly;
Xie, Jiatao

Publication type:

Article

Genetic diversity of avian leukosis virus subgroup J (ALV-J): toward a unified phylogenetic classification and nomenclature system.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab037

By:

Deng, Qiaomu;
Li, Min;
He, Chengwei;
Lu, Qiaoe;
Gao, Yanli;
Li, Qiuhong;
Shi, Mengya;
Wang, Peikun;
Wei, Ping

Publication type:

Article

Molecular detection and genomic characterization of diverse hepaciviruses in African rodents.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab036

By:

Bletsa, Magda;
Vrancken, Bram;
Gryseels, Sophie;
Boonen, Ine;
Fikatas, Antonios;
Li, Yiqiao;
Laudisoit, Anne;
Lequime, Sebastian;
Bryja, Josef;
Makundi, Rhodes;
Meheretu, Yonas;
Akaibe, Benjamin Dudu;
Mbalitini, Sylvestre Gambalemoke;
Perre, Frederik Van de;
Houtte, Natalie Van;
Těšíková, Jana;
Wollants, Elke;
Ranst, Marc Van;
Pybus, Oliver G;
Drexler, Jan Felix

Publication type:

Article

Erratum: Virome composition in marine fish revealed by meta-transcriptomics.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab035

By:

Geoghegan, Jemma L;
Giallonardo, Francesca Di;
Wille, Michelle;
Ortiz-Baez, Ayda Susana;
Costa, Vincenzo A;
Ghaly, Timothy;
Mifsud, Jonathon C O;
Turnbull, Olivia M H;
Bellwood, David R;
Williamson, Jane E;
Holmes, Edward C

Publication type:

Article

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab034

By:

Costa, Vincenzo A;
Mifsud, Jonathon C O;
Gilligan, Dean;
Williamson, Jane E;
Holmes, Edward C;
Geoghegan, Jemma L

Publication type:

Article

Redondoviridae and periodontitis: a case–control study and identification of five novel redondoviruses from periodontal tissues.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab033

By:

Zhang, Yu;
Wang, Chunmei;
Feng, Xiping;
Chen, Xi;
Zhang, Wen

Publication type:

Article

Interannual dynamics, diversity and evolution of the virome in Sclerotinia sclerotiorum from a single crop field.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab032

By:

Jia, Jichun;
Fu, Yanping;
Jiang, Daohong;
Mu, Fan;
Cheng, Jiasen;
Lin, Yang;
Li, Bo;
Marzano, Shin-Yi Lee;
Xie, Jiatao

Publication type:

Article

The discovery, distribution, and diversity of DNA viruses associated with Drosophila melanogaster in Europe.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab031

By:

Wallace, Megan A;
Coffman, Kelsey A;
Gilbert, Clément;
Ravindran, Sanjana;
Albery, Gregory F;
Abbott, Jessica;
Argyridou, Eliza;
Bellosta, Paola;
Betancourt, Andrea J;
Colinet, Hervé;
Eric, Katarina;
Glaser-Schmitt, Amanda;
Grath, Sonja;
Jelic, Mihailo;
Kankare, Maaria;
Kozeretska, Iryna;
Loeschcke, Volker;
Montchamp-Moreau, Catherine;
Ometto, Lino;
Onder, Banu Sebnem

Publication type:

Article

Intrahost speciations and host switches played an important role in the evolution of herpesviruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab025

By:

Brito, Anderson F;
Baele, Guy;
Nahata, Kanika D;
Grubaugh, Nathan D;
Pinney, John W

Publication type:

Article

Corrigendum to: Emergence and evolution of highly pathogenic porcine epidemic diarrhea virus by natural recombination of a low pathogenic vaccine isolate and a highly pathogenic strain in the spike gene.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab029

By:

Wang, Huinuan;
Zhang, Libo;
Shang, Yuanbing;
Tan, Rongrong;
Ji, Mingxiang;
Yue, Xinliang;
Wang, Nannan;
Liu, Jun;
Wang, Chunhua;
Li, Yonggang;
Zhou, Tiezhong

Publication type:

Article

Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab028

By:

Douglas, Jordan;
Drummond, Alexei J;
Kingston, Richard L

Publication type:

Article

Erratum: Discovery of divided RdRp sequences and a hitherto unknown genomic complexity in fungal viruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab027

By:

Chiba, Yuto;
Oiki, Sayoko;
Yaguchi, Takashi;
Urayama, Syun-ichi;
Hagiwara, Daisuke

Publication type:

Article

Quantifying the dynamics of viral recombination during free virus and cell-to-cell transmission in HIV-1 infection.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab026

By:

Kreger, Jesse;
Garcia, Josephine;
Zhang, Hongtao;
Komarova, Natalia L;
Wodarz, Dominik;
Levy, David N

Publication type:

Article

Viromics of extant insect orders unveil the evolution of the flavi-like superfamily.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab030

By:

Paraskevopoulou, Sofia;
Käfer, Simon;
Zirkel, Florian;
Donath, Alexander;
Petersen, Malte;
Liu, Shanlin;
Zhou, Xin;
Drosten, Christian;
Misof, Bernhard;
Junglen, Sandra

Publication type:

Article

HIV-2 diversity displays two clades within group A with distinct geographical distribution and evolution.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab024

By:

Visseaux, Benoit;
Bertine, Mélanie;
Hingrat, Quentin Le;
Ferré, Valentine;
Charpentier, Charlotte;
Collin, Fidéline;
Damond, Florence;
Matheron, Sophie;
Hué, Stéphane;
Descamps, Diane

Publication type:

Article

Comparative genomic analysis of genogroup 1 and genogroup 2 rotaviruses circulating in seven US cities, 2014–2016.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab023

By:

Esona, Mathew D;
Gautam, Rashi;
Katz, Eric;
Jaime, Jose;
Ward, M Leanne;
Wikswo, Mary E;
Betrapally, Naga S;
Rustempasic, Slavica M;
Selvarangan, Rangaraj;
Harrison, Christopher J;
Boom, Julie A;
Englund, Jan;
Klein, Eileen J;
Staat, Mary Allen;
McNeal, Monica M;
Halasa, Natasha;
Chappell, James;
Weinberg, Geoffrey A;
Payne, Daniel C;
Parashar, Umesh D

Publication type:

Article

Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab022

By:

Yan, Qiulong;
Wang, Yu;
Chen, Xiuli;
Jin, Hao;
Wang, Guangyang;
Guan, Kuiqing;
Zhang, Yue;
Zhang, Pan;
Ayaz, Taj;
Liang, Yanshan;
Wang, Junyi;
Cui, Guangyi;
Sun, Yuanyuan;
Xiao, Manchun;
Kang, Jian;
Zhang, Wei;
Zhang, Aiqin;
Li, Peng;
Liu, Xueyang;
Ulllah, Hayan

Publication type:

Article

Structural phylogenetic analysis reveals lineage-specific RNA repetitive structural motifs in all coronaviruses and associated variations in SARS-CoV-2.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab021

By:

Chen, Shih-Cheng;
Olsthoorn, René C L;
Yu, Chien-Hung

Publication type:

Article

The evolutionary dynamics of endemic human coronaviruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab020

By:

Jo, Wendy K;
Drosten, Christian;
Drexler, Jan Felix

Publication type:

Article

Ancient gene duplications in RNA viruses revealed by protein tertiary structure comparisons.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab019

By:

Cisneros-Martínez, Alejandro Miguel;
Becerra, Arturo;
Lazcano, Antonio

Publication type:

Article

Emergence and characterization of a putative novel human adenovirus recombinant HAdV-C104 causing pneumonia in Southern China.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab018

By:

Ji, Tianxing;
Li, Ling;
Li, Wenrui;
Zheng, Xuehua;
Ye, Xianmiao;
Chen, Hongliang;
Zhou, Qiang;
Jia, Hongyun;
Chen, Bo;
Lin, Zhen;
Chen, Haoyu;
Huang, Shiwen;
Seto, Donald;
Chen, Ling;
Feng, Liqiang

Publication type:

Article

Ancient evolution of hepadnaviral paleoviruses and their impact on host genomes.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab012

By:

Lytras, Spyros;
Arriagada, Gloria;
Gifford, Robert J

Publication type:

Article

Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab016

By:

Peña, Marcos de la;
Ceprián, Raquel;
Casey, John L;
Cervera, Amelia

Publication type:

Article

Evolution of DNA packaging in gene transfer agents.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab015

By:

Esterman, Emma S;
Wolf, Yuri I;
Kogay, Roman;
Koonin, Eugene V;
Zhaxybayeva, Olga

Publication type:

Article

Unification and extensive diversification of M/Orf3-related ion channel proteins in coronaviruses and other nidoviruses.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab014

By:

Tan, Yongjun;
Schneider, Theresa;
Shukla, Prakash K;
Chandrasekharan, Mahesh B;
Aravind, L;
Zhang, Dapeng

Publication type:

Article

SARS-CoV-2 genomic analyses in cancer patients reveal elevated intrahost genetic diversity.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab013

By:

Siqueira, Juliana D;
Goes, Livia R;
Alves, Brunna M;
Carvalho, Pedro S de;
Cicala, Claudia;
Arthos, James;
Viola, João P B;
Melo, Andréia C de;
Soares, Marcelo A

Publication type:

Article

Increasing temperature alters the within-host competition of viral strains and influences virus genetic variability.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab017

By:

Alcaide, Cristina;
Sardanyés, Josep;
Elena, Santiago F;
Gómez, Pedro

Publication type:

Article

Test-and-treat coverage and HIV virulence evolution among men who have sex with men.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab011

By:

Stansfield, Sarah E;
Herbeck, Joshua T;
Gottlieb, Geoffrey S;
Abernethy, Neil F;
Murphy, James T;
Mittler, John E;
Goodreau, Steven M

Publication type:

Article

The history of foot-and-mouth disease virus serotype C: the first known extinct serotype?

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab009

By:

Paton, David J;
Nardo, Antonello Di;
Knowles, Nick J;
Wadsworth, Jemma;
Pituco, Edviges M;
Cosivi, Ottorino;
Rivera, Alejandro M;
Kassimi, Labib Bakkali;
Brocchi, Emiliana;
Clercq, Kris de;
Carrillo, Consuelo;
Maree, Francois F;
Singh, Raj K;
Vosloo, Wilna;
Park, Min-Kyung;
Sumption, Keith J;
Ludi, Anna B;
King, Donald P

Publication type:

Article

Genomes reveal genetic diversity of Piscine orthoreovirus in farmed and free-ranging salmonids from Canada and USA.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab008

By:

Siah, A;
Breyta, R B;
Warheit, K I;
Gagne, N;
Purcell, M K;
Morrison, D;
Powell, J F F;
Johnson, S C

Publication type:

Article

The evolutionary history of ACE2 usage within the coronavirus subgenus Sarbecovirus.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab007

By:

Wells, H L;
Letko, M;
Lasso, G;
Ssebide, B;
Nziza, J;
Byarugaba, D K;
Navarrete-Macias, I;
Liang, E;
Cranfield, M;
Han, B A;
Tingley, M W;
Diuk-Wasser, M;
Goldstein, T;
Johnson, C K;
Mazet, J A K;
Chandran, K;
Munster, V J;
Gilardi, K;
Anthony, S J

Publication type:

Article

Alternate primers for whole-genome SARS-CoV-2 sequencing.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab006

By:

Cotten, Matthew;
Bugembe, Dan Lule;
Kaleebu, Pontiano;
Phan, My V.T.

Publication type:

Article

Virome composition in marine fish revealed by meta-transcriptomics.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab005

By:

Geoghegan, Jemma L;
Giallonardo, Francesca Di;
Wille, Michelle;
Ortiz-Baez, Ayda Susana;
Costa, Vincenzo A;
Ghaly, Timothy;
Mifsud, Jonathon C O;
Turnbull, Olivia M H;
Bellwood, David R;
Williamson, Jane E;
Holmes, Edward C

Publication type:

Article

Unresolved advantages of multipartitism in spatially structured environments.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab004

By:

Zwart, Mark P;
Blanc, Stéphane;
Johnson, Marcelle;
Manrubia, Susanna;
Michalakis, Yannis;
Sofonea, Mircea T

Publication type:

Article

Identification of novel avian and mammalian deltaviruses provides new insights into deltavirus evolution.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab003

By:

Iwamoto, Masashi;
Shibata, Yukino;
Kawasaki, Junna;
Kojima, Shohei;
Li, Yung-Tsung;
Iwami, Shingo;
Muramatsu, Masamichi;
Wu, Hui-Lin;
Wada, Kazuhiro;
Tomonaga, Keizo;
Watashi, Koichi;
Horie, Masayuki

Publication type:

Article

Designing transmissible viral vaccines for evolutionary robustness and maximum efficiency.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab002

By:

Layman, Nathan C;
Tuschhoff, Beth M;
Nuismer, Scott L

Publication type:

Article

Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab001

By:

Chiumenti, Michela;
Navarro, Beatriz;
Candresse, Thierry;
Flores, Ricardo;
Serio, Francesco Di

Publication type:

Article