Works matching IS 20571577 AND DT 2020 AND VI 6 AND IP 2

Results: 48

Exploring utility of genomic epidemiology to trace origins of highly pathogenic influenza A/H7N9 in Guangdong.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa097

By:

Bai, Ru;
Sikkema, Reina S;
Munnink, Bas B Oude;
Li, Cong Rong;
Wu, Jie;
Zou, Lirong;
Jing, Yi;
Lu, Jing;
Yuan, Run Yu;
Liao, Ming;
Koopmans, Marion;
Ke, Chang-Wen

Publication type:

Article

Mapping the evolutionary landscape of Zika virus infection in immunocompromised mice.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa092

By:

Johnson, Katherine E E;
Noval, Maria G;
Rangel, Margarita V;
Jesus, Elfie De;
Geber, Adam;
Schuster, Samantha;
Cadwell, Ken;
Ghedin, Elodie;
Stapleford, Kenneth A

Publication type:

Article

Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa091

By:

Plyusnin, Ilya;
Kant, Ravi;
Jääskeläinen, Anne J;
Sironen, Tarja;
Holm, Liisa;
Vapalahti, Olli;
Smura, Teemu

Publication type:

Article

Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa089

By:

Jones, Bradley R;
Joy, Jeffrey B

Publication type:

Article

Longitudinal sampling is required to maximize detection of intrahost A/H3N2 virus variants.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa088

By:

Koel, B F;
Vigeveno, R M;
Pater, M;
Koekkoek, S M;
Han, A X;
Tuan, H M;
Anh, T T N;
Hung, N T;
Thinh, L Q;
Hai, L T;
Ngoc, H T B;
Chau, N V V;
Ngoc, N M;
Chokephaibulkit, K;
Puthavathana, P;
Kinh, N V;
Trinh, T;
Lee, R T C;
Maurer-Stroh, S;
Eggink, D

Publication type:

Article

Bottleneck, Isolate, Amplify, Select (BIAS) as a mechanistic framework for intracellular population dynamics of positive-sense RNA viruses.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa086

By:

Qu, Feng;
Zheng, Limin;
Zhang, Shaoyan;
Sun, Rong;
Slot, Jason;
Miyashita, Shuhei

Publication type:

Article

HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa085

By:

Kist, Nicolaas C;
Lambert, Ben;
Campbell, Samuel;
Katzourakis, Aris;
Lunn, Daniel;
Lemey, Philippe;
Iversen, Astrid K N

Publication type:

Article

Genomic epidemiology of coxsackievirus A16 in mainland of China, 2000–18.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa084

By:

Han, Zhenzhi;
Song, Yang;
Xiao, Jinbo;
Jiang, Lili;
Huang, Wei;
Wei, Haiyan;
Li, Jie;
Zeng, Hanri;
Yu, Qiuli;
Li, Jiameng;
Yu, Deshan;
Zhang, Yanjun;
Li, Chonghai;
Zhan, Zhifei;
Shi, Yonglin;
Xiong, Ying;
Wang, Xianjun;
Ji, Tianjiao;
Yang, Qian;
Zhu, Shuangli

Publication type:

Article

Emerging phylogenetic structure of the SARS-CoV-2 pandemic.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa082

By:

Fountain-Jones, Nicholas M;
Appaw, Raima Carol;
Carver, Scott;
Didelot, Xavier;
Volz, Erik;
Charleston, Michael

Publication type:

Article

Increasing prevalence and local transmission of non-B HIV-1 subtypes in the French Antilles and French Guiana between 1995 and 2018.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa081

By:

Bello, Gonzalo;
Delatorre, Edson;
Lacoste, Vincent;
Darcissac, Edith;
Herrmann-Storck, Cécile;
Tressières, Benoit;
Cabras, Ornella;
Lamaury, Isabelle;
Cabié, André;
Visseaux, Benoit;
Chaix, Marie-Laure;
Descamps, Diane;
Césaire, Raymond;
Nacher, Mathieu;
Santos, Georges Dos

Publication type:

Article

Full-genome sequencing of German rabbit haemorrhagic disease virus uncovers recombination between RHDV (GI.2) and EBHSV (GII.1).

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa080

By:

Szillat, Kevin P;
Höper, Dirk;
Beer, Martin;
König, Patricia

Publication type:

Article

Genetic diversity, phylogeography, and evolutionary dynamics of highly pathogenic avian influenza A (H5N6) viruses.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa079

By:

Zhang, Jiahao;
Chen, Yiqun;
Shan, Nan;
Wang, Xiaomin;
Lin, Shuxia;
Ma, Kaixiong;
Li, Bo;
Li, Huanan;
Liao, Ming;
Qi, Wenbao

Publication type:

Article

Extensive genetic diversity and host range of rodent-borne coronaviruses.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa078

By:

Wang, Wen;
Lin, Xian-Dan;
Zhang, Hai-Lin;
Wang, Miao-Ruo;
Guan, Xiao-Qing;
Holmes, Edward C;
Zhang, Yong-Zhen

Publication type:

Article

Genetic incompatibilities and reduced transmission in chickens may limit the evolution of reassortants between H9N2 and panzootic H5N8 clade 2.3.4.4 avian influenza virus showing high virulence for mammals.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa077

By:

Mostafa, Ahmed;
Blaurock, Claudia;
Scheibner, David;
Müller, Christin;
Blohm, Ulrike;
Schäfer, Alexander;
Gischke, Marcel;
Salaheldin, Ahmed H;
Nooh, Hanaa Z;
Ali, Mohamed A;
Breithaupt, Angele;
Mettenleiter, Thomas C;
Pleschka, Stephan;
Abdelwhab, Elsayed M

Publication type:

Article

The virome from a collection of endomycorrhizal fungi reveals new viral taxa with unprecedented genome organization.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa076

By:

Sutela, Suvi;
Forgia, Marco;
Vainio, Eeva J;
Chiapello, Marco;
Daghino, Stefania;
Vallino, Marta;
Martino, Elena;
Girlanda, Mariangela;
Perotto, Silvia;
Turina, Massimo

Publication type:

Article

PuMA: A papillomavirus genome annotation tool.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa068

By:

Pace, Josh;
Youens-Clark, Ken;
Freeman, Cordell;
Hurwitz, Bonnie;
Doorslaer, Koenraad Van

Publication type:

Article

Determinants of dengue virus dispersal in the Americas.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa074

By:

Allicock, Orchid M;
Sahadeo, Nikita;
Lemey, Philippe;
Auguste, Albert J;
Suchard, Marc A;
Rambaut, Andrew;
Carrington, Christine V F

Publication type:

Article

Multi-host dispersal of known and novel carnivore amdoparvoviruses.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa072

By:

Canuti, Marta;
McDonald, Emily;
Graham, Stephanie M;
Rodrigues, Bruce;
Bouchard, Émilie;
Neville, Richard;
Pitcher, Mac;
Whitney, Hugh G;
Marshall, H Dawn;
Lang, Andrew S

Publication type:

Article

Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa071

By:

Sharma, Vikas;
Lefeuvre, Pierre;
Roumagnac, Philippe;
Filloux, Denis;
Teycheney, Pierre-Yves;
Martin, Darren P;
Maumus, Florian

Publication type:

Article

Newly emerged resistance-breaking variants of cucumber mosaic virus represent ongoing host-interactive evolution of an RNA virus.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa070

By:

Heo, Kyeong-Jae;
Kwon, Sun-Jung;
Kim, Mi-Kyeong;
Kwak, Hae-Ryun;
Han, Soo-Jung;
Kwon, Min-Jun;
Rao, A L N;
Seo, Jang-Kyun

Publication type:

Article

Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa075

By:

Charre, Caroline;
Ginevra, Christophe;
Sabatier, Marina;
Regue, Hadrien;
Destras, Grégory;
Brun, Solenne;
Burfin, Gwendolyne;
Scholtes, Caroline;
Morfin, Florence;
Valette, Martine;
Lina, Bruno;
Bal, Antonin;
Josset, Laurence

Publication type:

Article

Preadaptation of pandemic GII.4 noroviruses in unsampled virus reservoirs years before emergence.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa067

By:

Ruis, Christopher;
Lindesmith, Lisa C;
Mallory, Michael L;
Brewer-Jensen, Paul D;
Bryant, Josephine M;
Costantini, Veronica;
Monit, Christopher;
Vinjé, Jan;
Baric, Ralph S;
Goldstein, Richard A;
Breuer, Judith

Publication type:

Article

Efficient inference, potential, and limitations of site-specific substitution models.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa066

By:

Puller, Vadim;
Sagulenko, Pavel;
Neher, Richard A

Publication type:

Article

Red fox viromes in urban and rural landscapes.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa065

By:

Campbell, Sarah J;
Ashley, Wilbur;
Gil-Fernandez, Margarita;
Newsome, Thomas M;
Giallonardo, Francesca Di;
Ortiz-Baez, Ayda Susana;
Mahar, Jackie E;
Towerton, Alison L;
Gillings, Michael;
Holmes, Edward C;
Carthey, Alexandra J R;
Geoghegan, Jemma L

Publication type:

Article

Novel hepaci- and pegi-like viruses in native Australian wildlife and non-human primates.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa064

By:

Porter, Ashleigh F;
Pettersson, John H -O;
Chang, Wei-Shan;
Harvey, Erin;
Rose, Karrie;
Shi, Mang;
Eden, John-Sebastian;
Buchmann, Jan;
Moritz, Craig;
Holmes, Edward C

Publication type:

Article

Temporal signal and the phylodynamic threshold of SARS-CoV-2.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa061

By:

Duchene, Sebastian;
Featherstone, Leo;
Haritopoulou-Sinanidou, Melina;
Rambaut, Andrew;
Lemey, Philippe;
Baele, Guy

Publication type:

Article

Broadscale phage therapy is unlikely to select for widespread evolution of bacterial resistance to virus infection.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa060

By:

Cohan, Frederick M;
Zandi, Matthew;
Turner, Paul E

Publication type:

Article

Evolution of a major virion protein of the giant pandoraviruses from an inactivated bacterial glycoside hydrolase.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa059

By:

Krupovic, Mart;
Yutin, Natalya;
Koonin, Eugene

Publication type:

Article

Analysis of the virome associated to grapevine downy mildew lesions reveals new mycovirus lineages.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa058

By:

Chiapello, M;
Rodríguez-Romero, J;
Ayllón, M A;
Turina, M

Publication type:

Article

Intra-genome variability in the dinucleotide composition of SARS-CoV-2.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa057

By:

Digard, Paul;
Lee, Hui Min;
Sharp, Colin;
Grey, Finn;
Gaunt, Eleanor

Publication type:

Article

The evolutionary history and global spatio-temporal dynamics of potato virus Y.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa056

By:

Gao, Fangluan;
Kawakubo, Shusuke;
Ho, Simon Y W;
Ohshima, Kazusato

Publication type:

Article

Genomes reveal genetic diversity of Piscine orthoreovirus in farmed and free-ranging salmonids from Canada and USA.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa054

By:

Siah, A;
Breyta, R B;
Warheit, K I;
Gagne, N;
Purcell, M K;
Morrison, D;
Powell, J F F;
Johnson, S C

Publication type:

Article

HTLV in South America: Origins of a silent ancient human infection.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa053

By:

Ishak, Ricardo;
Ishak, Marluísa de Oliveira Guimarães;
Azevedo, Vânia Nakauth;
Machado, Luiz Fernando Almeida;
Vallinoto, Izaura Maria Cayres;
Queiroz, Maria Alice Freitas;
Costa, Greice de Lemos Cardoso;
Guerreiro, João Farias;
Vallinoto, Antonio Carlos Rosário

Publication type:

Article

Towards a unified classification for human respiratory syncytial virus genotypes.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa052

By:

Ramaekers, Kaat;
Rector, Annabel;
Cuypers, Lize;
Lemey, Philippe;
Keyaerts, Els;
Ranst, Marc Van

Publication type:

Article

Diversity and circulation of Jingmen tick virus in ticks and mammals.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa051

By:

Guo, Jing-Jing;
Lin, Xian-Dan;
Chen, Yan-Mei;
Hao, Zong-Yu;
Wang, Zhao-Xiao;
Yu, Zhu-Mei;
Lu, Miao;
Li, Kun;
Qin, Xin-Cheng;
Wang, Wen;
Holmes, Edward C;
Hou, Wei;
Zhang, Yong-Zhen

Publication type:

Article

Genomic epidemiology and evolutionary dynamics of respiratory syncytial virus group B in Kilifi, Kenya, 2015–17.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa050

By:

Kamau, Everlyn;
Otieno, James R;
Murunga, Nickson;
Oketch, John W;
Ngoi, Joyce M;
Laurent, Zaydah R de;
Mwema, Anthony;
Nyiro, Joyce U;
Agoti, Charles N;
Nokes, D James

Publication type:

Article

Emergence and evolution of highly pathogenic porcine epidemic diarrhea virus by natural recombination of a low pathogenic vaccine isolate and a highly pathogenic strain in the spike gene.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa049

By:

Wang, Huinan;
Zhang, Libo;
Shang, Yuanbin;
Tan, Rongrong;
Ji, Mingxiang;
Yue, Xinliang;
Wang, Nannan;
Liu, Jun;
Wang, Chunhua;
Li, Yonggang;
Zhou, Tiezhong

Publication type:

Article

Genetic recombination in fast-spreading coxsackievirus A6 variants: a potential role in evolution and pathogenicity.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa048

By:

Song, Yang;
Zhang, Yong;
Han, Zhenzhi;
Xu, Wen;
Xiao, Jinbo;
Wang, Xianjun;
Wang, Jianxing;
Yang, Jianfang;
Yu, Qiuli;
Yu, Deshan;
Chen, Jianhua;
Huang, Wei;
Li, Jie;
Xie, Tong;
Lu, Huanhuan;
Ji, Tianjiao;
Yang, Qian;
Yan, Dongmei;
Zhu, Shuangli;
Xu, Wenbo

Publication type:

Article

Dual infection and recombination of Kaposi sarcoma herpesvirus revealed by whole-genome sequence analysis of effusion samples.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa047

By:

Castro, Elena M Cornejo;
Marshall, Vickie;
Lack, Justin;
Lurain, Kathryn;
Immonen, Taina;
Labo, Nazzarena;
Fisher, Nicholas C;
Ramaswami, Ramya;
Polizzotto, Mark N;
Keele, Brandon F;
Yarchoan, Robert;
Uldrick, Thomas S;
Whitby, Denise

Publication type:

Article

Genetic evolution and transmission dynamics of clade 2.3.2.1a highly pathogenic avian influenza A/H5N1 viruses in Bangladesh.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa046

By:

Kwon, Jung-Hoon;
Lee, Dong-Hun;
Criado, Miria Ferreira;
Killmaster, Lindsay;
Ali, Md Zulfekar;
Giasuddin, Mohammad;
Samad, Mohammed A;
Karim, Md. Rezaul;
Hasan, Mahmudul;
Brum, Eric;
Nasrin, Tanzinah;
Swayne, David E

Publication type:

Article

Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa045

By:

Nyasimi, Festus M;
Owuor, David Collins;
Ngoi, Joyce M;
Mwihuri, Alexander G;
Otieno, Grieven P;
Otieno, James R;
Githinji, George;
Nyiro, Joyce U;
Nokes, David James;
Agoti, Charles N

Publication type:

Article

Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa044

By:

Masembe, Charles;
Phan, My V T;
Robertson, David L;
Cotten, Matthew

Publication type:

Article

Evolution of dependoparvoviruses across geological timescales—implications for design of AAV-based gene therapy vectors.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa043

By:

Hildebrandt, Evin;
Penzes, Judit J;
Gifford, Robert J;
Agbandje-Mckenna, Mavis;
Kotin, Robert M

Publication type:

Article

When to be temperate: on the fitness benefits of lysis vs. lysogeny.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa042

By:

Li, Guanlin;
Cortez, Michael H;
Dushoff, Jonathan;
Weitz, Joshua S

Publication type:

Article

Adaptation of turnip mosaic potyvirus to a specific niche reduces its genetic and environmental robustness.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa041

By:

Butković, Anamarija;
González, Rubén;
Cobo, Inés;
Elena, Santiago F

Publication type:

Article

The role of genetic sequencing and analysis in the polio eradication programme.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa040

By:

Jorgensen, David;
Pons-Salort, Margarita;
Shaw, Alexander G;
Grassly, Nicholas C

Publication type:

Article

Three arenaviruses in three subspecific natal multimammate mouse taxa in Tanzania: same host specificity, but different spatial genetic structure?

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa039

By:

Cuypers, Laura N;
Baird, Stuart J E;
Hánová, Alexandra;
Locus, Tatjana;
Katakweba, Abdul S;
Gryseels, Sophie;
Bryja, Josef;
Leirs, Herwig;
Bellocq, Joëlle Goüy de

Publication type:

Article

Cross-order host switches of hepatitis C-related viruses illustrated by a novel hepacivirus from sloths.

Published in:

Virus Evolution, 2020, v. 6, n. 2, p. 1, doi. 10.1093/ve/veaa033

By:

Moreira-Soto, Andres;
Arroyo-Murillo, Francisco;
Sander, Anna-Lena;
Rasche, Andrea;
Corman, Victor;
Tegtmeyer, Birthe;
Steinmann, Eike;
Corrales-Aguilar, Eugenia;
Wieseke, Nicolas;
Avey-Arroyo, Judy;
Drexler, Jan Felix

Publication type:

Article