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Coronaviruses in wild animals sampled in and around Wuhan at the beginning of COVID-19 emergence.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac046
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- Article
Epidemiological inference from pathogen genomes: A review of phylodynamic models and applications.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac045
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- Article
Molecular epidemiology of HIV-1 in Oryol Oblast, Russia.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac044
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- Article
Correction to: Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1.
- Published in:
- 2022
- Publication type:
- Correction Notice
Competition for dominance within replicating quasispecies during prolonged SARS-CoV-2 infection in an immunocompromised host.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac042
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- Article
new perspective on the evolution and diversity of the genus Amdoparvovirus (family Parvoviridae) through genetic characterization, structural homology modeling, and phylogenetics.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac056
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- Article
Resolving deep evolutionary relationships within the RNA virus phylum Lenarviricota.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac055
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- Publication type:
- Article
Molecular epidemiology of Porcine Parvovirus Type 1 (PPV1) and the reactivity of vaccine-induced antisera against historical and current PPV1 strains.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac053
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- Publication type:
- Article
Evolutionary traits of Tick-borne encephalitis virus: Pervasive non-coding RNA structure conservation and molecular epidemiology.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac051
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- Publication type:
- Article
Identification of coronaviruses in farmed wild animals reveals their evolutionary origins in Guangdong, southern China.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac049
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- Publication type:
- Article
Identifying SARS-CoV-2 regional introductions and transmission clusters in real time.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac048
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- Publication type:
- Article
Accommodating sampling location uncertainty in continuous phylogeography.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac041
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- Publication type:
- Article
Comparative phylodynamics reveals the evolutionary history of SARS-CoV-2 emerging variants in the Arabian Peninsula.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac040
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- Article
Genetic diversity and connectivity of the Ostreid herpesvirus 1 populations in France: A first attempt to phylogeographic inference for a marine mollusc disease.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac039
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- Publication type:
- Article
Three new clades of putative viral RNA-dependent RNA polymerases with rare or unique catalytic triads discovered in libraries of ORFans from powdery mildews and the yeast of oenological interest Starmerella bacillaris.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac038
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- Publication type:
- Article
ANI analysis of poxvirus genomes reveals its potential application to viral species rank demarcation.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac031
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- Publication type:
- Article
Evolutionary analyses of emerging GII.2[P16] and GII.4 Sydney [P16] noroviruses.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac030
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- Publication type:
- Article
Timescales modulate optimal lysis–lysogeny decision switches and near-term phage reproduction.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac037
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- Publication type:
- Article
Replacement of the Gamma by the Delta variant in Brazil: Impact of lineage displacement on the ongoing pandemic.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac024
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- Publication type:
- Article
Defining virus-carrier networks that shape the composition of the mosquito core virome of a local ecosystem.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac036
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- Publication type:
- Article
Molecular epidemiological features of SARS-CoV-2 in Japan, 2020–1.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac034
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- Publication type:
- Article
Highly pathogenic avian influenza virus incursions of subtype H5N8, H5N5, H5N1, H5N4, and H5N3 in Germany during 2020-21.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac035
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- Publication type:
- Article
Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac033
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- Publication type:
- Article
Human land use impacts viral diversity and abundance in a New Zealand river.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac032
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- Publication type:
- Article
Reconstruction of the origin and dispersal of the worldwide dominant Hepatitis B Virus subgenotype D1.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac028
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- Publication type:
- Article
Widespread interspecific phylogenetic tree incongruence between mosquito-borne and insect-specific flaviviruses at hotspots originally identified in Zika virus.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac027
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- Publication type:
- Article
Large-scale analysis of SARS-CoV-2 synonymous mutations reveals the adaptation to the human codon usage during the virus evolution.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac026
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- Publication type:
- Article
early SARS-CoV-2 epidemic in Senegal was driven by the local emergence of B.1.416 and the introduction of B.1.1.420 from Europe.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac025
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- Publication type:
- Article
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac029
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- Publication type:
- Article
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac023
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- Publication type:
- Article
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac022
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- Publication type:
- Article
antibody-escape estimator for mutations to the SARS-CoV-2 receptor-binding domain.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac021
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- Publication type:
- Article
Whole-genome analysis to determine the rate and patterns of intra-subtype reassortment among influenza type-A viruses in Africa.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac005
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- Publication type:
- Article
Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac002
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- Publication type:
- Article
Evolutionary history and introduction of SARS-CoV-2 Alpha VOC/B.1.1.7 in Pakistan through international travelers.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac020
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- Article
Expanding the RNA virome of nematodes and other soil-inhabiting organisms.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac019
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- Publication type:
- Article
Evolution and diversity of inherited viruses in the Nearctic phantom midge, Chaoborus americanus.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac018
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- Publication type:
- Article
rise and spread of the SARS-CoV-2 AY.122 lineage in Russia.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac017
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- Publication type:
- Article
Quantifying rates of HIV-1 flow between risk groups and geographic locations in Kenya: A country-wide phylogenetic study.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac016
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- Publication type:
- Article
Phycova — a tool for exploring covariates of pathogen spread.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac015
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- Publication type:
- Article
emergence and transmission dynamics of HIV-1 CRF07_BC in Mainland China.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac014
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- Publication type:
- Article
Effects of host and pathogenicity on mutation rates in avian influenza A viruses.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac013
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- Publication type:
- Article
evolutionary dynamics and epidemiological history of hepatitis C virus genotype 6, including unique strains from the Li community of Hainan Island, China.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac012
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- Publication type:
- Article
Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac011
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- Publication type:
- Article
Emergence and spread of a sub-lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with further evolution of spike mutation accumulations shared with the Beta and Gamma variants.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac010
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- Publication type:
- Article
Transmission dynamics of low pathogenicity avian influenza (H2N2) viruses in live bird markets of the Northeast United States of America, 2013–2019.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac009
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- Publication type:
- Article
Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac008
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- Publication type:
- Article
Intra-host analysis of hepaciviral glycoprotein evolution reveals signatures associated with viral persistence and clearance.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac007
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- Publication type:
- Article
time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes.
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- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac006
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- Publication type:
- Article
Genetic and biological characteristics of species A rotaviruses detected in common shrews suggest a distinct evolutionary trajectory.
- Published in:
- Virus Evolution, 2022, v. 8, n. 1, p. 1, doi. 10.1093/ve/veac004
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- Publication type:
- Article