Works matching IS 20492618 AND DT 2024 AND VI 12 AND IP 1

Results: 238

Live Akkermansia muciniphila boosts dendritic cell retinoic acid synthesis to modulate IL-22 activity and mitigate colitis in mice.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01995-7

By:

Liu, Hongbin;
Huang, Ruo;
Shen, Binhai;
Huang, Chongyang;
zhou, Qian;
Xu, Jiahui;
Chen, Shengbo;
Lin, Xinlong;
Wang, Jun;
Zhao, Xinmei;
Guo, Yandong;
Ai, Xiuyun;
Liu, Yangyang;
Wang, Ye;
Zhang, Wendi;
Zhi, Fachao

Publication type:

Article

Metagenome-validated combined amplicon sequencing and text mining-based annotations for simultaneous profiling of bacteria and fungi: vaginal microbiota and mycobiota in healthy women.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01993-9

By:

Virtanen, Seppo;
Saqib, Schahzad;
Kanerva, Tinja;
Ventin-Holmberg, Rebecka;
Nieminen, Pekka;
Holster, Tiina;
Kalliala, Ilkka;
Salonen, Anne

Publication type:

Article

Distinct microbes, metabolites, and the host genome define the multi-omics profiles in right-sided and left-sided colon cancer.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01987-7

By:

Liang, Lei;
Kong, Cheng;
Li, Jinming;
Liu, Guang;
Wei, Jinwang;
Wang, Guan;
Wang, Qinying;
Yang, Yongzhi;
Shi, Debing;
Li, Xinxiang;
Ma, Yanlei

Publication type:

Article

Vaginal metatranscriptome meta-analysis reveals functional BV subgroups and novel colonisation strategies.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01992-w

By:

Dos Santos, Scott J.;
Copeland, Clara;
Macklaim, Jean M.;
Reid, Gregor;
Gloor, Gregory B.

Publication type:

Article

Screening and identification of antimicrobial peptides from the gut microbiome of cockroach Blattella germanica.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01985-9

By:

Chen, Sizhe;
Qi, Huitang;
Zhu, Xingzhuo;
Liu, Tianxiang;
Fan, Yuting;
Su, Qi;
Gong, Qiuyu;
Jia, Cangzhi;
Liu, Tian

Publication type:

Article

Asymmetric succession in soil microbial communities enhances the competitive advantage of invasive alien plants.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01989-5

By:

Zhao, Mengxin;
Yang, Yunfeng;
Zhang, Han;
Li, Qiao;
Zhao, Xiaoxun;
Guo, Xue;
Liu, Wanxue;
Wan, Fanghao

Publication type:

Article

Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD<sup>+</sup>.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01984-w

By:

Li, Cunyuan;
Liu, Kaiping;
Gu, Chengxiang;
Li, Ming;
Zhou, Ping;
Chen, Linxing;
Sun, Shize;
Li, Xiaoyue;
Wang, Limin;
Ni, Wei;
Li, Meng;
Hu, Shengwei

Publication type:

Article

Complementary insights into gut viral genomes: a comparative benchmark of short- and long-read metagenomes using diverse assemblers and binners.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01981-z

By:

Wang, Huarui;
Sun, Chuqing;
Li, Yun;
Chen, Jingchao;
Zhao, Xing-Ming;
Chen, Wei-Hua

Publication type:

Article

Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheese.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01980-0

By:

Santamarina-García, Gorka;
Yap, Min;
Crispie, Fiona;
Amores, Gustavo;
Lordan, Cathy;
Virto, Mailo;
Cotter, Paul D.

Publication type:

Article

Functional traits and adaptation of lake microbiomes on the Tibetan Plateau.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01979-7

By:

Feng, Xiaoyuan;
Xing, Peng;
Tao, Ye;
Wang, Xiaojun;
Wu, Qinglong L.;
Liu, Yongqin;
Luo, Haiwei

Publication type:

Article

pH-FISH: coupled microscale analysis of microbial identity and acid–base metabolism in complex biofilm samples.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01977-9

By:

Del Rey, Yumi Chokyu;
Kitzinger, Katharina;
Lund, Marie Braad;
Schramm, Andreas;
Meyer, Rikke Louise;
Wagner, Michael;
Schlafer, Sebastian

Publication type:

Article

Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01974-y

By:

He, Zhibin;
Hou, Yarong;
Li, Ying;
Bei, Qicheng;
Li, Xin;
Zhu, Yong-Guan;
Liesack, Werner;
Rillig, Matthias C.;
Peng, Jingjing

Publication type:

Article

Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01973-z

By:

Byrne, Audrey;
Diener, Christian;
Brown, Bryan P.;
Maust, Brandon S.;
Feng, Colin;
Alinde, Berenice L.;
Gibbons, Sean M.;
Koch, Meghan;
Gray, Clive M.;
Jaspan, Heather B.;
Nyangahu, Donald D.

Publication type:

Article

Metabolic modelling uncovers the complex interplay between fungal probiotics, poultry microbiomes, and diet.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01970-2

By:

Al-Nijir, Montazar;
Chuck, Christopher J.;
Bedford, Michael R.;
Henk, Daniel A.

Publication type:

Article

A salt-tolerant growth-promoting phyllosphere microbial combination from mangrove plants and its mechanism for promoting salt tolerance in rice.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01969-9

By:

Yang, Xiangxia;
Yuan, Rongwei;
Yang, Shuangyu;
Dai, Zhian;
Di, Na;
Yang, Haijun;
He, Zhili;
Wei, Mi

Publication type:

Article

A comprehensive RNA virome identified in the oyster Magallanagigas reveals the intricate network of virus sharing between seawater and mollusks.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01967-x

By:

Wu, Shuang;
Ni, Yimin;
Yan, Shuling;
Yu, Yongxin;
Wang, Yongjie

Publication type:

Article

New insights into the combined effects of aflatoxin B1 and Eimeria ovinoidalis on uterine function by disrupting the gut–blood–reproductive axis in sheep.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01966-y

By:

Huang, Shu-cheng;
Liu, Kai-li;
Chen, Pan;
Xu, Bo-wen;
Ding, Wen-li;
Yue, Tao-jing;
Lu, Ya-nan;
Li, Sen-yang;
Li, Jia-kui;
Jian, Fu-chun

Publication type:

Article

Microbiome testing in Europe: navigating analytical, ethical and regulatory challenges.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01991-x

By:

Rodriguez, Julie;
Cordaillat-Simmons, Magali;
Badalato, Nelly;
Berger, Bernard;
Breton, Heloise;
de Lahondès, Raynald;
Deschasaux-Tanguy, Mélanie;
Desvignes, Clara;
D'Humières, Camille;
Kampshoff, Stephan;
Lavelle, Aonghus;
Metwaly, Amira;
Quijada, Narciso M.;
Seegers, Jos F. M. L.;
Udocor, Austin;
Zwart, Hub;
Fasano, Alessio;
Carraturo, Federica;
Trebicka, Jonel;
Godoy, Yolanda

Publication type:

Article

Correction: The role of the oral microbiota in the causal effect of adjunctive antibiotics on clinical outcomes in stage III–IV periodontitis patients.

Published in:

2024

By:

Bardenhorst, Sven Kleine;
Hagenfeld, Daniel;
Matern, Johannes;
Prior, Karola;
Harks, Inga;
Eickholz, Peter;
Lorenz, Katrin;
Kim, Ti‑Sun;
Kocher, Thomas;
Meyle, Jörg;
Kaner, Doğan;
Jockel‑Schneider, Yvonne;
Harmsen, Dag;
Ehmke, Benjamin

Publication type:

Correction Notice

Analysis of early childhood intestinal microbial dynamics in a continuous-flow bioreactor.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01976-w

By:

Granato, Alessandra;
Renwick, Simone;
Yau, Christopher;
Kong, Tiffany;
Daigneault, Michelle C.;
Knip, Mikael;
Allen-Vercoe, Emma;
Danska, Jayne S.

Publication type:

Article

The host genotype actively shapes its microbiome across generations in laboratory mice.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01954-2

By:

Benga, Laurentiu;
Rehm, Anna;
Gougoula, Christina;
Westhoff, Philipp;
Wachtmeister, Thorsten;
Benten, W. Peter M.;
Engelhardt, Eva;
Weber, Andreas P. M.;
Köhrer, Karl;
Sager, Martin;
Janssen, Stefan

Publication type:

Article

Correction: Nepali oral microbiomes reflect a gradient of lifestyles from traditional to industrialized.

Published in:

2024

By:

Ryu, Erica P.;
Gautam, Yoshina;
Proctor, Diana M.;
Bhandari, Dinesh;
Tandukar, Sarmila;
Gupta, Meera;
Gautam, Guru Prasad;
Relman, David A.;
Shibl, Ahmed A.;
Sherchand, Jeevan Bahadur;
Jha, Aashish R.;
Davenport, Emily R.

Publication type:

Correction Notice

Dynamics of rice seed-borne bacteria from acquisition to seedling colonization.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01978-8

By:

Chen, Liying;
Bao, Han;
Yang, Jie;
Huo, Yan;
Zhang, Jiabin;
Fang, Rongxiang;
Zhang, Lili

Publication type:

Article

The role of pharmacomicrobiomics in HIV prevention, treatment, and women's health.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01953-3

By:

Swanson, Erik C.;
Basting, Christopher M.;
Klatt, Nichole R.

Publication type:

Article

Host-specific effects of Eubacterium species on Rg3-mediated modulation of osteosarcopenia in a genetically diverse mouse population.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01971-1

By:

Hong, Soyeon;
Nguyen, Bao Ngoc;
Min, Huitae;
Youn, Hye-Young;
Choi, Sowoon;
Hitayezu, Emmanuel;
Cha, Kwang-Hyun;
Park, Young Tae;
Lee, Choong-Gu;
Yoo, GyHye;
Kim, Myungsuk

Publication type:

Article

Tailored impact of dietary fibers on gut microbiota: a multi-omics comparison on the lean and obese microbial communities.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01975-x

By:

Dell'Olio, Andrea;
Scott Jr., William T.;
Taroncher-Ferrer, Silvia;
San Onofre, Nadia;
Soriano, José Miguel;
Rubert, Josep

Publication type:

Article

Lineage-dependent partitioning of activities in chemoclines defines Woesearchaeota ecotypes in an extreme aquatic ecosystem.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01956-0

By:

Cloarec, Lilian A.;
Bacchetta, Thomas;
Bruto, Maxime;
Leboulanger, Christophe;
Grossi, Vincent;
Brochier-Armanet, Céline;
Flandrois, Jean-Pierre;
Zurmely, Adrian;
Bernard, Cécile;
Troussellier, Marc;
Agogué, Hélène;
Ader, Magali;
Oger-Desfeux, Christine;
Oger, Philippe M.;
Vigneron, Adrien;
Hugoni, Mylène

Publication type:

Article

From grasslands to genes: exploring the major microbial drivers of antibiotic-resistance in microhabitats under persistent overgrazing.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01965-z

By:

Li, Jian;
Ma, Quanhui;
Jin, Mingkang;
Huang, Lijie;
Hui, Dafeng;
Sardans, Jordi;
Peñuelas, Josep;
O'Connor, Patrick;
Zhu, Yu;
Yang, Xiaoru;
Wang, Ling;
Zhu, Yong-Guan

Publication type:

Article

Correction: Parabacteroides distasonis regulates the infectivity and pathogenicity of SVCV at different water temperatures.

Published in:

2024

By:

Zhang, Yujun;
Gao, Yan;
Li, Chen;
Zhang, Yong‑An;
Lu, Yuanan;
Ye, Jing;
Liu, Xueqin

Publication type:

Correction Notice

The intestinal microbiome and Cetobacterium somerae inhibit viral infection through TLR2-type I IFN signaling axis in zebrafish.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01958-y

By:

Liang, Hui;
Li, Ming;
Chen, Jie;
Zhou, Wenhao;
Xia, Dongmei;
Ding, Qianwen;
Yang, Yalin;
Zhang, Zhen;
Ran, Chao;
Zhou, Zhigang

Publication type:

Article

Multi-omics investigation into long-distance road transportation effects on respiratory health and immunometabolic responses in calves.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01962-2

By:

Qi, Jiancheng;
Huang, Fangyuan;
Gan, Linli;
Zhou, Xueke;
Gou, Liping;
Xie, Yue;
Guo, Hongrui;
Fang, Jing;
Zuo, Zhicai

Publication type:

Article

Integrated multi-approaches reveal unique metabolic mechanisms of Vestimentifera to adapt to deep sea.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01960-4

By:

Sun, Qinglei;
Yuan, Zihao;
Sun, Yuanyuan;
Sun, Li

Publication type:

Article

The fall armyworm converts maize endophytes into its own probiotics to detoxify benzoxazinoids and promote caterpillar growth.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01957-z

By:

Qi, Jinfeng;
Xiao, Fangjie;
Liu, Xingxing;
Li, Jing;
Wang, Haocai;
Li, Shu;
Yu, Hongwei;
Xu, Yuxing;
Wang, Hang

Publication type:

Article

Wild again: recovery of a beneficial Cannabis seed endophyte from low domestication genotypes.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01951-5

By:

Lobato, Carolina;
de Freitas, João Machado;
Habich, Daniel;
Kögl, Isabella;
Berg, Gabriele;
Cernava, Tomislav

Publication type:

Article

F. prausnitzii potentially modulates the association between citrus intake and depression.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01961-3

By:

Samuthpongtorn, Chatpol;
Chan, Allison A.;
Ma, Wenjie;
Wang, Fenglei;
Nguyen, Long H.;
Wang, Dong D.;
Okereke, Olivia I.;
Huttenhower, Curtis;
Chan, Andrew T.;
Mehta, Raaj S.

Publication type:

Article

Synthetic communities derived from the core endophytic microbiome of hyperaccumulators and their role in cadmium phytoremediation.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01959-x

By:

Huang, Lukuan;
Fan, Ziyan;
Hu, Zhipeng;
Li, Zhesi;
Fu, Yingyi;
Wang, Qiong;
Lin, Xianyong;
Feng, Ying

Publication type:

Article

Unveiling bat-borne viruses: a comprehensive classification and analysis of virome evolution.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01955-1

By:

Wang, Yuyang;
Xu, Panpan;
Han, Yelin;
Zhao, Wenliang;
Zhao, Lamei;
Li, Rui;
Zhang, Junpeng;
Zhang, Shuyi;
Lu, Jian;
Daszak, Peter;
Jin, Qi;
Wu, Zhiqiang

Publication type:

Article

Various microbial taxa couple arsenic transformation to nitrogen and carbon cycling in paddy soils.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01952-4

By:

Zhao, Xin-Di;
Gao, Zi-Yu;
Peng, Jingjing;
Konstantinidis, Konstantinos T.;
Zhang, Si-Yu

Publication type:

Article

Effect of plant-derived microbial soil legacy in a grafting system—a turn for the better.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01938-2

By:

Wang, Tingting;
Ruan, Yang;
Xu, Qicheng;
Shen, Qirong;
Ling, Ning;
Vandenkoornhuyse, Philippe

Publication type:

Article

An integrated microbiome- and metabolome-genome-wide association study reveals the role of heritable ruminal microbial carbohydrate metabolism in lactation performance in Holstein dairy cows.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01937-3

By:

Zhang, Chenguang;
Liu, Huifeng;
Jiang, Xingwei;
Zhang, Zhihong;
Hou, Xinfeng;
Wang, Yue;
Wang, Dangdang;
Li, Zongjun;
Cao, Yangchun;
Wu, Shengru;
Huws, Sharon A.;
Yao, Junhu

Publication type:

Article

Moving beyond species: fungal function in house dust provides novel targets for potential indicators of mold growth in homes.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01915-9

By:

Balasubrahmaniam, Neeraja;
King, Jon C.;
Hegarty, Bridget;
Dannemiller, Karen C.

Publication type:

Article

Multimodal analysis identifies microbiome changes linked to stem cell transplantation-associated diseases.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01948-0

By:

Artacho, Alejandro;
González-Torres, Cintya;
Gómez-Cebrián, Nuria;
Moles-Poveda, Paula;
Pons, Javier;
Jiménez, Nuria;
Casanova, María Jinglei;
Montoro, Juan;
Balaguer, Aitana;
Villalba, Marta;
Chorão, Pedro;
Puchades-Carrasco, Leonor;
Sanz, Jaime;
Ubeda, Carles

Publication type:

Article

Medium-chain fatty acid triglycerides improve feed intake and oxidative stress of finishing bulls by regulating ghrelin concentration and gastrointestinal tract microorganisms and rumen metabolites.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01946-2

By:

Luan, Jiaming;
Feng, Xin;
Du, Yunlong;
Yang, Dongxu;
Geng, Chunyin

Publication type:

Article

MAGqual: a stand-alone pipeline to assess the quality of metagenome-assembled genomes.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01949-z

By:

Cansdale, Annabel;
Chong, James P. J.

Publication type:

Article

Intestinal commensal bacteria promote Bactrocera dorsalis larval development through the vitamin B6 synthesis pathway.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01931-9

By:

Gu, Jian;
Yao, Zhichao;
Lemaitre, Bruno;
Cai, Zhaohui;
Zhang, Hongyu;
Li, Xiaoxue

Publication type:

Article

The gut microbiome in patients with Cushing's disease affects depression- and anxiety-like behavior in mice.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01939-1

By:

Nie, Ding;
Wang, Dawei;
Wang, Zhenhua;
Fang, Qiuyue;
Wang, Hongyun;
Xie, Weiyan;
Li, Chuzhong;
Zhang, Yazhuo

Publication type:

Article

Eubacterium siraeum suppresses fat deposition via decreasing the tyrosine-mediated PI3K/AKT signaling pathway in high-fat diet-induced obesity.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01944-4

By:

Lai, Xueshuang;
Liu, Shuang;
Miao, Jian;
Shen, Ran;
Wang, Zhen;
Zhang, Zhe;
Gong, Huanfa;
Li, Meng;
Pan, Yuchun;
Wang, Qishan

Publication type:

Article

Quality traits drive the enrichment of Massilia in the rhizosphere to improve soybean oil content.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01933-7

By:

Han, Qin;
Zhu, Guanghui;
Qiu, Hongmei;
Li, Mingbo;
Zhang, Jiaming;
Wu, Xinying;
Xiao, Renhao;
Zhang, Yan;
Yang, Wei;
Tian, Bing;
Xu, Lanxi;
Zhou, Jiayang;
Li, Yutong;
Wang, Yueqiang;
Bai, Yang;
Li, Xia

Publication type:

Article

The coral Oculina patagonica holobiont and its response to confinement, temperature, and Vibrio infections.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01921-x

By:

Martin-Cuadrado, Ana-Belen;
Rubio-Portillo, Esther;
Rosselló, Francesc;
Antón, Josefa

Publication type:

Article

Protorhabditis nematodes and pathogen-antagonistic bacteria interactively promote plant health.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01947-1

By:

Xu, Xu;
Jiang, Renqiang;
Wang, Xinling;
Liu, Shanshan;
Dong, Menghui;
Mao, Hancheng;
Li, Xingrui;
Ni, Ziyu;
Lv, Nana;
Deng, Xuhui;
Xiong, Wu;
Tao, Chengyuan;
Li, Rong;
Shen, Qirong;
Geisen, Stefan

Publication type:

Article