Works matching IS 2047217X AND DT 2024 AND VI 13 AND IP 1
Results: 118
Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing.
- Published in:
- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae109
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- Article
scGraph2Vec: a deep generative model for gene embedding augmented by graph neural network and single-cell omics data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae108
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- Article
ssMutPA: single-sample mutation-based pathway analysis approach for cancer precision medicine.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae105
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- Article
PlasGO: enhancing GO-based function prediction for plasmid-encoded proteins based on genetic structure.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae104
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- Article
cfDNA UniFlow: a unified preprocessing pipeline for cell-free DNA data from liquid biopsies.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae102
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- Article
A dataset profiling the multiomic landscape of the prefrontal cortex in amyotrophic lateral sclerosis.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae100
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- Article
Near telomere-to-telomere genome assembly of Mongolian cattle: implications for population genetic variation and beef quality.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae099
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Hiding in plain sight: a research parasite's perspective on new lessons in old data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae097
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- Article
The telomere-to-telomere (T2T) genome provides insights into the evolution of specialized centromere sequences in sandalwood.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae096
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Stratum corneum nanotexture feature detection using deep learning and spatial analysis: a noninvasive tool for skin barrier assessment.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae095
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- Article
DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae094
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- Article
Learning a generalized graph transformer for protein function prediction in dissimilar sequences.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae093
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Functional annotation of regulatory elements in rainbow trout uncovers roles of the epigenome in genetic selection and genome evolution.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae092
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- Article
The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae091
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- Article
demuxSNP: supervised demultiplexing single-cell RNA sequencing using cell hashing and SNPs.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae090
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- Article
stMMR: accurate and robust spatial domain identification from spatially resolved transcriptomics with multimodal feature representation.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae089
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- Article
GPU-accelerated Kendall distance computation for large or sparse data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae088
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"UDE DIATOMS in the Wild 2024": a new image dataset of freshwater diatoms for training deep learning models.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae087
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- Article
AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae086
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CoCoPyE: feature engineering for learning and prediction of genome quality indices.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae079
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Construction and analysis of telomere-to-telomere genomes for 2 sweet oranges: Longhuihong and Newhall (Citrus sinensis).
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae084
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CAT Bridge: an efficient toolkit for gene–metabolite association mining from multiomics data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae083
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Genomic exploration of the endangered oriental stork, Ciconia boyciana, sheds light on migration adaptation and future conservation.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae081
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- Article
Protein–protein and protein–nucleic acid binding site prediction via interpretable hierarchical geometric deep learning.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae080
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- Article
De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae085
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StereoSiTE: a framework to spatially and quantitatively profile the cellular neighborhood organized iTME.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae078
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Correction to: A graph clustering algorithm for detection and genotyping of structural variants from long reads.
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- 2024
- Publication type:
- Correction Notice
vEMstitch: an algorithm for fully automatic image stitching of volume electron microscopy.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae076
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- Article
High-quality assembly of the T2T genome for Isodon rubescens f. lushanensis reveals genomic structure variations between 2 typical forms of Isodon rubescens.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae075
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PhageGE: an interactive web platform for exploratory analysis and visualization of bacteriophage genomes.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae074
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- Article
Discovering genotype–phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD).
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae073
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Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae072
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae071
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Genomic insights into endangerment and conservation of the garlic-fruit tree (Malania oleifera), a plant species with extremely small populations.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae070
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Correction to: mechanisms of hepatic steatosis in chickens: integrated analysis of the host genome, molecular phenomics and gut microbiome.
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- 2024
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- Correction Notice
Harnessing population diversity: in search of tools of the trade.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae068
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Telomere-to-telomere gap-free genome assembly of the endangered Yangtze finless porpoise and East Asian finless porpoise.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae067
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Celebrating 30 years of access to NASA Space Life Sciences data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae066
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V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae065
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Whole-genome sequencing of the invasive golden apple snail Pomacea canaliculata from Asia reveals rapid expansion and adaptive evolution.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae064
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The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae063
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Deepdefense: annotation of immune systems in prokaryotes using deep learning.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae062
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DNA methylation analysis to differentiate reference, breed, and parent-of-origin effects in the bovine pangenome era.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae061
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Design and implementation of a scalable high-performance computing (HPC) cluster for omics data analysis: achievements, challenges and recommendations in LMICs.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae060
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RNAVirHost: a machine learning–based method for predicting hosts of RNA viruses through viral genomes.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae059
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An interconnected data infrastructure to support large-scale rare disease research.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae058
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Deep learning links localized digital pathology phenotypes with transcriptional subtype and patient outcome in glioblastoma.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae057
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TooManyCellsInteractive: A visualization tool for dynamic exploration of single-cell data.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae056
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Efficient phylogenetic tree inference for massive taxonomic datasets: harnessing the power of a server to analyze 1 million taxa.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae055
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Web of venom: exploration of big data resources in animal toxin research.
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- GigaScience, 2024, v. 13, n. 1, p. 1, doi. 10.1093/gigascience/giae054
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