Works matching IS 2047217X AND DT 2020 AND VI 9 AND IP 12

Results: 19

Parliament2: Accurate structural variant calling at scale.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa145

By:

Zarate, Samantha;
Carroll, Andrew;
Mahmoud, Medhat;
Krasheninina, Olga;
Jun, Goo;
Salerno, William J;
Schatz, Michael C;
Boerwinkle, Eric;
Gibbs, Richard A;
Sedlazeck, Fritz J

Publication type:

Article

Making experimental data tables in the life sciences more FAIR: a pragmatic approach.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa144

By:

Jacob, Daniel;
David, Romain;
Aubin, Sophie;
Gibon, Yves

Publication type:

Article

High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa143

By:

Gao, Qionghua;
Xiong, Zijun;
Larsen, Rasmus Stenbak;
Zhou, Long;
Zhao, Jie;
Ding, Guo;
Zhao, Ruoping;
Liu, Chengyuan;
Ran, Hao;
Zhang, Guojie

Publication type:

Article

iGenomics: Comprehensive DNA sequence analysis on your Smartphone.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa138

By:

Palatnick, Aspyn;
Zhou, Bin;
Ghedin, Elodie;
Schatz, Michael C

Publication type:

Article

SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa151

By:

Young, Matthew D;
Behjati, Sam

Publication type:

Article

Corrigendum to: PEMA: a flexible pipeline for environmental DNA metabarcoding analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa150

By:

Zafeiropoulos, Haris;
Viet, Ha Quoc;
Vasileiadou, Katerina;
Potirakis, Antonis;
Arvanitidis, Christos;
Topalis, Pantelis;
Pavloudi, Christina;
Pafilis, Evangelos

Publication type:

Article

GALLO: An R package for genomic annotation and integration of multiple data sources in livestock for positional candidate loci.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa149

By:

Fonseca, Pablo A S;
Suárez-Vega, Aroa;
Marras, Gabriele;
Cánovas, Ángela

Publication type:

Article

Toward a scalable framework for reproducible processing of volumetric, nanoscale neuroimaging datasets.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa147

By:

Johnson, Erik C;
Wilt, Miller;
Rodriguez, Luis M;
Norman-Tenazas, Raphael;
Rivera, Corban;
Drenkow, Nathan;
Kleissas, Dean;
LaGrow, Theodore J;
Cowley, Hannah P;
Downs, Joseph;
K. Matelsky, Jordan;
J. Hughes, Marisa;
P. Reilly, Elizabeth;
A. Wester, Brock;
L. Dyer, Eva;
P. Kording, Konrad;
R. Gray-Roncal, William

Publication type:

Article

Comparison of long-read methods for sequencing and assembly of a plant genome.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa146

By:

Murigneux, Valentine;
Rai, Subash Kumar;
Furtado, Agnelo;
Bruxner, Timothy J C;
Tian, Wei;
Harliwong, Ivon;
Wei, Hanmin;
Yang, Bicheng;
Ye, Qianyu;
Anderson, Ellis;
Mao, Qing;
Drmanac, Radoje;
Wang, Ou;
Peters, Brock A;
Xu, Mengyang;
Wu, Pei;
Topp, Bruce;
Coin, Lachlan J M;
Henry, Robert J

Publication type:

Article

Genome sequencing of deep-sea hydrothermal vent snails reveals adaptions to extreme environments.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa139

By:

Zeng, Xiang;
Zhang, Yaolei;
Meng, Lingfeng;
Fan, Guangyi;
Bai, Jie;
Chen, Jianwei;
Song, Yue;
Seim, Inge;
Wang, Congyan;
Shao, Zenghua;
Liu, Nanxi;
Lu, Haorong;
Fu, Xiaoteng;
Wang, Liping;
Liu, Xin;
Liu, Shanshan;
Shao, Zongze

Publication type:

Article

DrivAER: Identification of driving transcriptional programs in single-cell RNA sequencing data.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa122

By:

Simon, Lukas M;
Yan, Fangfang;
Zhao, Zhongming

Publication type:

Article

File-based localization of numerical perturbations in data analysis pipelines.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa106

By:

Salari, Ali;
Kiar, Gregory;
Lewis, Lindsay;
Evans, Alan C;
Glatard, Tristan

Publication type:

Article

Chromosome-level draft genome of a diploid plum (Prunus salicina).

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa130

By:

Liu, Chaoyang;
Feng, Chao;
Peng, Weizhuo;
Hao, Jingjing;
Wang, Juntao;
Pan, Jianjun;
He, Yehua

Publication type:

Article

Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa123

By:

Lang, Dandan;
Zhang, Shilai;
Ren, Pingping;
Liang, Fan;
Sun, Zongyi;
Meng, Guanliang;
Tan, Yuntao;
Li, Xiaokang;
Lai, Qihua;
Han, Lingling;
Wang, Depeng;
Hu, Fengyi;
Wang, Wen;
Liu, Shanlin

Publication type:

Article

Long-read assembly of the Brassica napus reference genome Darmor-bzh.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa137

By:

Rousseau-Gueutin, Mathieu;
Belser, Caroline;
Da Silva, Corinne;
Richard, Gautier;
Istace, Benjamin;
Cruaud, Corinne;
Falentin, Cyril;
Boideau, Franz;
Boutte, Julien;
Delourme, Regine;
Deniot, Gwenaëlle;
Engelen, Stefan;
de Carvalho, Julie Ferreira;
Lemainque, Arnaud;
Maillet, Loeiz;
Morice, Jérôme;
Wincker, Patrick;
Denoeud, France;
Chèvre, Anne-Marie;
Aury, Jean-Marc

Publication type:

Article

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa136

By:

Sanders, Lauren M;
Cheney, Allison;
Seninge, Lucas;
van den Bout, Anouk;
Chen, Marissa;
Beale, Holly C;
Kephart, Ellen Towle;
Pfeil, Jacob;
Learned, Katrina;
Lyle, A Geoffrey;
Bjork, Isabel;
Haussler, David;
Salama, Sofie R;
Vaske, Olena M

Publication type:

Article

Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa135

By:

Weißbecker, Christina;
Schnabel, Beatrix;
Heintz-Buschart, Anna

Publication type:

Article

Accurate assembly of the olive baboon (Papio anubis) genome using long-read and Hi-C data.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa134

By:

Batra, Sanjit Singh;
Levy-Sakin, Michal;
Robinson, Jacqueline;
Guillory, Joseph;
Durinck, Steffen;
Vilgalys, Tauras P;
Kwok, Pui-Yan;
Cox, Laura A;
Seshagiri, Somasekar;
Song, Yun S;
Wall, Jeffrey D

Publication type:

Article

Fractional ridge regression: a fast, interpretable reparameterization of ridge regression.

Published in:

GigaScience, 2020, v. 9, n. 12, p. 1, doi. 10.1093/gigascience/giaa133

By:

Rokem, Ariel;
Kay, Kendrick

Publication type:

Article